Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 1.9e-82 309.3 174 100.0
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 4.4e-47 191.8 317 40.1
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.7e-46 189.9 243 46.5
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 6.3e-46 188.0 245 44.9
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 9.1e-45 184.1 320 39.1
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 1.2e-44 183.7 321 38.9
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 1.1e-42 177.2 239 43.9
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.1e-42 177.2 279 40.9
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 4.2e-42 175.3 215 47.9
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 9.4e-42 174.1 305 38.4
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 3.6e-41 172.2 223 49.8
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 3.6e-41 172.2 320 36.9
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 6.1e-41 171.4 273 39.6
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 3.0e-40 169.1 314 36.3
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 3.0e-40 169.1 325 36.0
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 6.7e-40 167.9 319 38.9
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 8.8e-40 167.5 300 37.7
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.2e-39 167.2 289 38.1
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.3e-39 165.6 317 39.1
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 7.5e-39 164.5 313 35.5
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 2.2e-38 162.9 327 35.8
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 4.8e-38 161.8 295 35.3
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.8e-38 161.8 313 35.8
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.8e-38 161.8 313 35.8
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 6.3e-38 161.4 313 35.8
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 8.2e-38 161.0 308 38.0
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.4e-37 160.2 327 35.5
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.4e-37 160.2 306 35.9
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 7.0e-37 157.9 313 35.1
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.2e-36 157.1 298 34.9
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 1.2e-36 157.1 298 34.9
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.6e-36 156.8 311 35.7
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 5.9e-36 154.8 290 37.2
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 7.7e-36 154.5 313 36.7
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 3.8e-35 152.1 313 34.2
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 6.5e-35 151.4 320 34.7
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 1.1e-34 150.6 252 38.9
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.9e-34 149.8 344 34.0
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 5.5e-34 148.3 272 34.9
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 7.2e-34 147.9 259 36.3
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 9.4e-34 147.5 282 35.1
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.2e-33 147.1 298 34.6
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.6e-33 146.7 283 35.3
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 4.7e-33 145.2 264 36.0
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 4.0e-32 142.1 294 32.7
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 5.2e-32 141.7 329 31.9
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-31 140.6 75 89.3
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.5e-31 140.2 262 37.0
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 7.5e-31 137.9 75 84.0
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 9.8e-31 137.5 284 34.9
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 2.2e-30 136.3 264 40.9
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.4e-29 133.7 251 39.4
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 1.8e-29 133.3 261 36.4
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 3.1e-29 132.5 280 41.4
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 3.1e-29 132.5 280 41.4
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 9.1e-29 131.0 277 39.7
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 1.2e-28 130.6 282 33.7
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 2.0e-28 129.8 265 34.3
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.8e-27 125.6 315 34.9
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.5e-26 123.6 71 81.7
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 5.5e-26 121.7 277 37.5
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.6e-25 120.2 287 33.8
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 2.1e-25 119.8 326 31.0
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 8.0e-25 117.9 287 33.1
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 1.4e-24 117.1 329 29.2
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 6.8e-24 114.8 310 30.6
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.2e-23 114.0 351 28.2
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 9.8e-23 110.9 305 28.2
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.8e-21 106.7 328 27.7
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 5.4e-21 105.1 330 27.6
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 9.2e-21 104.4 49 95.9
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 1.3e-19 100.5 308 27.9
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 5.6e-18 95.1 46 91.3
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.6e-17 92.4 49 79.6
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 6.1e-17 91.7 49 79.6
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 6.0e-12 75.1 62 59.7
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 6.0e-12 75.1 57 59.6
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 6.0e-12 75.1 55 65.5
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 7.8e-12 74.7 57 63.2
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 3.0e-11 72.8 177 32.2
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 6.6e-11 71.6 55 61.8
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.5e-10 70.5 54 61.1
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 4.3e-10 68.9 53 64.2
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 5.6e-10 68.6 48 66.7
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.6e-09 67.0 55 60.0
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 3.6e-09 65.9 58 56.9
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 4.7e-09 65.5 54 59.3
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.7e-09 65.5 51 60.8
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 6.2e-09 65.1 53 60.4
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 8.0e-09 64.7 53 58.5
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 8.0e-09 64.7 58 53.4
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 8.0e-09 64.7 55 58.2
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 8.0e-09 64.7 53 60.4
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 1.1e-08 64.3 57 57.9
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.1e-08 64.3 52 61.5
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.4e-08 63.9 47 66.0
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.4e-08 63.9 55 58.2
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.4e-08 63.9 48 62.5
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.8e-08 63.5 56 55.4
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.8e-08 63.5 57 56.1
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.8e-08 63.5 58 55.2
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.8e-08 63.5 53 58.5
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.8e-08 63.5 53 58.5
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.8e-08 63.5 61 52.5
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 2.3e-08 63.2 64 51.6
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 3.1e-08 62.8 53 58.5
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 3.1e-08 62.8 56 55.4
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 3.1e-08 62.8 53 58.5
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 3.1e-08 62.8 52 59.6
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 3.1e-08 62.8 55 56.4
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 3.1e-08 62.8 54 55.6
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 3.1e-08 62.8 54 55.6
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 3.1e-08 62.8 54 55.6
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 4.0e-08 62.4 53 56.6
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.0e-08 62.4 59 54.2
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 4.0e-08 62.4 53 58.5
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 5.2e-08 62.0 52 57.7
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 5.2e-08 62.0 58 53.4
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 5.2e-08 62.0 55 54.5
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 5.2e-08 62.0 56 55.4
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 5.2e-08 62.0 60 53.3
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 6.8e-08 61.6 52 55.8
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 6.8e-08 61.6 51 58.8
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 6.8e-08 61.6 52 57.7
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 6.8e-08 61.6 52 57.7
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 8.9e-08 61.2 51 58.8
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 8.9e-08 61.2 60 53.3
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 8.9e-08 61.2 61 52.5
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 8.9e-08 61.2 61 52.5
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 8.9e-08 61.2 53 56.6
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.2e-07 60.8 55 52.7
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.2e-07 60.8 58 53.4
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.2e-07 60.8 58 53.4
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.2e-07 60.8 58 53.4
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.2e-07 60.8 58 53.4
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 1.2e-07 60.8 58 53.4
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 1.5e-07 60.5 56 55.4
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.5e-07 60.5 60 50.0
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 1.5e-07 60.5 59 52.5
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.5e-07 60.5 54 57.4
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.5e-07 60.5 61 49.2
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 1.5e-07 60.5 61 49.2
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.5e-07 60.5 63 50.8
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 2.0e-07 60.1 75 44.0
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 2.0e-07 60.1 70 44.3
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 2.6e-07 59.7 59 52.5
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 2.6e-07 59.7 60 50.0
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.6e-07 59.7 60 50.0
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 2.6e-07 59.7 59 54.2
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.6e-07 59.7 62 50.0
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 2.6e-07 59.7 64 48.4
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 4.4e-07 58.9 55 54.5
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 5.8e-07 58.5 61 49.2
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 5.8e-07 58.5 61 49.2
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 5.8e-07 58.5 62 48.4
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.3e-06 57.4 60 48.3
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.7e-06 55.8 75 40.0
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 6.4e-06 55.1 56 50.0


User provided reference genes

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