Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0333991 Rosa chinensis HOM05D004809 ORTHO05D006732 6.2e-79 297.4 146 100.0
RcHm_v2.0_Chr1g0333101 Rosa chinensis HOM05D004809 ORTHO05D006732 2.4e-75 285.4 143 97.9
FAN04G1536 Fragaria x ananassa HOM05D004809 ORTHO05D006732 2.7e-66 255.4 143 88.8
FAN08G1717 Fragaria x ananassa HOM05D004809 ORTHO05D006732 3.5e-66 255.0 143 88.8
FvH4_5g38020 Fragaria vesca HOM05D004809 ORTHO05D006732 2.3e-65 252.3 143 87.4
FAN18G3489 Fragaria x ananassa HOM05D004809 ORTHO05D006732 2.3e-65 252.3 143 87.4
Prupe.2G084800 Prunus persica HOM05D004809 ORTHO05D006732 1.4e-54 216.5 142 76.1
MD02G1248400 Malus domestica HOM05D004809 ORTHO05D006732 1.8e-54 216.1 141 75.2
MD07G1067800 Malus domestica HOM05D004809 ORTHO05D006732 9.0e-54 213.8 143 73.4
Dinv20809 Davidia involucrata HOM05D004809 ORTHO05D006732 2.2e-44 182.6 146 63.0
CiPaw.13G037200 Carya illinoinensis HOM05D004809 ORTHO05D006732 5.5e-43 177.9 140 64.3
Manes.07G089701 Manihot esculenta HOM05D004809 ORTHO05D006732 5.5e-43 177.9 141 63.8
Duzib106G1880 Durio zibethinus HOM05D004809 ORTHO05D006732 3.5e-42 175.3 147 60.5
Haze_02592 Corylus avellana HOM05D004809 ORTHO05D006732 7.9e-42 174.1 142 61.3
GSVIVG01034738001 Vitis vinifera HOM05D004809 ORTHO05D006732 3.0e-41 172.2 150 62.0
CANSAT56G2003 Cannabis sativa HOM05D004809 ORTHO05D006732 6.7e-41 171.0 143 62.9
Thecc.10G104900 Theobroma cacao HOM05D004809 ORTHO05D006732 8.7e-41 170.6 145 57.9
QL04p042558 Quercus lobata HOM05D004809 ORTHO05D006732 4.3e-40 168.3 144 61.1
QL04p042573 Quercus lobata HOM05D004809 ORTHO05D006732 1.3e-39 166.8 144 60.4
Sabra08G0016600 Salix brachista HOM05D004809 ORTHO05D006732 8.2e-39 164.1 142 58.5
Gorai.008G098400 Gossypium raimondii HOM05D004809 ORTHO05D006732 3.1e-38 162.2 145 57.2
CSS0050047 Camellia sinensis var. sinensis HOM05D004809 ORTHO05D006732 6.9e-38 161.0 144 59.0
Atru.chr12.976 Acer truncatum HOM05D004809 ORTHO05D006732 1.2e-37 160.2 143 57.3
Hma1.2p1_0352F.1_g133000 Hydrangea macrophylla HOM05D004809 ORTHO05D006732 2.6e-37 159.1 145 60.0
Hma1.2p1_0352F.1_g133010 Hydrangea macrophylla HOM05D004809 ORTHO05D006732 2.6e-37 159.1 145 60.0
Sed0005221 Sechium edule HOM05D004809 ORTHO05D006732 2.6e-37 159.1 139 56.8
Gohir.D12G091000 Gossypium hirsutum HOM05D004809 ORTHO05D006732 3.4e-37 158.7 145 55.9
Potri.008G024700 Populus trichocarpa HOM05D004809 ORTHO05D006732 3.4e-37 158.7 141 57.4
TAR636G3234 Trochodendron aralioides HOM05D004809 ORTHO05D006732 5.9e-37 157.9 145 53.8
Rhsim03G0105000 Rhododendron simsii HOM05D004809 ORTHO05D006732 3.8e-36 155.2 144 58.3
Eucgr.G02708 Eucalyptus grandis HOM05D004809 ORTHO05D006732 1.1e-35 153.7 144 55.6
Lj2A29T80 Lonicera japonica HOM05D004809 ORTHO05D006732 4.2e-35 151.8 148 53.4
Nitab4.5_0000962g0070 Nicotiana tabacum HOM05D004809 ORTHO05D006732 4.2e-35 151.8 143 57.3
Lalb_Chr02g0151411 Lupinus albus HOM05D004809 ORTHO05D006732 1.2e-34 150.2 141 53.9
Solyc11g007320.2 Solanum lycopersicum HOM05D004809 ORTHO05D006732 1.6e-34 149.8 143 55.9
Sopen11g003210 Solanum pennellii HOM05D004809 ORTHO05D006732 1.6e-34 149.8 143 55.9
Nn6g35016 Nelumbo nucifera HOM05D004809 ORTHO05D006732 2.1e-34 149.4 146 53.4
FAN08G1494 Fragaria x ananassa HOM05D004809 ORTHO05D006732 2.7e-34 149.1 104 76.9
Nitab4.5_0005390g0010 Nicotiana tabacum HOM05D004809 ORTHO05D006732 4.6e-34 148.3 143 55.2
Cpa.g.sc19.17 Carica papaya HOM05D004809 ORTHO05D006732 6.1e-34 147.9 141 55.3
Oeu015034.1 Olea europaea HOM05D004809 ORTHO05D006732 7.9e-34 147.5 143 55.2
Actinidia18582 Actinidia chinensis HOM05D004809 ORTHO05D006732 1.0e-33 147.1 144 56.2
TPR.G2503 Trifolium pratense HOM05D004809 ORTHO05D006732 1.8e-33 146.4 141 53.2
arahy.Tifrunner.gnm1.ann1.RW77QZ Arachis hypogaea HOM05D004809 ORTHO05D006732 8.8e-33 144.1 141 52.5
Ca_10498_v3 Cicer arietinum L. HOM05D004809 ORTHO05D006732 5.7e-32 141.4 141 51.1
Glyma.20G187700 Glycine max HOM05D004809 ORTHO05D006732 5.7e-32 141.4 141 53.2
Lj5g0024267 Lotus japonicus HOM05D004809 ORTHO05D006732 5.7e-32 141.4 143 50.3
Peaxi162Scf00244g01123 Petunia axillaris HOM05D004809 ORTHO05D006732 5.7e-32 141.4 142 52.8
arahy.Tifrunner.gnm1.ann1.9JEX28 Arachis hypogaea HOM05D004809 ORTHO05D006732 9.7e-32 140.6 143 51.0
Medtr1g492850 Medicago truncatula HOM05D004809 ORTHO05D006732 1.3e-31 140.2 141 52.5
ClCG05G021650 Citrullus lanatus HOM05D004809 ORTHO05D006732 3.7e-31 138.7 140 49.3
Cc02_g09980 Coffea canephora HOM05D004809 ORTHO05D006732 1.8e-30 136.3 143 51.7
Sc06g0002220 Simmondsia chinensis HOM05D004809 ORTHO05D006732 4.1e-30 135.2 145 50.3
VMungo0720G0319 Vigna mungo HOM05D004809 ORTHO05D006732 5.3e-30 134.8 143 51.7
Migut.F00896 Erythranthe guttata HOM05D004809 ORTHO05D006732 6.9e-30 134.4 143 51.0
Lsat_1_v5_gn_0_7340 Lactuca sativa HOM05D004809 ORTHO05D006732 6.9e-30 134.4 141 50.4
ECA232G3125 Erigeron canadensis HOM05D004809 ORTHO05D006732 2.0e-29 132.9 141 51.1
Phvul.007G104300 Phaseolus vulgaris HOM05D004809 ORTHO05D006732 2.0e-29 132.9 143 49.0
SalBow6G1224 Salvia bowleyana HOM05D004809 ORTHO05D006732 4.5e-29 131.7 144 49.3
CAN.G534.16 Capsicum annuum HOM05D004809 ORTHO05D006732 5.9e-29 131.3 142 51.4
DCAR_028402 Daucus carota HOM05D004809 ORTHO05D006732 7.7e-29 131.0 143 49.0
PGR142G2585 Punica granatum HOM05D004809 ORTHO05D006732 1.3e-28 130.2 146 50.7
Os03g0835800 Oryza sativa ssp. japonica HOM05D004809 ORTHO05D006732 1.7e-28 129.8 143 51.7
RcHm_v2.0_Chr1g0333031 Rosa chinensis HOM05D004809 ORTHO05D006732 2.9e-28 129.0 75 85.3
MBI17_g00711_MAGBIO Magnolia biondii HOM05D004809 ORTHO05D006732 1.4e-27 126.7 144 49.3
CsaV3_5G035620 Cucumis sativus L. HOM05D004809 ORTHO05D006732 5.5e-27 124.8 129 48.8
SGA_v2.0_scaffold62G21351 Striga asiatica HOM05D004809 ORTHO05D006732 2.3e-25 119.4 161 44.1
BcaC02g11751 Brassica carinata HOM05D004809 ORTHO05D006732 3.9e-25 118.6 146 45.9
BolC4t22822H Brassica oleracea HOM05D004809 ORTHO05D006732 3.9e-25 118.6 146 45.9
Zm00001eb063700 Zea mays HOM05D004809 ORTHO05D006732 3.9e-25 118.6 145 44.8
BcaB02g09358 Brassica carinata HOM05D004809 ORTHO05D006732 1.5e-24 116.7 146 44.5
HPP92_026096 Vanilla planifolia HOM05D004809 ORTHO05D006732 2.6e-24 115.9 147 40.8
Hund06767 Selenicereus undatus HOM05D004809 ORTHO05D006732 3.3e-24 115.5 117 50.4
ATR0820G085 Amborella trichopoda HOM05D004809 ORTHO05D006732 7.4e-24 114.4 147 44.9
CARHR130660 Cardamine hirsuta HOM05D004809 ORTHO05D006732 1.7e-23 113.2 147 47.6
A05p09490 Brassica napus HOM05D004809 ORTHO05D006732 3.7e-23 112.1 142 45.1
BraA05t19899Z Brassica rapa HOM05D004809 ORTHO05D006732 3.7e-23 112.1 142 45.1
HanXRQChr05g0146831 Helianthus annuus HOM05D004809 ORTHO05D006732 3.7e-23 112.1 125 49.6
Thhalv10017936m.g Eutrema salsugineum HOM05D004809 ORTHO05D006732 3.1e-22 109.0 142 44.4
Carub.0004s1815 Capsella rubella HOM05D004809 ORTHO05D006732 4.1e-22 108.6 146 43.8
COL.COLO4_20964 Corchorus olitorius HOM05D004809 ORTHO05D006732 5.3e-22 108.2 98 55.1
Sp4g18640 Schrenkiella parvula HOM05D004809 ORTHO05D006732 4.5e-21 105.1 146 43.8
Ah.04g163730 Amaranthus hybridus HOM05D004809 ORTHO05D006732 1.7e-20 103.2 146 41.1
AT2G36360 Arabidopsis thaliana HOM05D004809 ORTHO05D006732 3.8e-20 102.1 139 42.4
C04p11750 Brassica napus HOM05D004809 ORTHO05D006732 5.0e-20 101.7 167 38.3
EL10Ac4g08666 Beta vulgaris HOM05D004809 ORTHO05D006732 1.9e-19 99.8 132 41.7
Ciclev10031499m.g Citrus clementina HOM05D004809 ORTHO05D006732 2.5e-19 99.4 95 55.8
vmacro07229 Vaccinium macrocarpon HOM05D004809 ORTHO05D006732 4.2e-19 98.6 97 55.7
FvH4_7g05461 Fragaria vesca HOM05D004809 ORTHO05D035441 8.0e-18 94.4 48 89.6
FAN21G2933 Fragaria x ananassa HOM05D004809 ORTHO05D035441 8.0e-18 94.4 48 89.6
CSS0021630 Camellia sinensis var. sinensis HOM05D004809 ORTHO05D006732 1.4e-17 93.6 88 60.2
Duzib114G0297 Durio zibethinus HOM05D004809 ORTHO05D006732 1.4e-17 93.6 94 52.1
PGSC0003DMG400019479 Solanum tuberosum HOM05D004809 ORTHO05D006732 6.7e-17 91.3 93 52.7
Mapoly0052s0089 Marchantia polymorpha HOM05D004809 ORTHO05D006732 1.5e-16 90.1 147 39.5
unitig_0.g851 Utricularia gibba HOM05D004809 ORTHO05D006732 3.3e-16 89.0 144 41.0
Pp3c12_16110 Physcomitrium patens HOM05D004809 ORTHO05D006732 9.7e-16 87.4 148 36.5
Pp3c12_16113 Physcomitrium patens HOM05D004809 ORTHO05D006732 9.7e-16 87.4 148 36.5
Aqoxy4G02860 Aquilegia oxysepala HOM05D004809 ORTHO05D006732 4.8e-15 85.1 120 41.7
AUR62041546 Chenopodium quinoa HOM05D004809 ORTHO05D006732 6.3e-15 84.7 133 41.4
SMO174G0255 Selaginella moellendorffii HOM05D004809 ORTHO05D006732 2.2e-12 76.3 148 36.5
Aa31LG5G21540 Aethionema arabicum HOM05D004809 ORTHO05D006732 4.7e-10 68.6 99 44.4
AL4G32520 Arabidopsis lyrata HOM05D004809 ORTHO05D006732 4.0e-09 65.5 92 43.5
Lsat_1_v5_gn_3_126940 Lactuca sativa HOM05D004809 ORTHO05D006732 1.5e-08 63.5 79 43.0
SHI21283 Sapria himalayana HOM05D004809 ORTHO05D006732 7.5e-08 61.2 91 44.0
CBR_g30411 Chara braunii HOM05D004809 ORTHO05D006732 8.2e-07 57.8 175 29.7
Psat6g176720 Pisum sativum HOM05D004809 ORTHO05D006732 4.1e-06 55.5 48 56.2


User provided reference genes

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