Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0333901 Rosa chinensis HOM05D006575 ORTHO05D008251 9.3e-107 390.2 193 100.0
FvH4_7g06280 Fragaria vesca HOM05D006575 ORTHO05D008251 7.7e-61 237.7 216 60.6
RcHm_v2.0_Chr1g0334121 Rosa chinensis HOM05D006575 ORTHO05D008251 7.7e-61 237.7 216 59.7
MD07G1071500 Malus domestica HOM05D006575 ORTHO05D008251 2.2e-44 183.0 230 46.5
Prupe.2G089200 Prunus persica HOM05D006575 ORTHO05D008251 7.2e-43 177.9 229 46.3
QL04p041148 Quercus lobata HOM05D006575 ORTHO05D008251 4.5e-37 158.7 220 43.6
Atru.chr12.966 Acer truncatum HOM05D006575 ORTHO05D008251 1.9e-35 153.3 158 51.9
Potri.010G234600 Populus trichocarpa HOM05D006575 ORTHO05D008251 1.6e-34 150.2 152 53.3
Ciclev10031399m.g Citrus clementina HOM05D006575 ORTHO05D008251 3.6e-34 149.1 158 54.4
Cfa011222 Carpinus fangiana HOM05D006575 ORTHO05D008251 3.0e-33 146.0 227 39.2
Dinv30658 Davidia involucrata HOM05D006575 ORTHO05D008251 1.3e-31 140.6 247 38.1
Haze_02613 Corylus avellana HOM05D006575 ORTHO05D008251 1.7e-31 140.2 227 38.3
Sabra10G0181900 Salix brachista HOM05D006575 ORTHO05D008251 1.7e-31 140.2 152 53.3
CiPaw.14G028500 Carya illinoinensis HOM05D006575 ORTHO05D008251 2.2e-31 139.8 158 48.7
FAN03G1113 Fragaria x ananassa HOM05D006575 ORTHO05D008251 3.7e-31 139.0 248 40.3
CSS0046856 Camellia sinensis var. sinensis HOM05D006575 ORTHO05D008251 2.4e-30 136.3 166 45.8
Actinidia18575 Actinidia chinensis HOM05D006575 ORTHO05D008251 5.4e-30 135.2 171 44.4
COL.COLO4_27239 Corchorus olitorius HOM05D006575 ORTHO05D008251 5.4e-30 135.2 138 49.3
Thecc.10G101600 Theobroma cacao HOM05D006575 ORTHO05D008251 5.4e-30 135.2 138 50.0
Duzib114G1029 Durio zibethinus HOM05D006575 ORTHO05D008251 2.0e-29 133.3 138 52.2
TWI38G0941 Tripterygium wilfordii HOM05D006575 ORTHO05D008251 1.3e-28 130.6 159 48.4
CANSAT56G2424 Cannabis sativa HOM05D006575 ORTHO05D008251 5.0e-28 128.6 150 46.7
QL08p056133 Quercus lobata HOM05D006575 ORTHO05D008251 5.0e-28 128.6 151 46.4
Rhsim03G0106300 Rhododendron simsii HOM05D006575 ORTHO05D008251 1.5e-27 127.1 162 46.9
Gohir.A09G221300 Gossypium hirsutum HOM05D006575 ORTHO05D008251 1.9e-27 126.7 138 50.0
GSVIVG01034712001 Vitis vinifera HOM05D006575 ORTHO05D008251 1.9e-27 126.7 143 49.7
Manes.07G130800 Manihot esculenta HOM05D006575 ORTHO05D008251 2.5e-27 126.3 153 46.4
Eucgr.G02713 Eucalyptus grandis HOM05D006575 ORTHO05D008251 4.3e-27 125.6 152 46.7
Gorai.006G244900 Gossypium raimondii HOM05D006575 ORTHO05D008251 5.6e-27 125.2 138 49.3
CsaV3_3G002140 Cucumis sativus L. HOM05D006575 ORTHO05D008251 2.8e-26 122.9 147 46.9
PGR142G1213 Punica granatum HOM05D006575 ORTHO05D008251 2.8e-26 122.9 155 47.1
Cc02_g10220 Coffea canephora HOM05D006575 ORTHO05D008251 6.1e-26 121.7 147 46.9
Glyma.01G147000 Glycine max HOM05D006575 ORTHO05D008251 1.0e-25 120.9 160 43.1
Glyma.10G113000 Glycine max HOM05D006575 ORTHO05D008251 1.0e-25 120.9 160 43.1
ClCG00G004800 Citrullus lanatus HOM05D006575 ORTHO05D008251 1.4e-25 120.6 147 46.9
ClCG10G002050 Citrullus lanatus HOM05D006575 ORTHO05D008251 1.4e-25 120.6 147 46.9
Lj2C27T14 Lonicera japonica HOM05D006575 ORTHO05D008251 1.4e-25 120.6 168 42.9
Hma1.2p1_0026F.1_g016740 Hydrangea macrophylla HOM05D006575 ORTHO05D008251 2.3e-25 119.8 147 45.6
Peaxi162Scf00244g00053 Petunia axillaris HOM05D006575 ORTHO05D008251 2.3e-25 119.8 154 45.5
CARHR208680 Cardamine hirsuta HOM05D006575 ORTHO05D008251 3.1e-25 119.4 146 44.5
DCAR_019027 Daucus carota HOM05D006575 ORTHO05D008251 4.0e-25 119.0 142 47.2
Psat6g093080 Pisum sativum HOM05D006575 ORTHO05D008251 4.0e-25 119.0 153 43.1
Ca_05248_v3 Cicer arietinum L. HOM05D006575 ORTHO05D008251 6.8e-25 118.2 159 41.5
EL10Ac1g02057 Beta vulgaris HOM05D006575 ORTHO05D008251 8.9e-25 117.9 161 43.5
AUR62036741 Chenopodium quinoa HOM05D006575 ORTHO05D008251 1.5e-24 117.1 164 42.7
TPR.G22706 Trifolium pratense HOM05D006575 ORTHO05D008251 1.5e-24 117.1 158 41.8
Phvul.007G246400 Phaseolus vulgaris HOM05D006575 ORTHO05D008251 2.6e-24 116.3 153 40.5
MELO3C013886.2 Cucumis melo HOM05D006575 ORTHO05D008251 4.4e-24 115.5 147 45.6
TAR623G0136 Trochodendron aralioides HOM05D006575 ORTHO05D008251 4.4e-24 115.5 158 43.7
AUR62013857 Chenopodium quinoa HOM05D006575 ORTHO05D008251 5.8e-24 115.2 159 41.5
Medtr1g050528 Medicago truncatula HOM05D006575 ORTHO05D008251 9.8e-24 114.4 162 42.0
Lalb_Chr01g0010311 Lupinus albus HOM05D006575 ORTHO05D008251 1.3e-23 114.0 156 43.6
MELO3C019882.2 Cucumis melo HOM05D006575 ORTHO05D008251 2.2e-23 113.2 147 44.2
ECA238G0587 Erigeron canadensis HOM05D006575 ORTHO05D008251 2.9e-23 112.8 148 45.3
Sed0005632 Sechium edule HOM05D006575 ORTHO05D008251 2.9e-23 112.8 147 46.3
AT5G04610 Arabidopsis thaliana HOM05D006575 ORTHO05D008251 4.9e-23 112.1 146 42.5
Nn6g35050 Nelumbo nucifera HOM05D006575 ORTHO05D008251 4.9e-23 112.1 160 41.9
Sp6g38170 Schrenkiella parvula HOM05D006575 ORTHO05D008251 8.3e-23 111.3 146 41.8
Lsat_1_v5_gn_2_102621 Lactuca sativa HOM05D006575 ORTHO05D008251 1.1e-22 110.9 147 40.8
Sc20g0001310 Simmondsia chinensis HOM05D006575 ORTHO05D008251 1.9e-22 110.2 157 43.9
AL6G14240 Arabidopsis lyrata HOM05D006575 ORTHO05D008251 2.4e-22 109.8 146 42.5
Carub.0006s0353 Capsella rubella HOM05D006575 ORTHO05D008251 2.4e-22 109.8 146 41.1
HanXRQChr14g0456911 Helianthus annuus HOM05D006575 ORTHO05D008251 2.4e-22 109.8 147 43.5
PGSC0003DMG400027314 Solanum tuberosum HOM05D006575 ORTHO05D008251 2.4e-22 109.8 145 41.4
arahy.Tifrunner.gnm1.ann1.G6FTBS Arachis hypogaea HOM05D006575 ORTHO05D008251 3.2e-22 109.4 157 42.7
Nitab4.5_0002259g0040 Nicotiana tabacum HOM05D006575 ORTHO05D008251 5.4e-22 108.6 144 41.0
RcHm_v2.0_Chr1g0335121 Rosa chinensis HOM05D006575 ORTHO05D008251 7.0e-22 108.2 94 62.8
Lsat_1_v5_gn_2_6840 Lactuca sativa HOM05D006575 ORTHO05D008251 9.2e-22 107.8 149 40.3
Sopen11g003390 Solanum pennellii HOM05D006575 ORTHO05D008251 9.2e-22 107.8 143 41.3
Lj5g0027739 Lotus japonicus HOM05D006575 ORTHO05D008251 1.2e-21 107.5 156 40.4
Oeu030489.1 Olea europaea HOM05D006575 ORTHO05D008251 1.2e-21 107.5 147 44.2
Thhalv10013565m.g Eutrema salsugineum HOM05D006575 ORTHO05D008251 2.7e-21 106.3 146 40.4
Solyc11g007550.1 Solanum lycopersicum HOM05D006575 ORTHO05D008251 6.0e-21 105.1 143 39.9
C09p72180 Brassica napus HOM05D006575 ORTHO05D008251 7.8e-21 104.8 146 42.5
CAN.G135.74 Capsicum annuum HOM05D006575 ORTHO05D008251 7.8e-21 104.8 143 39.9
VMungo0720G0428 Vigna mungo HOM05D006575 ORTHO05D008251 1.0e-20 104.4 147 38.8
Nitab4.5_0001807g0050 Nicotiana tabacum HOM05D006575 ORTHO05D008251 1.7e-20 103.6 144 39.6
Aa31LG11G5480 Aethionema arabicum HOM05D006575 ORTHO05D008251 2.3e-20 103.2 147 45.6
Aqoxy1G00940 Aquilegia oxysepala HOM05D006575 ORTHO05D008251 2.3e-20 103.2 141 41.8
MSTRG.411 Avicennia marina HOM05D006575 ORTHO05D008251 2.5e-19 99.8 138 42.0
Lsat_1_v5_gn_2_102601 Lactuca sativa HOM05D006575 ORTHO05D008251 2.5e-19 99.8 153 38.6
PSO765G0131 Papaver somniferum HOM05D006575 ORTHO05D008251 2.5e-19 99.8 160 40.0
THA.LOC104816459 Tarenaya hassleriana HOM05D006575 ORTHO05D008251 3.3e-19 99.4 143 43.4
BolC9t59962H Brassica oleracea HOM05D006575 ORTHO05D008251 5.6e-19 98.6 146 40.4
FvH4_7g06281 Fragaria vesca HOM05D006575 ORTHO05D008251 7.3e-19 98.2 98 54.1
BcaC06g32171 Brassica carinata HOM05D006575 ORTHO05D008251 9.5e-19 97.8 146 40.4
CDE11G0034 Ceratophyllum demersum HOM05D006575 ORTHO05D008251 9.5e-19 97.8 143 37.8
Lsat_1_v5_gn_2_102541 Lactuca sativa HOM05D006575 ORTHO05D008251 9.5e-19 97.8 148 38.5
PSO349G0192 Papaver somniferum HOM05D006575 ORTHO05D008251 9.5e-19 97.8 160 40.0
BraA10t45195Z Brassica rapa HOM05D006575 ORTHO05D008251 2.1e-18 96.7 146 41.1
Lsat_1_v5_gn_2_102500 Lactuca sativa HOM05D006575 ORTHO05D008251 2.8e-18 96.3 147 38.8
SHI21275 Sapria himalayana HOM05D006575 ORTHO05D008251 6.2e-18 95.1 141 40.4
A10p31490 Brassica napus HOM05D006575 ORTHO05D008251 1.8e-17 93.6 146 40.4
SGA_v2.0_scaffold8G04418 Striga asiatica HOM05D006575 ORTHO05D008251 4.0e-17 92.4 148 37.2
MBI17_g11659_MAGBIO Magnolia biondii HOM05D006575 ORTHO05D008251 6.8e-17 91.7 197 33.5
Dinv25349 Davidia involucrata HOM05D006368 ORTHO05D006739 2.6e-16 89.7 95 50.5
Migut.F01657 Erythranthe guttata HOM05D006575 ORTHO05D008251 4.4e-16 89.0 148 37.8
Os08g0520400 Oryza sativa ssp. japonica HOM05D006575 ORTHO05D008251 5.8e-16 88.6 149 38.3
Zm00001eb035650 Zea mays HOM05D006575 ORTHO05D008251 3.7e-15 85.9 149 38.9
MBI17_g15051_MAGBIO Magnolia biondii HOM05D006575 ORTHO05D008251 5.4e-14 82.0 69 58.0
BcaC06g32169 Brassica carinata HOM05D006575 ORTHO05D008251 2.1e-13 80.1 146 37.0
ATR0820G127 Amborella trichopoda HOM05D006575 ORTHO05D008251 1.7e-12 77.0 177 28.8
unitig_578.g16358 Utricularia gibba HOM05D006575 ORTHO05D008251 1.9e-11 73.6 127 41.7
Solyc11g007820.1 Solanum lycopersicum HOM05D006575 ORTHO05D008251 5.6e-11 72.0 152 30.9
Sopen11g003680 Solanum pennellii HOM05D006575 ORTHO05D008251 1.2e-10 70.9 152 30.3
Ah.00g000570 Amaranthus hybridus HOM05D006575 ORTHO05D008251 4.7e-10 68.9 144 32.6
Migut.N00411 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.4e-09 67.4 124 33.1
Migut.N00409 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.8e-09 67.0 124 33.1
Pp3c19_2810 Physcomitrium patens HOM05D006575 ORTHO05D008251 2.3e-09 66.6 139 29.5
Migut.N00415 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.0e-09 65.9 124 29.8
Ah.13g078040 Amaranthus hybridus HOM05D003998 ORTHO05D005144 5.2e-09 65.5 141 27.7
SEGI_19001 Sequoiadendron giganteum HOM05D006575 ORTHO05D008251 5.2e-09 65.5 80 46.2
GSVIVG01020986001 Vitis vinifera HOM05D003998 ORTHO05D005144 1.2e-08 64.3 142 26.1
Migut.I00433 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.5e-08 63.9 125 29.6
Migut.F01776 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.0e-08 63.5 124 30.6
Peaxi162Scf00047g00340 Petunia axillaris HOM05D003998 ORTHO05D005144 2.0e-08 63.5 124 30.6
Zm00001eb420660 Zea mays HOM05D003998 ORTHO05D005144 2.0e-08 63.5 124 29.0
Migut.H01109 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.6e-08 63.2 126 31.7
Sc13g0000280 Simmondsia chinensis HOM05D003998 ORTHO05D005144 2.6e-08 63.2 139 29.5
Migut.N00410 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.4e-08 62.4 128 31.2
Migut.N00412 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.4e-08 62.4 125 32.0
SalBow3G3008 Salvia bowleyana HOM05D003998 ORTHO05D005144 5.8e-08 62.0 124 28.2
CANSAT78G0640 Cannabis sativa HOM05D003998 ORTHO05D005144 7.6e-08 61.6 135 28.1
Gohir.A01G175301 Gossypium hirsutum HOM05D003998 ORTHO05D005144 7.6e-08 61.6 135 25.9
Gohir.A03G104400 Gossypium hirsutum HOM05D003998 ORTHO05D005144 7.6e-08 61.6 135 25.9
Gohir.A10G130900 Gossypium hirsutum HOM05D003998 ORTHO05D005144 7.6e-08 61.6 135 25.9
Gohir.D02G024300 Gossypium hirsutum HOM05D003998 ORTHO05D005144 7.6e-08 61.6 135 25.9
Cc03_g08110 Coffea canephora HOM05D003998 ORTHO05D005144 9.9e-08 61.2 182 26.4
Hund24398 Selenicereus undatus HOM05D003998 ORTHO05D005144 9.9e-08 61.2 143 29.4
Actinidia35854 Actinidia chinensis HOM05D003998 ORTHO05D005144 1.3e-07 60.8 140 26.4
Migut.B00567 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.3e-07 60.8 118 33.1
Gohir.A02G020406 Gossypium hirsutum HOM05D003998 ORTHO05D005144 1.3e-07 60.8 135 25.9
Lsat_1_v5_gn_2_46500 Lactuca sativa HOM05D003998 ORTHO05D005144 1.3e-07 60.8 127 25.2
Nitab4.5_0000401g0150 Nicotiana tabacum HOM05D003998 ORTHO05D005144 1.3e-07 60.8 164 25.0
Haze_11635 Corylus avellana HOM05D003998 ORTHO05D005144 1.7e-07 60.5 207 23.7
Gohir.A13G128800 Gossypium hirsutum HOM05D003998 ORTHO05D005144 1.7e-07 60.5 135 25.9
CSS0005254 Camellia sinensis var. sinensis HOM05D003998 ORTHO05D005144 2.2e-07 60.1 149 23.5
Gorai.005G030200 Gossypium raimondii HOM05D003998 ORTHO05D005144 2.2e-07 60.1 135 25.9
Mapoly0019s0002 Marchantia polymorpha HOM05D006575 ORTHO05D008251 2.2e-07 60.1 65 44.6
PSO017G6005 Papaver somniferum HOM05D003998 ORTHO05D005144 2.2e-07 60.1 124 25.0
PSO063G6533 Papaver somniferum HOM05D003998 ORTHO05D005144 2.2e-07 60.1 124 25.0
Aqoxy2G03902 Aquilegia oxysepala HOM05D003998 ORTHO05D005144 2.9e-07 59.7 68 36.8
EL10Ac3g07474 Beta vulgaris HOM05D003998 ORTHO05D005144 2.9e-07 59.7 140 27.1
Migut.F01720 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.9e-07 59.7 107 33.6
unitig_22.g6826 Utricularia gibba HOM05D003998 ORTHO05D005144 2.9e-07 59.7 125 32.0
MELO3C006304.2 Cucumis melo HOM05D003998 ORTHO05D005144 3.7e-07 59.3 129 24.8
MD01G1010300 Malus domestica HOM05D003998 ORTHO05D005144 3.7e-07 59.3 138 26.1
MD04G1013700 Malus domestica HOM05D003998 ORTHO05D005144 3.7e-07 59.3 138 26.1
Os04g0379300 Oryza sativa ssp. japonica HOM05D003998 ORTHO05D005144 3.7e-07 59.3 124 25.8
Cfa014947 Carpinus fangiana HOM05D003998 ORTHO05D005144 4.9e-07 58.9 207 23.2
AUR62018577 Chenopodium quinoa HOM05D003998 ORTHO05D005144 4.9e-07 58.9 161 26.1
Migut.N00785 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.9e-07 58.9 124 28.2
Atru.chr4.1608 Acer truncatum HOM05D003998 ORTHO05D005144 6.4e-07 58.5 88 29.5
MSTRG.21978 Avicennia marina HOM05D003998 ORTHO05D005144 6.4e-07 58.5 128 27.3
Nitab4.5_0004231g0010 Nicotiana tabacum HOM05D003998 ORTHO05D005144 6.4e-07 58.5 142 26.1
SGA_v2.0_scaffold128G34122 Striga asiatica HOM05D003998 ORTHO05D005144 6.4e-07 58.5 124 26.6
ATR0605G199 Amborella trichopoda HOM05D003998 ORTHO05D005144 8.4e-07 58.2 135 27.4
Manes.15G055500 Manihot esculenta HOM05D003998 ORTHO05D005144 8.4e-07 58.2 143 23.8
HanXRQChr15g0488261 Helianthus annuus HOM05D003998 ORTHO05D005144 1.1e-06 57.8 153 27.5
Sp4g14180 Schrenkiella parvula HOM05D003998 ORTHO05D005144 1.1e-06 57.8 142 26.1
Lj6A454G39 Lonicera japonica HOM05D003998 ORTHO05D005144 1.4e-06 57.4 165 26.1
Mapoly0151s0004 Marchantia polymorpha HOM05D003998 ORTHO05D005144 1.4e-06 57.4 75 33.3
PGR083G0268 Punica granatum HOM05D003998 ORTHO05D005144 1.4e-06 57.4 128 28.1
TAR362G0495 Trochodendron aralioides HOM05D003998 ORTHO05D005144 1.4e-06 57.4 68 32.4
CsaV3_3G010860 Cucumis sativus L. HOM05D003998 ORTHO05D005144 1.9e-06 57.0 129 24.0
Dinv38203 Davidia involucrata HOM05D003998 ORTHO05D005144 1.9e-06 57.0 111 27.9
CAN.G1648.3 Capsicum annuum HOM05D003998 ORTHO05D005144 2.4e-06 56.6 135 27.4
Lj6C491G2 Lonicera japonica HOM05D003998 ORTHO05D005144 2.4e-06 56.6 165 26.1
MBI11_g07440_MAGBIO Magnolia biondii HOM05D003998 ORTHO05D005144 2.4e-06 56.6 68 32.4
Sabra16G0201000 Salix brachista HOM05D003998 ORTHO05D005144 5.4e-06 55.5 145 25.5
ClCG05G003230 Citrullus lanatus HOM05D003998 ORTHO05D005144 7.1e-06 55.1 131 22.9
Migut.I00432 Erythranthe guttata HOM05D003998 ORTHO05D005144 7.1e-06 55.1 120 30.0
Migut.N00414 Erythranthe guttata HOM05D003998 ORTHO05D005144 9.2e-06 54.7 105 31.4


User provided reference genes

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