Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 2.1e-132 475.7 238 100.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.4e-104 383.3 239 82.8
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 3.1e-104 382.1 239 83.3
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 4.5e-103 378.3 239 83.7
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-99 366.7 239 79.9
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 5.1e-99 364.8 239 79.1
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.6e-98 362.5 239 79.5
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.7e-97 359.8 236 77.5
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 2.8e-97 359.0 238 78.2
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.1e-96 355.1 239 77.8
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 5.3e-96 354.8 239 78.2
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.5e-90 336.7 231 74.5
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 7.4e-90 334.3 230 75.2
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.4e-88 329.3 238 73.5
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.7e-86 323.2 231 72.3
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.9e-85 319.7 231 71.0
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 7.2e-85 317.8 239 68.6
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 9.4e-85 317.4 234 70.1
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 1.6e-84 316.6 230 71.3
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 2.1e-84 316.2 239 68.6
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.1e-84 316.2 205 80.0
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 6.1e-84 314.7 230 69.6
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 8.0e-84 314.3 231 68.8
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.4e-83 313.5 230 70.4
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.4e-83 313.5 235 65.5
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.3e-83 312.8 231 70.1
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 2.0e-82 309.7 231 68.4
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 3.3e-82 308.9 233 68.2
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 7.5e-82 307.8 233 69.5
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.3e-81 307.0 230 69.1
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 4.8e-81 305.1 237 64.6
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 1.4e-80 303.5 234 67.1
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 2.4e-80 302.8 237 62.0
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 3.1e-80 302.4 235 62.6
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 3.1e-80 302.4 230 68.3
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 9.1e-80 300.8 230 68.7
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.6e-79 300.1 230 67.0
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.6e-79 300.1 230 66.5
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 5.9e-79 298.1 231 65.8
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 7.7e-79 297.7 231 67.1
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 1.0e-78 297.4 235 62.1
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.0e-78 297.4 230 67.0
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 2.2e-78 296.2 230 64.8
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 2.2e-78 296.2 233 62.7
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.9e-78 295.8 234 66.2
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 2.9e-78 295.8 230 65.7
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 3.8e-78 295.4 235 61.7
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 6.5e-78 294.7 230 65.2
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 6.5e-78 294.7 230 67.4
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 6.5e-78 294.7 232 64.2
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 8.5e-78 294.3 230 67.4
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 8.5e-78 294.3 230 64.8
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 8.5e-78 294.3 233 63.5
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.5e-77 293.5 230 64.3
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.5e-77 293.5 235 67.2
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 2.5e-77 292.7 235 65.1
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 2.5e-77 292.7 231 63.6
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 2.5e-77 292.7 234 61.5
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 2.5e-77 292.7 234 63.7
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 4.2e-77 292.0 231 64.5
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.2e-77 292.0 231 62.8
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 4.2e-77 292.0 231 63.6
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 4.2e-77 292.0 235 60.4
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 5.5e-77 291.6 231 64.9
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.2e-76 290.4 230 65.2
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.6e-76 290.0 226 64.2
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.6e-76 290.0 230 66.1
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 2.1e-76 289.7 234 60.7
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 2.1e-76 289.7 235 62.1
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 4.7e-76 288.5 234 63.2
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.7e-76 288.5 231 62.3
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 8.0e-76 287.7 225 64.0
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.0e-75 287.3 231 61.9
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.4e-75 287.0 212 69.3
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.4e-75 287.0 229 64.2
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 1.8e-75 286.6 235 61.7
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 4.0e-75 285.4 235 63.0
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 6.8e-75 284.6 233 60.9
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 6.8e-75 284.6 231 62.3
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 8.8e-75 284.3 231 62.8
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.0e-74 283.1 230 63.9
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 2.0e-74 283.1 230 63.0
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 2.6e-74 282.7 230 63.0
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 2.6e-74 282.7 271 57.9
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 3.4e-74 282.3 226 63.3
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 4.4e-74 282.0 230 62.2
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 5.7e-74 281.6 229 63.8
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 9.8e-74 280.8 230 62.2
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.2e-73 279.6 235 62.1
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 2.2e-73 279.6 230 62.2
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 2.8e-73 279.3 226 61.9
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 3.7e-73 278.9 227 62.6
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 4.8e-73 278.5 229 62.4
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 6.3e-73 278.1 230 62.6
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 6.3e-73 278.1 231 62.8
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 8.3e-73 277.7 221 68.3
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 2.4e-72 276.2 231 61.5
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.4e-72 276.2 231 61.5
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 2.4e-72 276.2 237 60.8
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.1e-72 275.4 316 49.7
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 9.1e-72 274.2 237 61.2
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 3.5e-71 272.3 227 61.2
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 7.7e-71 271.2 231 60.6
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 8.6e-70 267.7 231 61.0
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 1.5e-69 266.9 231 59.7
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.5e-69 266.9 231 60.2
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 3.3e-69 265.8 231 59.7
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 4.2e-69 265.4 231 59.3
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 4.2e-69 265.4 231 59.3
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 5.5e-69 265.0 231 59.3
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 5.5e-69 265.0 230 60.4
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.6e-68 263.5 231 59.3
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 2.1e-68 263.1 227 59.9
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 4.7e-68 261.9 212 62.3
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.8e-67 260.0 231 58.4
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 8.9e-67 257.7 230 59.1
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 1.2e-66 257.3 229 59.4
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 6.3e-65 251.5 172 70.9
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 6.3e-65 251.5 197 65.5
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.4e-64 250.4 171 71.9
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 3.1e-64 249.2 223 58.3
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.1e-64 248.8 223 57.0
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 2.7e-63 246.1 229 54.6
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 4.5e-63 245.4 204 62.3
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 7.8e-63 244.6 224 58.5
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 5.6e-61 238.4 231 55.0
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 4.0e-59 232.3 151 80.8
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 5.2e-59 231.9 230 53.9
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 3.4e-58 229.2 171 65.5
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.4e-57 224.9 146 78.8
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.2e-52 210.7 240 50.8
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 1.9e-48 196.8 231 45.0
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 2.4e-48 196.4 237 45.6
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 4.1e-48 195.7 136 73.5
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.4e-48 195.3 127 81.1
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 6.0e-47 191.8 223 45.7
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 1.9e-45 186.8 194 53.6
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 4.3e-45 185.7 217 50.2
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 2.1e-44 183.3 222 45.9
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 8.1e-44 181.4 141 63.8
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 6.8e-43 178.3 135 65.9
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 6.4e-41 171.8 143 62.9
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-39 167.2 115 72.2
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 4.6e-39 165.6 142 57.0
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 1.0e-38 164.5 146 61.6
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 3.3e-37 159.5 138 56.5
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 4.4e-34 149.1 88 80.7
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 1.7e-30 137.1 129 60.5
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 2.3e-30 136.7 113 60.2
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 5.1e-30 135.6 148 50.0
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 6.2e-28 128.6 130 50.8
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 8.1e-28 128.3 92 72.8
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 4.4e-26 122.5 183 38.3
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.7e-25 120.6 188 37.8
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 2.9e-25 119.8 96 59.4
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 1.9e-24 117.1 90 65.6
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 3.9e-22 109.4 112 54.5
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 5.1e-22 109.0 105 55.2
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 1.5e-21 107.5 68 75.0
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 2.5e-21 106.7 100 59.0
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 3.3e-21 106.3 103 50.5
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 5.6e-21 105.5 193 37.3
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.6e-20 104.0 88 62.5
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 1.4e-19 100.9 106 52.8
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-18 97.4 61 78.7
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 4.5e-18 95.9 81 65.4
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.2e-17 93.6 87 56.3
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 8.4e-17 91.7 84 60.7
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 1.9e-16 90.5 87 57.5
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 5.4e-16 89.0 151 38.4
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 2.1e-15 87.0 51 84.3
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.7e-15 86.7 87 58.6
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 3.5e-15 86.3 98 51.0
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 4.6e-15 85.9 72 58.3
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 2.3e-14 83.6 79 57.0
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 6.7e-14 82.0 59 66.1
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 7.4e-13 78.6 70 58.6
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 8.1e-12 75.1 87 50.6
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 3.4e-10 69.7 69 50.7
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 3.4e-10 69.7 183 31.1
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 4.9e-09 65.9 186 29.0


User provided reference genes

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