Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-83 312.8 155 100.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 3.4e-75 285.0 148 94.6
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 4.9e-74 281.2 148 93.9
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.1e-73 280.0 148 93.2
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.9e-73 279.3 147 93.2
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.4e-73 277.7 147 93.2
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 7.0e-73 277.3 147 93.2
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.6e-72 276.2 147 92.5
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 2.0e-72 275.8 148 90.5
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 3.5e-72 275.0 148 88.5
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 4.6e-72 274.6 147 91.2
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.9e-70 269.2 148 87.8
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.3e-70 268.1 147 90.5
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 8.0e-69 263.8 148 87.2
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 3.1e-68 261.9 147 85.7
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.2e-67 260.0 147 85.0
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 2.6e-67 258.8 152 82.2
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 4.4e-67 258.1 152 82.2
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 5.8e-67 257.7 152 82.9
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 5.8e-67 257.7 148 82.4
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 5.8e-67 257.7 152 80.3
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 9.8e-67 256.9 147 83.0
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.3e-66 256.5 152 81.6
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.7e-66 256.1 148 83.8
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 2.2e-66 255.8 152 81.6
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 2.2e-66 255.8 152 81.6
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.9e-66 255.4 149 83.2
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 3.7e-66 255.0 152 80.9
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 8.3e-66 253.8 152 81.6
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 8.3e-66 253.8 147 81.0
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.1e-65 253.4 152 80.3
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 1.4e-65 253.1 149 83.9
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 2.4e-65 252.3 154 77.3
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 7.0e-65 250.8 148 81.1
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.0e-65 250.8 144 86.8
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 7.0e-65 250.8 152 79.6
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 9.2e-65 250.4 147 81.6
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.2e-64 250.0 148 81.8
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 1.2e-64 250.0 152 78.9
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 1.2e-64 250.0 148 79.7
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.2e-64 250.0 148 81.8
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 2.1e-64 249.2 148 82.4
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.1e-64 249.2 152 78.9
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 4.6e-64 248.1 152 80.9
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 6.0e-64 247.7 152 79.6
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 6.0e-64 247.7 149 81.2
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 7.8e-64 247.3 147 81.0
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.3e-63 246.5 148 77.0
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.3e-63 246.5 154 77.3
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 2.3e-63 245.7 148 79.1
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 2.3e-63 245.7 148 80.4
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 2.3e-63 245.7 154 76.0
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 3.0e-63 245.4 147 78.9
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 3.9e-63 245.0 154 76.0
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 3.9e-63 245.0 154 76.0
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 5.1e-63 244.6 152 78.3
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 6.6e-63 244.2 154 76.0
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 8.6e-63 243.8 147 82.3
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 1.5e-62 243.0 148 75.7
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 1.5e-62 243.0 152 78.3
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 2.5e-62 242.3 148 81.1
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 2.5e-62 242.3 147 79.6
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 2.5e-62 242.3 148 76.4
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 3.3e-62 241.9 147 77.6
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 4.3e-62 241.5 148 75.7
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 5.6e-62 241.1 147 79.6
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 7.3e-62 240.7 147 78.9
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 7.3e-62 240.7 147 78.9
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 7.3e-62 240.7 147 80.3
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 9.5e-62 240.4 147 78.9
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 9.5e-62 240.4 147 78.2
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.2e-61 240.0 147 81.6
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.2e-61 240.0 152 76.3
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.2e-61 240.0 152 76.3
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.6e-61 239.6 148 75.7
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 1.6e-61 239.6 152 75.7
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.6e-61 239.6 152 75.7
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 2.8e-61 238.8 148 76.4
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 2.8e-61 238.8 147 76.2
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 3.6e-61 238.4 147 76.9
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 3.6e-61 238.4 147 78.2
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 8.1e-61 237.3 152 73.7
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.1e-61 237.3 148 81.8
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 8.1e-61 237.3 148 75.0
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 8.1e-61 237.3 147 75.5
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 8.1e-61 237.3 147 80.3
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 8.1e-61 237.3 147 80.3
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 1.4e-60 236.5 152 75.0
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.4e-60 236.5 152 75.0
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.4e-60 236.5 148 74.3
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.4e-60 236.5 147 78.2
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.8e-60 236.1 147 77.6
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 2.3e-60 235.7 152 73.7
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 2.3e-60 235.7 147 78.2
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 4.0e-60 235.0 152 74.3
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 8.9e-60 233.8 152 73.7
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 8.9e-60 233.8 153 74.5
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.2e-59 233.4 148 77.0
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 2.0e-59 232.6 152 73.0
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 2.0e-59 232.6 152 73.0
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 2.0e-59 232.6 147 75.5
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 2.0e-59 232.6 183 66.7
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 2.6e-59 232.3 152 72.4
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.6e-59 232.3 124 92.7
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 2.6e-59 232.3 151 80.8
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 5.8e-59 231.1 152 73.0
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 5.8e-59 231.1 152 73.0
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 5.8e-59 231.1 152 73.0
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 5.8e-59 231.1 147 74.8
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.5e-59 230.7 147 76.2
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 9.9e-59 230.3 147 75.5
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 9.9e-59 230.3 152 72.4
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.3e-58 229.9 147 76.2
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.7e-58 229.6 147 73.5
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 2.2e-58 229.2 152 73.0
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 2.9e-58 228.8 152 72.4
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 3.7e-58 228.4 152 73.0
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.4e-58 227.6 147 74.8
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 8.3e-58 227.3 133 82.0
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 2.1e-56 222.6 148 72.3
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.3e-55 219.9 155 70.3
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 6.6e-55 217.6 147 72.1
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 4.3e-54 214.9 147 70.7
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 9.5e-54 213.8 152 67.8
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 2.8e-53 212.2 147 66.7
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 6.8e-52 207.6 147 70.7
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 1.5e-51 206.5 154 67.5
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.5e-51 206.5 229 49.8
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-51 206.5 128 81.2
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 2.9e-50 202.2 128 74.2
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 2.4e-49 199.1 144 70.1
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.3e-45 186.8 139 66.9
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 2.8e-45 185.7 120 75.0
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 4.8e-45 184.9 147 59.9
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 6.9e-44 181.0 111 79.3
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 6.9e-44 181.0 134 67.9
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 9.9e-43 177.2 129 70.5
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 2.2e-42 176.0 152 55.9
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 3.8e-42 175.3 126 70.6
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 1.4e-41 173.3 147 60.5
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 1.9e-41 172.9 149 57.0
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 4.6e-40 168.3 153 54.2
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.9e-39 165.2 99 78.8
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 3.4e-35 152.1 116 63.8
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.0e-31 140.6 85 80.0
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 1.8e-31 139.8 109 65.1
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 3.0e-31 139.0 97 71.1
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.3e-29 133.7 102 67.6
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 4.8e-29 131.7 79 83.5
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.4e-28 129.4 85 78.8
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-27 127.1 127 55.1
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 1.0e-26 124.0 81 75.3
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 2.9e-26 122.5 147 42.9
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 2.9e-26 122.5 86 68.6
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 3.8e-26 122.1 67 82.1
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 2.5e-25 119.4 85 70.6
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 5.5e-25 118.2 95 64.2
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 7.1e-25 117.9 85 67.1
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 4.6e-24 115.2 96 62.5
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 3.3e-22 109.0 76 73.7
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.1e-21 106.3 117 47.0
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.1e-21 106.3 85 63.5
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 1.4e-20 103.6 67 76.1
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 1.8e-20 103.2 62 72.6
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 3.1e-20 102.4 66 69.7
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 2.0e-19 99.8 62 77.4
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 3.0e-15 85.9 49 83.7
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 6.7e-15 84.7 58 69.0
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 4.1e-12 75.5 54 64.8
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 8.5e-10 67.8 157 33.1
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 9.4e-09 64.3 139 29.5
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 1.0e-07 60.8 49 59.2
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 2.3e-07 59.7 54 53.7
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 5.1e-07 58.5 54 53.7
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 8.8e-07 57.8 67 46.3
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 3.3e-06 55.8 27 85.2


User provided reference genes

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