Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 0.0e+00 1272.7 812 100.0
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 2.4e-297 1025.4 814 84.3
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 5.9e-296 1020.8 814 83.3
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 4.7e-293 1011.1 814 85.3
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 2.2e-210 736.5 817 62.1
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 2.9e-210 736.1 816 63.2
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 3.4e-203 712.6 816 64.6
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 1.3e-154 551.2 590 58.5
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 2.9e-141 506.9 621 53.1
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 1.4e-135 488.0 590 55.4
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 8.3e-133 478.8 588 53.7
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 1.9e-132 477.6 592 52.4
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 3.8e-125 453.4 661 47.0
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 8.4e-125 452.2 585 50.6
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 3.6e-120 436.8 585 50.6
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 3.6e-120 436.8 582 50.0
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 4.9e-117 426.4 583 49.6
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 4.9e-117 426.4 576 51.7
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 7.1e-116 422.5 604 49.2
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 1.2e-115 421.8 598 48.7
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 5.1e-114 416.4 586 48.8
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 2.0e-110 404.4 592 47.1
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 5.8e-110 402.9 634 45.0
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.2e-107 395.2 637 44.4
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 2.1e-107 394.4 634 44.6
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 2.1e-107 394.4 590 47.3
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 2.3e-106 391.0 591 47.0
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 3.0e-106 390.6 602 45.5
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 3.9e-106 390.2 913 36.8
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 3.1e-103 380.6 590 46.6
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.2e-102 378.6 606 45.7
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 4.5e-102 376.7 585 46.0
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 9.9e-102 375.6 618 44.0
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 2.2e-101 374.4 599 46.2
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 6.4e-101 372.9 707 41.6
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 7.9e-99 365.9 575 47.0
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 1.8e-98 364.8 581 46.6
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 1.8e-98 364.8 580 45.5
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.3e-98 364.4 572 46.2
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 5.1e-98 363.2 564 45.7
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 9.6e-97 359.0 552 49.8
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.6e-96 358.2 598 44.0
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 4.9e-93 346.7 601 43.3
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.2e-91 342.0 600 43.5
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 7.9e-91 339.3 580 45.3
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 6.7e-90 336.3 596 44.0
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 1.9e-89 334.7 581 43.5
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.3e-89 334.0 640 41.4
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 2.1e-88 331.3 600 42.5
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 1.9e-84 318.2 594 42.6
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.5e-84 317.8 666 40.7
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 7.2e-84 316.2 479 47.8
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 1.0e-82 312.4 541 42.9
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 5.1e-82 310.1 519 44.3
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.7e-80 305.1 635 38.6
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 6.3e-80 303.1 590 42.5
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 5.3e-79 300.1 580 42.6
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 6.9e-79 299.7 546 44.1
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 7.7e-78 296.2 592 40.7
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 2.5e-76 291.2 300 64.0
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.5e-76 291.2 566 42.4
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 4.2e-76 290.4 578 41.5
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 5.5e-76 290.0 578 41.7
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.0e-73 281.6 580 41.4
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 2.8e-72 277.7 529 44.0
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 4.8e-72 276.9 605 38.3
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.1e-71 274.2 561 41.0
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 1.3e-69 268.9 578 41.2
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 5.0e-69 266.9 588 37.9
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 7.2e-68 263.1 574 40.6
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.6e-67 261.9 584 40.9
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 3.6e-67 260.8 336 47.9
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 1.1e-65 255.8 581 39.8
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 7.4e-65 253.1 566 40.3
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.8e-64 250.4 562 39.5
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 1.2e-62 245.7 567 39.5
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.2e-62 245.7 577 39.0
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.6e-62 245.4 591 36.2
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 1.5e-60 238.8 576 37.5
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 3.2e-60 237.7 573 38.6
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 4.2e-60 237.3 536 38.1
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 7.2e-60 236.5 574 36.9
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 1.8e-58 231.9 477 41.5
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 2.4e-55 221.5 580 37.2
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 4.1e-55 220.7 597 34.7
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 1.2e-54 219.2 531 37.7
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 2.0e-54 218.4 604 34.4
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 2.7e-54 218.0 635 35.0
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 5.9e-54 216.9 614 34.4
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 8.5e-53 213.0 588 34.0
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 1.5e-52 212.2 527 36.4
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 3.2e-52 211.1 630 33.5
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 3.2e-52 211.1 601 33.9
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 4.2e-52 210.7 613 33.4
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 9.4e-52 209.5 529 36.7
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 1.6e-51 208.8 595 33.6
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 1.6e-51 208.8 595 33.6
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 6.1e-51 206.8 630 33.8
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 8.0e-51 206.5 608 33.1
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 1.0e-50 206.1 547 36.2
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 8.8e-50 203.0 527 37.0
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 2.0e-49 201.8 497 38.2
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 3.4e-49 201.1 611 33.4
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 4.4e-49 200.7 603 33.0
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 2.2e-48 198.4 295 46.1
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 5.4e-47 193.7 593 32.5
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 9.1e-47 193.0 576 33.2
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 9.1e-47 193.0 601 32.6
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 1.6e-46 192.2 601 32.6
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 1.3e-45 189.1 521 37.0
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 3.4e-41 174.5 600 31.7
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 2.3e-37 161.8 579 32.8
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 3.0e-34 151.4 563 33.4
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 1.3e-32 146.0 370 37.6
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 4.9e-32 144.1 345 40.3
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.4e-31 142.5 370 37.3
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.7e-29 135.6 629 28.8
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 5.8e-25 120.6 631 27.6
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 1.9e-23 115.5 295 38.3
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 2.3e-21 108.6 574 27.9
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 6.6e-21 107.1 665 28.3
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 8.6e-21 106.7 237 40.9
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 2.5e-20 105.1 610 26.1
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.4e-15 88.6 162 39.5
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 8.6e-13 80.1 377 29.4
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 6.2e-11 73.9 294 27.2


User provided reference genes

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