Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0333781 Rosa chinensis HOM05D000010 ORTHO05D340609 5.5e-52 207.2 96 100.0
FAN06G2624 Fragaria x ananassa HOM05D000010 ORTHO05D025467 1.5e-20 102.8 70 67.1
RcHm_v2.0_Chr1g0324821 Rosa chinensis HOM05D000010 ORTHO05D025467 1.5e-20 102.8 69 72.5
FvH4_7g18020 Fragaria vesca HOM05D000010 ORTHO05D025467 1.9e-20 102.4 54 81.5
RcHm_v2.0_Chr1g0361571 Rosa chinensis HOM05D000010 ORTHO05D342701 3.6e-19 98.2 54 77.8
FAN01G2266 Fragaria x ananassa HOM05D000010 ORTHO05D025467 3.7e-16 88.2 54 70.4
FAN05G0679 Fragaria x ananassa HOM05D000010 ORTHO05D206877 6.4e-16 87.4 70 60.0
FAN05G2987 Fragaria x ananassa HOM05D000010 ORTHO05D211094 6.4e-16 87.4 70 60.0
RcHm_v2.0_Chr1g0361611 Rosa chinensis HOM05D000010 ORTHO05D346104 1.4e-15 86.3 56 69.6
FAN10G4189 Fragaria x ananassa HOM05D000010 ORTHO05D025467 3.5e-14 81.6 48 72.9
RcHm_v2.0_Chr1g0333721 Rosa chinensis HOM05D000010 ORTHO05D012105 3.9e-13 78.2 60 60.0
RcHm_v2.0_Chr1g0361661 Rosa chinensis HOM05D000010 ORTHO05D348485 2.5e-12 75.5 57 59.6
FAN03G0388 Fragaria x ananassa HOM05D000010 ORTHO05D012105 3.3e-12 75.1 60 58.3
RcHm_v2.0_Chr1g0361681 Rosa chinensis HOM05D000010 ORTHO05D342235 3.3e-12 75.1 73 49.3
FAN06G2662 Fragaria x ananassa HOM05D000010 ORTHO05D012105 9.6e-12 73.6 60 58.3
FAN10G1854 Fragaria x ananassa HOM05D000010 ORTHO05D012105 1.2e-11 73.2 60 58.3
FAN10G1891 Fragaria x ananassa HOM05D000010 ORTHO05D012105 1.6e-11 72.8 56 62.5
FvH4_7g18260 Fragaria vesca HOM05D000010 ORTHO05D012105 2.8e-11 72.0 60 56.7
FAN06G1407 Fragaria x ananassa HOM05D000010 ORTHO05D012105 2.8e-11 72.0 60 56.7
RcHm_v2.0_Chr1g0333801 Rosa chinensis HOM05D000010 ORTHO05D344466 2.8e-11 72.0 57 59.6
FAN06G1040 Fragaria x ananassa HOM05D000010 ORTHO05D012105 3.6e-11 71.6 61 59.0
RcHm_v2.0_Chr1g0361601 Rosa chinensis HOM05D000010 ORTHO05D346683 4.7e-11 71.2 57 57.9
FAN03G2607 Fragaria x ananassa HOM05D000010 ORTHO05D012105 8.1e-11 70.5 61 57.4
FAN06G0079 Fragaria x ananassa HOM05D000010 ORTHO05D012105 1.1e-10 70.1 55 60.0
RcHm_v2.0_Chr1g0361531 Rosa chinensis HOM05D000010 ORTHO05D012105 1.4e-10 69.7 60 53.3
FAN01G0277 Fragaria x ananassa HOM05D000010 ORTHO05D012105 1.2e-09 66.6 60 55.0
FAN01G1892 Fragaria x ananassa HOM05D000010 ORTHO05D012105 1.2e-09 66.6 60 55.0
RcHm_v2.0_Chr1g0361471 Rosa chinensis HOM05D000010 ORTHO05D012105 7.6e-09 63.9 57 56.1
FAN10G2387 Fragaria x ananassa HOM05D000010 ORTHO05D012105 9.9e-09 63.5 53 60.4
FAN06G0242 Fragaria x ananassa HOM05D000010 ORTHO05D012105 2.9e-08 62.0 53 58.5
FAN06G2924 Fragaria x ananassa HOM05D000010 ORTHO05D012105 2.9e-08 62.0 53 58.5
FvH4_7g18210 Fragaria vesca HOM05D000010 ORTHO05D012105 8.4e-08 60.5 53 56.6
FAN01G3100 Fragaria x ananassa HOM05D000010 ORTHO05D012105 8.4e-08 60.5 53 56.6
RcHm_v2.0_Chr1g0361391 Rosa chinensis HOM05D000010 ORTHO05D012105 1.4e-07 59.7 61 45.9
FAN06G1259 Fragaria x ananassa HOM05D000010 ORTHO05D012105 1.9e-07 59.3 53 54.7
RcHm_v2.0_Chr1g0333731 Rosa chinensis HOM05D000010 ORTHO05D011899 2.4e-07 58.9 51 54.9
RcHm_v2.0_Chr1g0361631 Rosa chinensis HOM05D000010 ORTHO05D011899 2.4e-07 58.9 51 56.9
Prupe.2G202500 Prunus persica HOM05D000010 ORTHO05D011899 3.2e-07 58.5 52 51.9
Prupe.2G202000 Prunus persica HOM05D000010 ORTHO05D016337 4.2e-07 58.2 49 57.1
RcHm_v2.0_Chr1g0361441 Rosa chinensis HOM05D000010 ORTHO05D012105 5.4e-07 57.8 56 53.6
CARHR200290 Cardamine hirsuta HOM05D000010 ORTHO05D001550 9.3e-07 57.0 54 44.4
MD07G1163400 Malus domestica HOM05D000010 ORTHO05D015705 1.2e-06 56.6 55 47.3
Prupe.2G202600 Prunus persica HOM05D000010 ORTHO05D009770 1.6e-06 56.2 52 50.0
AL6G23790 Arabidopsis lyrata HOM05D000010 ORTHO05D001550 2.1e-06 55.8 54 42.6
AT5G13180 Arabidopsis thaliana HOM05D000010 ORTHO05D001550 2.1e-06 55.8 54 42.6
Carub.0006s1135 Capsella rubella HOM05D000010 ORTHO05D001550 2.1e-06 55.8 54 42.6
Cfa009410 Carpinus fangiana HOM05D000010 ORTHO05D001550 2.1e-06 55.8 58 43.1
Lsat_1_v5_gn_9_42720 Lactuca sativa HOM05D000010 ORTHO05D004316 2.7e-06 55.5 53 52.8
HanXRQChr15g0474211 Helianthus annuus HOM05D000010 ORTHO05D000151 4.6e-06 54.7 62 40.3
Aqoxy5G03236 Aquilegia oxysepala HOM05D000010 ORTHO05D001550 6.0e-06 54.3 54 42.6
MD07G1164000 Malus domestica HOM05D000010 ORTHO05D015705 6.0e-06 54.3 51 51.0


User provided reference genes

Program Settings