Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 7.8e-52 206.8 104 100.0
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 1.1e-50 203.0 104 98.1
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.3e-50 201.4 103 96.1
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.3e-50 201.4 103 96.1
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 7.3e-50 200.3 103 95.1
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 1.3e-49 199.5 104 95.2
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 9.3e-45 183.3 104 87.5
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 9.3e-45 183.3 104 87.5
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 1.2e-44 183.0 103 87.4
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 1.6e-44 182.6 104 86.5
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 1.6e-44 182.6 104 86.5
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 1.6e-44 182.6 104 86.5
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 5.6e-42 174.1 102 86.3
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 1.2e-39 166.4 87 94.3
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 1.2e-39 166.4 87 94.3
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 9.9e-39 163.3 102 77.5
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 4.2e-37 157.9 104 72.1
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 6.0e-36 154.1 104 75.0
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 1.0e-35 153.3 104 69.2
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 5.1e-35 151.0 99 75.8
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 2.5e-34 148.7 103 70.9
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 2.5e-34 148.7 103 69.9
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 1.3e-33 146.4 99 71.7
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 2.8e-33 145.2 99 71.7
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 4.8e-33 144.4 99 71.7
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 4.8e-33 144.4 99 71.7
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 6.2e-33 144.1 98 72.4
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 8.1e-33 143.7 96 75.0
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 8.1e-33 143.7 99 72.7
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 1.1e-32 143.3 104 67.3
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.4e-32 142.9 103 69.9
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 2.4e-32 142.1 99 69.7
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 2.4e-32 142.1 96 72.9
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 2.4e-32 142.1 96 72.9
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 2.4e-32 142.1 96 72.9
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 2.4e-32 142.1 96 72.9
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 2.4e-32 142.1 96 72.9
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 2.4e-32 142.1 96 72.9
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 2.4e-32 142.1 96 72.9
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 2.4e-32 142.1 96 72.9
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 2.4e-32 142.1 96 71.9
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 2.4e-32 142.1 96 72.9
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 2.4e-32 142.1 99 70.7
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 3.1e-32 141.7 96 72.9
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 3.1e-32 141.7 96 72.9
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 3.1e-32 141.7 96 72.9
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 3.1e-32 141.7 99 71.7
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 5.3e-32 141.0 96 71.9
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 5.3e-32 141.0 96 71.9
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 5.3e-32 141.0 95 72.6
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 5.3e-32 141.0 95 72.6
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 5.3e-32 141.0 96 72.9
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 5.3e-32 141.0 96 72.9
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 5.3e-32 141.0 96 72.9
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 6.9e-32 140.6 104 68.3
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 1.2e-31 139.8 96 70.8
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 1.5e-31 139.4 104 67.3
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 1.5e-31 139.4 99 69.7
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 1.5e-31 139.4 99 69.7
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 1.5e-31 139.4 99 69.7
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 1.5e-31 139.4 100 71.0
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 2.0e-31 139.0 104 67.3
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 2.0e-31 139.0 104 67.3
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 2.0e-31 139.0 104 67.3
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 2.0e-31 139.0 104 67.3
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 2.0e-31 139.0 104 67.3
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 2.6e-31 138.7 96 70.8
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 3.4e-31 138.3 99 68.7
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 4.5e-31 137.9 99 69.7
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 4.5e-31 137.9 102 65.7
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 5.8e-31 137.5 99 67.7
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 5.8e-31 137.5 99 67.7
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 5.8e-31 137.5 99 67.7
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 7.6e-31 137.1 99 70.7
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 1.0e-30 136.7 98 70.4
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 1.3e-30 136.3 99 69.7
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 1.3e-30 136.3 99 67.7
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 2.2e-30 135.6 97 69.1
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 6.5e-30 134.0 99 68.7
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 8.4e-30 133.7 99 66.7
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 8.4e-30 133.7 99 66.7
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 1.6e-28 129.4 99 68.7
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 4.6e-28 127.9 85 74.1
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 4.6e-28 127.9 87 73.6
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 6.0e-28 127.5 88 71.6
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 6.0e-28 127.5 87 71.3
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 6.7e-27 124.0 103 61.2
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 6.7e-27 124.0 99 61.6
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 7.4e-26 120.6 99 60.6
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 1.6e-25 119.4 86 68.6
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 2.8e-25 118.6 87 65.5
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 9.0e-24 113.6 94 60.6
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 1.0e-19 100.1 75 65.3
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 6.7e-19 97.4 70 68.6
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 1.9e-18 95.9 63 73.0
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 2.5e-18 95.5 71 63.4
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 9.7e-18 93.6 98 53.1
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 2.8e-17 92.0 63 71.4
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 2.8e-17 92.0 63 71.4
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 3.7e-17 91.7 62 69.4
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 6.3e-17 90.9 74 60.8
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 2.4e-16 89.0 73 63.0
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 1.2e-15 86.7 62 71.0
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 1.5e-15 86.3 59 67.8
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.5e-15 86.3 64 68.8
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 3.4e-15 85.1 62 64.5
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 3.4e-15 85.1 63 63.5
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 6.5e-14 80.9 97 44.3
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 7.2e-13 77.4 58 69.0
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 3.9e-11 71.6 53 64.2
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 8.8e-11 70.5 53 64.2
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 3.7e-09 65.1 95 41.1
Sabra16G0250800 Salix brachista HOM05D007153 ORTHO05D009081 6.3e-09 64.3 44 68.2
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 5.3e-08 61.2 71 47.9
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 6.9e-08 60.8 39 69.2
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 2.0e-07 59.3 102 37.3
Nitab4.5_0000033g0070 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.7e-06 56.2 49 57.1
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 1.7e-06 56.2 103 36.9
Lalb_Chr00c21g0405241 Lupinus albus HOM05D007099 ORTHO05D009081 5.0e-06 54.7 38 65.8
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 5.0e-06 54.7 103 35.9
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.0e-06 54.7 95 37.9
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.0e-06 54.7 95 37.9
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.0e-06 54.7 95 37.9
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.0e-06 54.7 95 37.9
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 6.5e-06 54.3 95 36.8
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 6.5e-06 54.3 95 36.8
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 6.5e-06 54.3 95 36.8
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 6.5e-06 54.3 103 35.0
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 6.5e-06 54.3 103 35.0
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 6.5e-06 54.3 95 37.9
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 8.5e-06 53.9 103 35.9
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 8.5e-06 53.9 95 35.8


User provided reference genes

Program Settings