Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 4.5e-242 840.9 434 100.0
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 5.1e-238 827.4 434 98.6
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 1.5e-237 825.9 434 98.4
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 3.3e-237 824.7 434 98.2
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 4.3e-237 824.3 434 98.2
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 5.6e-237 823.9 434 98.2
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 1.6e-236 822.4 434 97.9
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 2.8e-236 821.6 434 97.9
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 2.7e-223 778.5 434 91.7
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 8.8e-222 773.5 434 91.7
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 1.7e-220 769.2 434 91.5
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 7.7e-218 760.4 434 90.1
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 1.0e-217 760.0 434 89.9
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 8.5e-217 756.9 430 90.0
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 1.4e-216 756.1 434 89.9
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 1.9e-216 755.7 434 90.1
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 1.9e-216 755.7 434 89.6
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 4.2e-216 754.6 434 88.9
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 4.2e-216 754.6 434 90.6
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 5.5e-216 754.2 434 89.9
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 1.6e-215 752.7 434 89.4
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 2.1e-215 752.3 434 88.0
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 2.7e-215 751.9 433 89.1
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 4.7e-215 751.1 434 89.2
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 6.1e-215 750.7 434 89.2
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 7.9e-215 750.4 434 88.9
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 1.4e-214 749.6 434 88.7
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 1.4e-214 749.6 434 88.5
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 1.8e-214 749.2 434 88.5
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 1.8e-214 749.2 434 88.5
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 3.0e-214 748.4 434 88.7
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 6.7e-214 747.3 434 89.4
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 8.8e-214 746.9 434 88.5
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 8.8e-214 746.9 434 88.0
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 7.4e-213 743.8 434 88.5
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 7.4e-213 743.8 434 88.0
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 9.7e-213 743.4 434 88.9
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 1.3e-212 743.0 434 87.8
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 6.3e-212 740.7 434 87.6
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 1.1e-211 740.0 434 87.3
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 3.1e-211 738.4 434 86.6
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 3.1e-211 738.4 434 86.6
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 5.3e-211 737.6 434 86.9
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 3.5e-210 734.9 434 86.6
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 7.7e-210 733.8 434 86.6
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 1.0e-209 733.4 434 86.2
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 8.5e-209 730.3 434 85.9
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 8.5e-209 730.3 434 85.7
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 9.4e-208 726.9 434 84.6
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 2.1e-207 725.7 435 84.6
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 2.1e-207 725.7 434 85.5
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 4.7e-207 724.5 435 84.4
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 4.7e-207 724.5 435 84.1
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 6.1e-207 724.2 434 85.5
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 1.0e-206 723.4 435 84.1
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 1.4e-206 723.0 435 84.1
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 1.4e-206 723.0 435 84.1
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 2.3e-206 722.2 435 84.4
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 3.0e-206 721.8 434 84.8
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 3.9e-206 721.5 434 84.6
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 5.2e-206 721.1 434 85.0
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 6.7e-206 720.7 434 87.1
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 1.5e-205 719.5 434 84.8
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 4.4e-205 718.0 434 85.3
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 7.4e-205 717.2 435 83.4
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 2.8e-204 715.3 434 84.6
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 8.2e-204 713.8 434 83.2
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 4.1e-203 711.4 434 83.6
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 9.1e-203 710.3 435 82.8
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 1.2e-202 709.9 435 83.0
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 1.6e-202 709.5 434 84.3
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 3.5e-202 708.4 435 81.6
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 5.9e-202 707.6 434 83.4
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 7.7e-202 707.2 435 83.0
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 1.3e-201 706.4 434 82.7
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 1.7e-201 706.1 434 82.3
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 1.7e-201 706.1 434 82.0
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 3.8e-201 704.9 434 82.0
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 1.2e-199 699.9 434 82.3
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 1.6e-199 699.5 434 82.9
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 1.6e-199 699.5 459 79.7
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 1.6e-199 699.5 459 79.7
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 2.1e-199 699.1 434 82.7
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 2.7e-199 698.7 434 82.7
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 4.7e-199 698.0 434 82.9
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 1.0e-198 696.8 434 81.1
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 2.3e-198 695.7 404 87.4
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 2.3e-198 695.7 434 82.0
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 3.0e-198 695.3 434 82.3
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 4.0e-198 694.9 434 81.1
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 1.2e-197 693.3 434 82.0
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 1.2e-197 693.3 434 82.0
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 4.4e-197 691.4 434 80.9
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 1.4e-195 686.4 434 79.7
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 4.1e-195 684.9 410 84.1
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 5.3e-195 684.5 433 79.7
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 9.1e-195 683.7 434 79.3
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 2.0e-194 682.6 434 79.3
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 2.7e-194 682.2 412 84.0
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 1.5e-192 676.4 434 79.0
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 3.2e-192 675.2 434 80.4
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 3.6e-191 671.8 386 89.1
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 1.0e-190 670.2 434 77.4
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 2.6e-189 665.6 413 82.1
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 4.8e-188 661.4 434 77.0
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 3.1e-187 658.7 417 79.9
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 1.3e-185 653.3 459 74.9
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 2.3e-185 652.5 434 74.2
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 7.2e-184 647.5 434 75.8
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 6.1e-183 644.4 434 73.3
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 8.3e-180 634.0 416 77.2
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 3.5e-178 628.6 434 75.8
MD07G1159700 Malus domestica HOM05D002391 ORTHO05D004870 6.8e-174 614.4 330 95.5
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 1.7e-172 609.8 434 74.0
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 1.2e-170 603.6 379 81.5
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 1.2e-167 593.6 403 75.4
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 9.8e-165 583.9 412 74.5
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 9.2e-163 577.4 434 71.0
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 5.2e-158 561.6 441 63.7
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 4.4e-157 558.5 433 63.5
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 4.0e-150 535.4 441 62.6
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 1.9e-144 516.5 465 58.5
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 7.3e-144 514.6 444 67.3
vmacro23330 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 1.5e-133 480.3 328 76.8
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 2.7e-114 416.4 348 62.9
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 1.3e-113 414.1 266 80.8
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 1.0e-108 397.9 225 92.4
Cpa.g.sc193.14 Carica papaya HOM05D002391 ORTHO05D004870 2.3e-105 386.7 210 92.9
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 6.7e-105 385.2 444 51.4
CDE02G1610 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 1.7e-95 354.0 211 82.0
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 5.5e-91 339.0 233 76.0
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 2.6e-88 330.1 228 75.4
CAN.G732.6 Capsicum annuum HOM05D002391 ORTHO05D004870 2.8e-87 326.6 190 86.8
PGSC0003DMG402031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 2.8e-87 326.6 184 88.6
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 1.8e-86 323.9 419 49.2
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 1.3e-84 317.8 231 71.0
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 2.9e-84 316.6 452 39.8
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 7.0e-78 295.4 198 77.3
BraA03t14107Z Brassica rapa HOM05D002391 ORTHO05D004870 7.0e-78 295.4 198 77.3
A08p28600 Brassica napus HOM05D002391 ORTHO05D004870 5.9e-77 292.4 198 76.8
BraA02t04916Z Brassica rapa HOM05D002391 ORTHO05D004870 5.9e-77 292.4 198 76.8
BraA02t08770Z Brassica rapa HOM05D002391 ORTHO05D004870 5.9e-77 292.4 198 76.8
A05p28430 Brassica napus HOM05D002391 ORTHO05D004870 2.9e-76 290.0 194 78.4
BraA05t21723Z Brassica rapa HOM05D002391 ORTHO05D004870 2.9e-76 290.0 194 78.4
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 8.3e-71 271.9 197 71.6
A07p33310 Brassica napus HOM05D002391 ORTHO05D004870 1.6e-69 267.7 178 78.7
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 8.0e-66 255.4 225 57.8
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 1.3e-63 248.1 477 34.0
Actinidia33035 Actinidia chinensis HOM05D002391 ORTHO05D004870 2.3e-49 200.7 120 86.7
Dinv08357 Davidia involucrata HOM05D002391 ORTHO05D004870 1.5e-48 198.0 187 57.8
HanXRQChr05g0132281 Helianthus annuus HOM05D002391 ORTHO05D004870 1.5e-48 198.0 123 79.7
BcaC01g02750 Brassica carinata HOM05D002391 ORTHO05D004870 6.8e-33 146.0 143 61.5
ECA246G0062 Erigeron canadensis HOM05D002391 ORTHO05D004870 2.4e-30 137.5 96 71.9
MBI12_g48128_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 1.7e-28 131.3 78 87.2
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 4.3e-27 126.7 99 65.7
C03p60940 Brassica napus HOM05D002391 ORTHO05D004870 2.1e-21 107.8 81 72.8
BolC3t18356H Brassica oleracea HOM05D002391 ORTHO05D004870 2.1e-21 107.8 81 72.8
TPR.G25208 Trifolium pratense HOM05D002391 ORTHO05D004870 5.1e-20 103.2 75 69.3
QL11p025959 Quercus lobata HOM05D002391 ORTHO05D004870 8.7e-20 102.4 181 43.6
TPR.G22870 Trifolium pratense HOM05D002391 ORTHO05D011575 1.1e-17 95.5 105 50.5
TPR.G19723 Trifolium pratense HOM05D002391 ORTHO05D004870 4.6e-13 80.1 59 67.8
TPR.G9012 Trifolium pratense HOM05D002391 ORTHO05D004870 6.0e-13 79.7 57 68.4


User provided reference genes

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