Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0333101 Rosa chinensis HOM05D004809 ORTHO05D006732 1.2e-77 293.1 145 100.0
RcHm_v2.0_Chr1g0333991 Rosa chinensis HOM05D004809 ORTHO05D006732 4.1e-75 284.6 143 97.9
FAN04G1536 Fragaria x ananassa HOM05D004809 ORTHO05D006732 7.8e-66 253.8 141 89.4
FAN08G1717 Fragaria x ananassa HOM05D004809 ORTHO05D006732 1.0e-65 253.4 141 89.4
FvH4_5g38020 Fragaria vesca HOM05D004809 ORTHO05D006732 6.6e-65 250.8 141 87.9
FAN18G3489 Fragaria x ananassa HOM05D004809 ORTHO05D006732 6.6e-65 250.8 141 87.9
MD02G1248400 Malus domestica HOM05D004809 ORTHO05D006732 2.4e-54 215.7 141 75.2
Prupe.2G084800 Prunus persica HOM05D004809 ORTHO05D006732 3.1e-54 215.3 141 76.6
MD07G1067800 Malus domestica HOM05D004809 ORTHO05D006732 2.6e-53 212.2 141 74.5
Dinv20809 Davidia involucrata HOM05D004809 ORTHO05D006732 2.4e-43 179.1 144 63.2
Manes.07G089701 Manihot esculenta HOM05D004809 ORTHO05D006732 4.2e-43 178.3 142 64.1
CiPaw.13G037200 Carya illinoinensis HOM05D004809 ORTHO05D006732 1.2e-42 176.8 140 64.3
Duzib106G1880 Durio zibethinus HOM05D004809 ORTHO05D006732 1.3e-41 173.3 146 60.3
CANSAT56G2003 Cannabis sativa HOM05D004809 ORTHO05D006732 1.7e-41 172.9 143 63.6
Haze_02592 Corylus avellana HOM05D004809 ORTHO05D006732 8.7e-41 170.6 140 61.4
GSVIVG01034738001 Vitis vinifera HOM05D004809 ORTHO05D006732 1.1e-40 170.2 148 62.8
Thecc.10G104900 Theobroma cacao HOM05D004809 ORTHO05D006732 3.3e-40 168.7 144 57.6
QL04p042558 Quercus lobata HOM05D004809 ORTHO05D006732 4.8e-39 164.9 142 61.3
Sabra08G0016600 Salix brachista HOM05D004809 ORTHO05D006732 4.8e-39 164.9 143 58.7
QL04p042573 Quercus lobata HOM05D004809 ORTHO05D006732 1.4e-38 163.3 142 60.6
CSS0050047 Camellia sinensis var. sinensis HOM05D004809 ORTHO05D006732 5.3e-38 161.4 144 59.7
Atru.chr12.976 Acer truncatum HOM05D004809 ORTHO05D006732 6.9e-38 161.0 144 57.6
Gorai.008G098400 Gossypium raimondii HOM05D004809 ORTHO05D006732 1.2e-37 160.2 144 56.9
Potri.008G024700 Populus trichocarpa HOM05D004809 ORTHO05D006732 2.0e-37 159.5 142 57.7
Sed0005221 Sechium edule HOM05D004809 ORTHO05D006732 2.6e-37 159.1 139 57.6
Gohir.D12G091000 Gossypium hirsutum HOM05D004809 ORTHO05D006732 1.3e-36 156.8 144 55.6
Hma1.2p1_0352F.1_g133000 Hydrangea macrophylla HOM05D004809 ORTHO05D006732 2.2e-36 156.0 144 59.7
Hma1.2p1_0352F.1_g133010 Hydrangea macrophylla HOM05D004809 ORTHO05D006732 2.2e-36 156.0 144 59.7
TAR636G3234 Trochodendron aralioides HOM05D004809 ORTHO05D006732 2.2e-36 156.0 143 54.5
Rhsim03G0105000 Rhododendron simsii HOM05D004809 ORTHO05D006732 4.9e-36 154.8 144 58.3
Nitab4.5_0000962g0070 Nicotiana tabacum HOM05D004809 ORTHO05D006732 4.2e-35 151.8 142 58.5
Eucgr.G02708 Eucalyptus grandis HOM05D004809 ORTHO05D006732 5.4e-35 151.4 143 55.2
Lj2A29T80 Lonicera japonica HOM05D004809 ORTHO05D006732 7.1e-35 151.0 146 54.8
FAN08G1494 Fragaria x ananassa HOM05D004809 ORTHO05D006732 2.1e-34 149.4 104 76.9
Cpa.g.sc19.17 Carica papaya HOM05D004809 ORTHO05D006732 3.5e-34 148.7 141 56.0
Solyc11g007320.2 Solanum lycopersicum HOM05D004809 ORTHO05D006732 3.5e-34 148.7 142 56.3
Sopen11g003210 Solanum pennellii HOM05D004809 ORTHO05D006732 3.5e-34 148.7 142 56.3
Lalb_Chr02g0151411 Lupinus albus HOM05D004809 ORTHO05D006732 4.6e-34 148.3 141 53.9
Nitab4.5_0005390g0010 Nicotiana tabacum HOM05D004809 ORTHO05D006732 4.6e-34 148.3 142 56.3
Actinidia18582 Actinidia chinensis HOM05D004809 ORTHO05D006732 6.0e-34 147.9 145 56.6
Nn6g35016 Nelumbo nucifera HOM05D004809 ORTHO05D006732 7.9e-34 147.5 144 54.2
Oeu015034.1 Olea europaea HOM05D004809 ORTHO05D006732 3.0e-33 145.6 141 56.0
TPR.G2503 Trifolium pratense HOM05D004809 ORTHO05D006732 5.1e-33 144.8 141 53.2
arahy.Tifrunner.gnm1.ann1.RW77QZ Arachis hypogaea HOM05D004809 ORTHO05D006732 8.7e-33 144.1 141 53.2
arahy.Tifrunner.gnm1.ann1.9JEX28 Arachis hypogaea HOM05D004809 ORTHO05D006732 9.6e-32 140.6 143 51.7
Ca_10498_v3 Cicer arietinum L. HOM05D004809 ORTHO05D006732 1.3e-31 140.2 141 51.1
Peaxi162Scf00244g01123 Petunia axillaris HOM05D004809 ORTHO05D006732 1.3e-31 140.2 141 53.2
ClCG05G021650 Citrullus lanatus HOM05D004809 ORTHO05D006732 2.1e-31 139.4 140 50.0
Glyma.20G187700 Glycine max HOM05D004809 ORTHO05D006732 2.1e-31 139.4 141 53.2
Medtr1g492850 Medicago truncatula HOM05D004809 ORTHO05D006732 2.8e-31 139.0 141 52.5
Lj5g0024267 Lotus japonicus HOM05D004809 ORTHO05D006732 4.8e-31 138.3 143 49.7
Lsat_1_v5_gn_0_7340 Lactuca sativa HOM05D004809 ORTHO05D006732 5.3e-30 134.8 141 51.1
Cc02_g09980 Coffea canephora HOM05D004809 ORTHO05D006732 9.0e-30 134.0 141 51.8
Sc06g0002220 Simmondsia chinensis HOM05D004809 ORTHO05D006732 1.2e-29 133.7 142 50.7
VMungo0720G0319 Vigna mungo HOM05D004809 ORTHO05D006732 1.5e-29 133.3 143 51.7
ECA232G3125 Erigeron canadensis HOM05D004809 ORTHO05D006732 2.0e-29 132.9 141 51.8
DCAR_028402 Daucus carota HOM05D004809 ORTHO05D006732 4.5e-29 131.7 145 49.7
Migut.F00896 Erythranthe guttata HOM05D004809 ORTHO05D006732 4.5e-29 131.7 141 51.1
CAN.G534.16 Capsicum annuum HOM05D004809 ORTHO05D006732 5.8e-29 131.3 142 52.1
Phvul.007G104300 Phaseolus vulgaris HOM05D004809 ORTHO05D006732 7.6e-29 131.0 143 49.0
PGR142G2585 Punica granatum HOM05D004809 ORTHO05D006732 1.7e-28 129.8 146 50.7
SalBow6G1224 Salvia bowleyana HOM05D004809 ORTHO05D006732 2.9e-28 129.0 142 49.3
Os03g0835800 Oryza sativa ssp. japonica HOM05D004809 ORTHO05D006732 1.9e-27 126.3 141 51.8
CsaV3_5G035620 Cucumis sativus L. HOM05D004809 ORTHO05D006732 5.5e-27 124.8 129 49.6
RcHm_v2.0_Chr1g0333031 Rosa chinensis HOM05D004809 ORTHO05D006732 5.5e-27 124.8 72 84.7
MBI17_g00711_MAGBIO Magnolia biondii HOM05D004809 ORTHO05D006732 7.1e-27 124.4 143 49.7
Zm00001eb063700 Zea mays HOM05D004809 ORTHO05D006732 5.1e-25 118.2 143 46.2
BcaC02g11751 Brassica carinata HOM05D004809 ORTHO05D006732 8.7e-25 117.5 145 46.2
BolC4t22822H Brassica oleracea HOM05D004809 ORTHO05D006732 8.7e-25 117.5 145 46.2
SGA_v2.0_scaffold62G21351 Striga asiatica HOM05D004809 ORTHO05D006732 1.1e-24 117.1 151 44.4
BcaB02g09358 Brassica carinata HOM05D004809 ORTHO05D006732 1.9e-24 116.3 145 45.5
HPP92_026096 Vanilla planifolia HOM05D004809 ORTHO05D006732 3.3e-24 115.5 145 42.1
ATR0820G085 Amborella trichopoda HOM05D004809 ORTHO05D006732 5.6e-24 114.8 146 45.9
Hund06767 Selenicereus undatus HOM05D004809 ORTHO05D006732 1.6e-23 113.2 116 50.9
HanXRQChr05g0146831 Helianthus annuus HOM05D004809 ORTHO05D006732 3.7e-23 112.1 125 50.4
CARHR130660 Cardamine hirsuta HOM05D004809 ORTHO05D006732 6.2e-23 111.3 146 47.3
A05p09490 Brassica napus HOM05D004809 ORTHO05D006732 8.2e-23 110.9 141 45.4
BraA05t19899Z Brassica rapa HOM05D004809 ORTHO05D006732 8.2e-23 110.9 141 45.4
COL.COLO4_20964 Corchorus olitorius HOM05D004809 ORTHO05D006732 6.9e-22 107.8 98 55.1
Thhalv10017936m.g Eutrema salsugineum HOM05D004809 ORTHO05D006732 6.9e-22 107.8 141 44.7
Carub.0004s1815 Capsella rubella HOM05D004809 ORTHO05D006732 1.2e-21 107.1 145 44.1
Sp4g18640 Schrenkiella parvula HOM05D004809 ORTHO05D006732 1.3e-20 103.6 145 44.1
AT2G36360 Arabidopsis thaliana HOM05D004809 ORTHO05D006732 4.9e-20 101.7 138 43.5
Ah.04g163730 Amaranthus hybridus HOM05D004809 ORTHO05D006732 6.5e-20 101.3 145 40.7
C04p11750 Brassica napus HOM05D004809 ORTHO05D006732 1.1e-19 100.5 166 38.6
Ciclev10031499m.g Citrus clementina HOM05D004809 ORTHO05D006732 1.9e-19 99.8 95 56.8
EL10Ac4g08666 Beta vulgaris HOM05D004809 ORTHO05D006732 2.5e-19 99.4 132 41.7
vmacro07229 Vaccinium macrocarpon HOM05D004809 ORTHO05D006732 3.2e-19 99.0 97 56.7
CSS0021630 Camellia sinensis var. sinensis HOM05D004809 ORTHO05D006732 1.0e-17 94.0 88 61.4
Duzib114G0297 Durio zibethinus HOM05D004809 ORTHO05D006732 1.8e-17 93.2 94 52.1
FvH4_7g05461 Fragaria vesca HOM05D004809 ORTHO05D035441 3.0e-17 92.4 46 91.3
FAN21G2933 Fragaria x ananassa HOM05D004809 ORTHO05D035441 3.0e-17 92.4 46 91.3
PGSC0003DMG400019479 Solanum tuberosum HOM05D004809 ORTHO05D006732 5.1e-17 91.7 93 53.8
unitig_0.g851 Utricularia gibba HOM05D004809 ORTHO05D006732 4.3e-16 88.6 142 41.5
Pp3c12_16110 Physcomitrium patens HOM05D004809 ORTHO05D006732 1.3e-15 87.0 147 36.7
Pp3c12_16113 Physcomitrium patens HOM05D004809 ORTHO05D006732 1.3e-15 87.0 147 36.7
Aqoxy4G02860 Aquilegia oxysepala HOM05D004809 ORTHO05D006732 4.8e-15 85.1 120 42.5
AUR62041546 Chenopodium quinoa HOM05D004809 ORTHO05D006732 6.3e-15 84.7 133 41.4
Mapoly0052s0089 Marchantia polymorpha HOM05D004809 ORTHO05D006732 3.1e-14 82.4 145 38.6
SMO174G0255 Selaginella moellendorffii HOM05D004809 ORTHO05D006732 7.2e-11 71.2 141 36.9
Aa31LG5G21540 Aethionema arabicum HOM05D004809 ORTHO05D006732 6.1e-10 68.2 99 44.4
AL4G32520 Arabidopsis lyrata HOM05D004809 ORTHO05D006732 3.9e-09 65.5 92 44.6
Lsat_1_v5_gn_3_126940 Lactuca sativa HOM05D004809 ORTHO05D006732 1.1e-08 63.9 79 44.3
SHI21283 Sapria himalayana HOM05D004809 ORTHO05D006732 1.5e-08 63.5 91 45.1


User provided reference genes

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