Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0334141 Rosa chinensis HOM05D000003 ORTHO05D046617 2.0e-51 205.3 89 100.0
FvH4_6g16683 Fragaria vesca HOM05D000003 ORTHO05D000004 1.7e-31 139.0 87 70.1
FvH4_6g40361 Fragaria vesca HOM05D000003 ORTHO05D000006 1.1e-30 136.3 87 69.0
FvH4_3g29411 Fragaria vesca HOM05D000003 ORTHO05D000006 6.1e-29 130.6 87 66.7
FvH4_4g18821 Fragaria vesca HOM05D000003 ORTHO05D000006 1.2e-27 126.3 87 62.1
FvH4_5g30171 Fragaria vesca HOM05D000003 ORTHO05D000006 1.2e-16 89.7 65 63.1
FvH4_6g28111 Fragaria vesca HOM05D000003 ORTHO05D000006 1.2e-16 89.7 70 55.7
FAN17G1726 Fragaria x ananassa HOM05D000003 ORTHO05D046617 1.6e-13 79.3 55 63.6
FvH4_2g05110 Fragaria vesca HOM05D000003 ORTHO05D022586 2.3e-12 75.5 87 44.8
QL10p010330 Quercus lobata HOM05D000003 ORTHO05D000126 1.5e-11 72.8 77 44.2
FvH4_2g01463 Fragaria vesca HOM05D000003 ORTHO05D000006 4.4e-11 71.2 88 38.6
Dinv31372 Davidia involucrata HOM05D000003 ORTHO05D000126 2.8e-10 68.6 76 42.1
Dinv44808 Davidia involucrata HOM05D000003 ORTHO05D000126 2.8e-10 68.6 76 42.1
Dinv24168 Davidia involucrata HOM05D000723 ORTHO05D001760 4.9e-10 67.8 76 42.1
FvH4_4g16371 Fragaria vesca HOM05D000003 ORTHO05D000006 1.8e-09 65.9 52 61.5
FvH4_6g16753 Fragaria vesca HOM05D000003 ORTHO05D000006 3.1e-09 65.1 39 69.2
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 9.2e-09 63.5 84 35.7
FvH4_3g37001 Fragaria vesca HOM05D000003 ORTHO05D000006 9.2e-09 63.5 86 34.9
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 1.2e-08 63.2 73 41.1
EL10Ac1g01973 Beta vulgaris HOM05D000575 ORTHO05D000006 1.6e-08 62.8 74 43.2
EL10Ac2g04834 Beta vulgaris HOM05D000003 ORTHO05D000006 1.6e-08 62.8 76 39.5
Ah.10g031070 Amaranthus hybridus HOM05D000003 ORTHO05D000006 2.0e-08 62.4 75 38.7
RcHm_v2.0_Chr1g0340391 Rosa chinensis HOM05D000003 ORTHO05D000004 2.0e-08 62.4 79 43.0
EL10Ac7g16739 Beta vulgaris HOM05D000052 ORTHO05D000006 3.5e-08 61.6 83 39.8
Dinv11321 Davidia involucrata HOM05D000003 ORTHO05D000006 3.5e-08 61.6 76 38.2
Atru.chr9.494 Acer truncatum HOM05D000003 ORTHO05D000006 4.5e-08 61.2 89 40.4
EL10Ac6g14142 Beta vulgaris HOM05D000003 ORTHO05D000006 4.5e-08 61.2 74 44.6
Dinv36946 Davidia involucrata HOM05D000003 ORTHO05D000006 5.9e-08 60.8 76 38.2
Dinv38129 Davidia involucrata HOM05D000003 ORTHO05D000006 5.9e-08 60.8 76 38.2
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 5.9e-08 60.8 83 32.5
RcHm_v2.0_Chr2g0136131 Rosa chinensis HOM05D000003 ORTHO05D000006 5.9e-08 60.8 86 34.9
Dinv13289 Davidia involucrata HOM05D000003 ORTHO05D000006 7.8e-08 60.5 77 37.7
PSO782G4947 Papaver somniferum HOM05D000003 ORTHO05D000006 7.8e-08 60.5 70 41.4
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-07 60.1 74 36.5
FvH4_2g04721 Fragaria vesca HOM05D000003 ORTHO05D000006 1.0e-07 60.1 86 33.7
PSO210G3912 Papaver somniferum HOM05D000003 ORTHO05D000006 1.0e-07 60.1 70 40.0
FvH4_1g17621 Fragaria vesca HOM05D000003 ORTHO05D000006 1.3e-07 59.7 86 36.0
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 1.3e-07 59.7 70 40.0
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-07 59.3 80 33.8
AUR62006131 Chenopodium quinoa HOM05D000003 ORTHO05D000126 2.3e-07 58.9 76 39.5
FvH4_2g11954 Fragaria vesca HOM05D000003 ORTHO05D000006 2.3e-07 58.9 80 36.2
FvH4_2g12002 Fragaria vesca HOM05D000003 ORTHO05D000006 2.3e-07 58.9 80 36.2
Rhsim04G0061100 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.3e-07 58.9 76 40.8
COL.COLO4_19177 Corchorus olitorius HOM05D000003 ORTHO05D000006 2.9e-07 58.5 91 37.4
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 2.9e-07 58.5 80 38.8
EL10As2g23263 Beta vulgaris HOM05D000003 ORTHO05D000006 3.9e-07 58.2 70 40.0
FvH4_2g12222 Fragaria vesca HOM05D000003 ORTHO05D000006 3.9e-07 58.2 80 35.0
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 5.0e-07 57.8 72 40.3
Atru.chr4.30 Acer truncatum HOM05D000003 ORTHO05D000004 5.0e-07 57.8 77 37.7
FvH4_4g24131 Fragaria vesca HOM05D000003 ORTHO05D015112 5.0e-07 57.8 68 36.8
Sabra06G0000400 Salix brachista HOM05D000003 ORTHO05D000004 5.0e-07 57.8 80 38.8
Atru.chr5.3511 Acer truncatum HOM05D000003 ORTHO05D000006 6.6e-07 57.4 80 36.2
AUR62033272 Chenopodium quinoa HOM05D000849 ORTHO05D003989 6.6e-07 57.4 78 41.0
MBI05_g38419_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 6.6e-07 57.4 91 35.2
FvH4_4g08193 Fragaria vesca HOM05D000003 ORTHO05D000006 8.6e-07 57.0 61 42.6
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 8.6e-07 57.0 80 35.0
Atru.chr6.1035 Acer truncatum HOM05D000024 ORTHO05D000006 1.1e-06 56.6 77 37.7
AUR62019956 Chenopodium quinoa HOM05D000003 ORTHO05D000126 1.1e-06 56.6 75 40.0
AUR62041827 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.1e-06 56.6 70 44.3
Dinv43698 Davidia involucrata HOM05D000003 ORTHO05D000006 1.1e-06 56.6 73 41.1
Atru.chr1.3365 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-06 56.2 85 37.6
AUR62027925 Chenopodium quinoa HOM05D000156 ORTHO05D002600 1.5e-06 56.2 70 44.3
FvH4_5g28072 Fragaria vesca HOM05D000003 ORTHO05D000006 1.5e-06 56.2 80 33.8
PSO063G2385 Papaver somniferum HOM05D000003 ORTHO05D000006 1.5e-06 56.2 73 38.4
SGA_v2.0_scaffold255G45341 Striga asiatica HOM05D000003 ORTHO05D000006 1.5e-06 56.2 85 37.6
AUR62024890 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.9e-06 55.8 70 40.0
FvH4_5g34261 Fragaria vesca HOM05D000003 ORTHO05D000006 1.9e-06 55.8 80 33.8
FvH4_6g19793 Fragaria vesca HOM05D000003 ORTHO05D000006 1.9e-06 55.8 86 36.0
Hma1.2p1_0989F.1_g244760 Hydrangea macrophylla HOM05D000003 ORTHO05D000006 1.9e-06 55.8 71 40.8
RcHm_v2.0_Chr1g0342601 Rosa chinensis HOM05D000003 ORTHO05D000006 2.5e-06 55.5 80 35.0
TWI80G0001 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 2.5e-06 55.5 85 35.3
Atru.chr2.1761 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-06 55.1 72 37.5
Ah.12g063590 Amaranthus hybridus HOM05D000003 ORTHO05D026536 3.3e-06 55.1 66 40.9
CANSAT11G1881 Cannabis sativa HOM05D000003 ORTHO05D000006 3.3e-06 55.1 85 35.3
COL.COLO4_26026 Corchorus olitorius HOM05D000003 ORTHO05D000126 3.3e-06 55.1 76 31.6
COL.COLO4_38120 Corchorus olitorius HOM05D000003 ORTHO05D000006 3.3e-06 55.1 91 35.2
Dinv31302 Davidia involucrata HOM05D000003 ORTHO05D000006 3.3e-06 55.1 91 29.7
FvH4_5g06181 Fragaria vesca HOM05D000003 ORTHO05D000004 3.3e-06 55.1 86 31.4
FvH4_5g28591 Fragaria vesca HOM05D000003 ORTHO05D000006 3.3e-06 55.1 80 37.5
MBI01_g24431_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 3.3e-06 55.1 76 40.8
FvH4_6g27602 Fragaria vesca HOM05D000003 ORTHO05D000006 4.3e-06 54.7 80 32.5
MBI12_g20031_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 4.3e-06 54.7 87 37.9
RcHm_v2.0_Chr2g0146151 Rosa chinensis HOM05D000003 ORTHO05D000006 4.3e-06 54.7 81 34.6
TPR.G11081 Trifolium pratense HOM05D000024 ORTHO05D000006 4.3e-06 54.7 91 31.9
EL10Ac5g11644 Beta vulgaris HOM05D000003 ORTHO05D000006 5.6e-06 54.3 70 40.0
AUR62031650 Chenopodium quinoa HOM05D000003 ORTHO05D000006 5.6e-06 54.3 76 38.2
QL03p072137 Quercus lobata HOM05D000003 ORTHO05D000006 5.6e-06 54.3 86 39.5
QL09p011339 Quercus lobata HOM05D000003 ORTHO05D000006 5.6e-06 54.3 85 35.3
RcHm_v2.0_Chr4g0398301 Rosa chinensis HOM05D000003 ORTHO05D000006 5.6e-06 54.3 86 33.7
SHI32251 Sapria himalayana HOM05D000024 ORTHO05D000006 5.6e-06 54.3 87 29.9
TAR682G0005 Trochodendron aralioides HOM05D000003 ORTHO05D000006 5.6e-06 54.3 91 33.0
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 7.3e-06 53.9 75 34.7
MSTRG.26849 Avicennia marina HOM05D000024 ORTHO05D000006 7.3e-06 53.9 84 32.1
CANSAT78G0953 Cannabis sativa HOM05D000003 ORTHO05D000006 7.3e-06 53.9 85 35.3
PSO675G1004 Papaver somniferum HOM05D000003 ORTHO05D000006 7.3e-06 53.9 72 36.1
Atru.chr8.1059 Acer truncatum HOM05D000024 ORTHO05D000006 9.5e-06 53.5 80 37.5
TAR493G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000006 9.5e-06 53.5 87 36.8


User provided reference genes

Program Settings