Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 0.0e+00 3296.1 1729 100.0
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 2407.9 1830 73.2
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 2400.9 1832 72.1
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 2396.7 1829 73.5
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 2395.9 1829 72.8
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 0.0e+00 2393.2 1832 72.7
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 0.0e+00 1305.0 1806 48.6
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 0.0e+00 1276.5 1807 48.5
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 0.0e+00 1181.8 1859 46.6
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 0.0e+00 1171.0 1893 45.3
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 1.5e-248 864.4 1903 38.6
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.8e-222 777.7 1928 35.7
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.6e-213 748.0 1884 36.9
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 1.8e-164 585.1 1884 32.6
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 3.0e-156 557.8 1898 32.4
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 7.4e-155 553.1 1820 31.9
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 1.0e-151 542.7 1808 32.4
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 1.7e-151 542.0 1887 32.7
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 7.9e-149 533.1 1928 31.8
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 8.8e-148 529.6 1791 31.8
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.6e-147 528.1 1928 32.0
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 1.4e-145 522.3 1779 33.7
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 7.7e-144 516.5 1747 31.3
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 1.1e-139 502.7 2069 30.2
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.5e-139 502.3 1836 30.4
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.8e-137 495.4 1871 31.9
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.0e-136 491.9 1818 30.4
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.7e-133 481.5 1701 31.9
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 4.4e-131 474.2 1908 31.1
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.2e-130 471.9 1900 30.8
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 7.0e-129 466.8 1775 30.5
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 9.1e-129 466.5 2005 30.4
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 7.5e-123 446.8 1779 32.0
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 4.1e-121 441.0 507 59.4
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 5.4e-121 440.7 1752 30.8
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.0e-119 436.4 2122 28.7
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.0e-119 436.4 1826 29.5
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.3e-119 435.3 1773 30.7
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.8e-116 423.7 1695 31.0
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 9.2e-113 413.3 1792 27.5
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 9.5e-110 403.3 1878 27.6
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 6.1e-109 400.6 1848 28.5
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 2.6e-107 395.2 1825 29.1
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 3.4e-107 394.8 1783 29.7
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 7.5e-107 393.7 1805 28.0
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 6.0e-104 384.0 460 60.9
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 9.5e-102 376.7 1768 28.7
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 4.4e-99 367.9 1859 28.2
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 2.9e-98 365.2 1800 27.6
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 6.4e-98 364.0 1572 29.7
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 3.5e-96 358.2 1860 28.5
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 6.0e-96 357.5 1867 27.7
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.0e-95 356.7 1842 28.0
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 1.7e-95 355.9 1819 26.8
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 6.6e-95 354.0 1793 29.1
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 1.2e-93 349.7 1890 27.5
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 5.2e-92 344.4 1810 28.9
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 1.2e-91 343.2 1891 26.5
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 3.5e-88 331.6 623 46.2
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 8.6e-87 327.0 1840 27.5
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.9e-86 325.9 878 36.4
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 2.5e-86 325.5 1823 27.0
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 2.5e-86 325.5 1904 27.5
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 4.3e-86 324.7 1815 26.8
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 5.6e-86 324.3 760 37.5
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 1.6e-85 322.8 1780 27.9
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 9.9e-83 313.5 1861 27.7
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 9.2e-81 307.0 490 52.2
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 3.9e-79 301.6 2023 26.7
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 3.3e-78 298.5 880 35.5
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 3.1e-76 292.0 1858 26.4
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 3.1e-76 292.0 833 35.3
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 9.0e-76 290.4 857 32.4
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 1.3e-74 286.6 1941 26.0
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 4.9e-74 284.6 1661 26.9
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 9.3e-73 280.4 1564 25.8
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 2.1e-72 279.3 1889 25.8
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.7e-72 278.9 454 49.1
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 2.8e-69 268.9 1787 26.1
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 3.6e-69 268.5 1793 27.4
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 8.1e-69 267.3 824 33.5
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 5.3e-68 264.6 823 33.5
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 1.2e-67 263.5 1830 26.9
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 1.7e-66 259.6 1667 25.1
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 2.2e-66 259.2 1829 26.1
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 3.2e-65 255.4 1867 26.2
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 3.2e-65 255.4 1827 27.0
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 5.4e-65 254.6 1948 27.6
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 4.6e-64 251.5 1880 27.5
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 1.9e-62 246.1 1935 26.3
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 3.7e-61 241.9 911 34.1
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 6.2e-61 241.1 621 36.7
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.1e-57 230.3 766 30.8
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 4.2e-57 228.4 1920 25.0
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 7.1e-57 227.6 1897 24.8
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.6e-56 226.5 851 29.8
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 3.0e-55 222.2 1816 24.4
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 5.1e-55 221.5 1038 31.7
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 3.1e-52 212.2 1894 26.1
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 1.5e-51 209.9 700 38.1
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 7.6e-51 207.6 692 37.9
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 1.7e-50 206.5 630 37.8
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 2.9e-50 205.7 1871 26.0
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 2.1e-48 199.5 1924 26.2
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 1.3e-47 196.8 1893 24.9
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 1.9e-46 193.0 763 32.2
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 8.2e-45 187.6 710 29.7
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 4.1e-44 185.3 922 27.3
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 7.7e-43 181.0 1668 26.6
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 2.5e-41 176.0 699 31.3
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 4.6e-40 171.8 963 27.5
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 1.4e-39 170.2 291 41.9
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.9e-34 152.5 463 32.0
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 6.1e-32 144.8 187 49.2
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 4.4e-30 138.7 632 32.6
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 2.2e-29 136.3 1942 23.7
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 6.3e-29 134.8 345 30.1
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 3.5e-27 129.0 1942 24.1
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 7.7e-27 127.9 249 59.4
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 1.1e-25 124.0 318 33.6
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 3.9e-23 115.5 383 28.5
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.9e-23 115.5 415 29.4
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.8e-21 109.4 258 34.9
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.6e-19 103.6 261 44.4
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 7.7e-19 101.3 630 27.9
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.3e-18 100.5 659 28.2
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 1.1e-17 97.4 337 30.6
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.7e-14 85.1 80 58.8
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 2.7e-11 76.3 174 34.5
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 5.5e-09 68.6 53 73.6
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 1.2e-08 67.4 402 27.4
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 2.7e-08 66.2 205 29.8
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 4.7e-08 65.5 348 34.2
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 1.4e-07 63.9 263 25.5
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 3.0e-07 62.8 249 28.9
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 4.0e-07 62.4 331 24.8
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 4.0e-07 62.4 50 68.0
Psat2g132120 Pisum sativum HOM05D004836 ORTHO05D005150 5.2e-07 62.0 221 29.0
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 1.5e-06 60.5 339 22.4


User provided reference genes

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