Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 1.8e-61 239.6 167 100.0
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.3e-43 180.3 167 69.5
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 2.8e-43 179.1 167 73.1
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 4.5e-33 145.2 170 63.5
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 6.1e-30 134.8 176 70.5
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 9.4e-23 110.9 172 55.8
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 8.0e-22 107.8 74 81.1
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 1.4e-21 107.1 177 57.6
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 5.2e-21 105.1 74 77.0
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 1.1e-20 104.0 126 51.6
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 1.1e-20 104.0 74 77.0
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 1.1e-20 104.0 66 83.3
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 1.5e-20 103.6 150 45.3
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 2.0e-20 103.2 74 75.7
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 7.4e-20 101.3 66 81.8
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 9.7e-20 100.9 74 74.3
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 9.7e-20 100.9 66 83.3
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 1.7e-19 100.1 171 52.6
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 2.2e-19 99.8 149 49.0
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 2.2e-19 99.8 148 46.6
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 2.2e-19 99.8 148 46.6
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 2.2e-19 99.8 66 87.9
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 2.8e-19 99.4 153 49.0
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 3.7e-19 99.0 74 73.0
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 4.8e-19 98.6 167 46.1
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 6.3e-19 98.2 74 77.0
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 6.3e-19 98.2 74 73.0
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 1.1e-18 97.4 74 78.4
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 1.1e-18 97.4 66 78.8
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 1.1e-18 97.4 66 78.8
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 1.4e-18 97.1 66 75.8
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.4e-18 97.1 66 86.4
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.8e-18 96.7 66 84.8
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 2.4e-18 96.3 74 64.9
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 2.4e-18 96.3 74 75.7
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 3.1e-18 95.9 74 73.0
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 3.1e-18 95.9 73 78.1
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 4.1e-18 95.5 74 71.6
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 7.0e-18 94.7 74 63.5
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 9.1e-18 94.4 65 84.6
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 9.1e-18 94.4 73 75.3
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 9.1e-18 94.4 131 50.4
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 9.1e-18 94.4 66 72.7
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 1.2e-17 94.0 74 79.7
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 1.6e-17 93.6 66 80.3
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 1.6e-17 93.6 66 74.2
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 2.0e-17 93.2 148 54.7
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 2.6e-17 92.8 132 51.5
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 2.6e-17 92.8 66 80.3
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 2.6e-17 92.8 66 80.3
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 5.9e-17 91.7 74 70.3
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 5.9e-17 91.7 65 70.8
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 5.9e-17 91.7 70 75.7
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 7.7e-17 91.3 66 75.8
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 7.7e-17 91.3 74 73.0
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 1.0e-16 90.9 73 74.0
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 1.3e-16 90.5 74 73.0
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 1.7e-16 90.1 68 76.5
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 2.2e-16 89.7 65 75.4
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 2.9e-16 89.4 74 70.3
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 8.5e-16 87.8 65 73.8
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 1.1e-15 87.4 74 68.9
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 1.9e-15 86.7 130 46.2
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 2.5e-15 86.3 74 67.6
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 4.2e-15 85.5 74 71.6
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 4.2e-15 85.5 74 67.6
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 5.5e-15 85.1 59 81.4
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 5.5e-15 85.1 107 49.5
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 1.2e-14 84.0 58 72.4
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 2.1e-14 83.2 74 67.6
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 3.6e-14 82.4 59 76.3
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 4.7e-14 82.0 66 66.7
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 6.1e-14 81.6 74 67.6
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 6.1e-14 81.6 74 67.6
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 1.4e-13 80.5 74 67.6
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 4.0e-13 79.0 74 66.2
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 6.7e-13 78.2 49 75.5
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 2.6e-12 76.3 66 71.2
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 2.6e-12 76.3 66 71.2
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 2.6e-12 76.3 66 71.2
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 2.6e-12 76.3 66 60.6
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 3.3e-12 75.9 66 71.2
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 5.7e-12 75.1 51 68.6
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 2.2e-11 73.2 70 62.9
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 1.4e-10 70.5 70 61.4
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 2.4e-10 69.7 67 64.2
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 3.1e-10 69.3 56 64.3
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 1.3e-08 63.9 67 59.7
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 6.5e-08 61.6 67 61.2
SGA_v2.0_scaffold10G05320 Striga asiatica HOM05D007680 ORTHO05D009702 1.2e-06 57.4 31 77.4
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.2e-06 57.4 31 77.4


User provided reference genes

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