Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 7.5e-101 370.5 191 100.0
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 6.0e-98 360.9 191 97.9
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.5e-96 356.3 191 95.3
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 3.3e-96 355.1 191 94.8
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.2e-92 342.4 192 92.7
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 1.0e-89 333.6 191 90.6
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 3.9e-89 331.6 191 90.6
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 2.6e-85 318.9 189 88.4
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 9.9e-85 317.0 189 86.2
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 5.1e-81 304.7 191 82.2
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.1e-80 303.5 191 82.2
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 1.9e-80 302.8 191 81.7
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 2.8e-79 298.9 189 81.0
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.8e-79 298.9 191 80.6
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 6.2e-79 297.7 180 84.4
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 3.1e-78 295.4 189 79.4
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 4.0e-78 295.0 192 79.7
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 5.2e-78 294.7 195 79.0
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 6.9e-78 294.3 192 80.7
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 6.9e-78 294.3 189 79.4
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 8.9e-78 293.9 191 79.1
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.6e-77 292.4 191 78.5
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 4.4e-77 291.6 191 79.6
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 4.4e-77 291.6 191 79.6
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 4.4e-77 291.6 189 80.4
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 5.8e-77 291.2 175 84.6
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 7.6e-77 290.8 192 79.7
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 9.9e-77 290.4 193 81.3
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 1.7e-76 289.7 185 80.0
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.2e-76 289.3 185 80.5
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 4.9e-76 288.1 186 80.6
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 8.4e-76 287.3 191 77.0
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 1.1e-75 287.0 187 78.1
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.4e-75 286.6 182 81.9
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.9e-75 286.2 190 78.9
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.4e-75 285.8 182 80.2
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 5.4e-75 284.6 183 80.9
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.6e-74 283.1 189 78.8
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 4.6e-74 281.6 191 75.9
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 6.0e-74 281.2 189 75.7
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 7.8e-74 280.8 189 77.8
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.1e-72 276.9 193 75.6
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.3e-72 275.4 193 75.6
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 4.3e-72 275.0 191 74.3
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 9.6e-72 273.9 191 73.3
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 9.6e-72 273.9 193 75.1
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.3e-71 273.5 185 77.8
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.8e-71 272.3 176 80.1
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 3.6e-71 271.9 191 75.4
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 4.8e-71 271.6 158 86.1
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 6.2e-71 271.2 202 71.8
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 8.1e-71 270.8 191 74.9
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.1e-70 270.4 176 78.4
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.8e-70 269.6 190 74.2
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 2.4e-70 269.2 207 69.1
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 3.1e-70 268.9 199 69.8
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 3.1e-70 268.9 199 69.8
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 4.0e-70 268.5 194 71.6
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 4.0e-70 268.5 201 70.6
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 4.0e-70 268.5 201 70.6
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 9.0e-70 267.3 192 72.4
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.2e-69 266.9 201 70.1
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.2e-69 266.9 189 74.6
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 2.0e-69 266.2 155 85.2
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 2.6e-69 265.8 165 81.2
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 3.4e-69 265.4 190 72.6
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 7.6e-69 264.2 165 81.8
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 7.6e-69 264.2 190 75.3
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.6e-69 264.2 202 70.8
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 9.9e-69 263.8 189 73.5
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 1.3e-68 263.5 159 81.1
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 4.9e-68 261.5 196 69.9
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.1e-67 260.4 190 72.1
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 1.9e-67 259.6 173 77.5
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 2.4e-67 259.2 192 71.4
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 3.2e-67 258.8 197 71.1
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 4.2e-67 258.5 192 70.8
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 4.2e-67 258.5 191 70.7
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 4.2e-67 258.5 184 71.2
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 7.1e-67 257.7 192 70.8
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 7.1e-67 257.7 193 72.5
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 1.2e-66 256.9 175 74.3
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.6e-66 256.5 191 69.1
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 2.7e-66 255.8 179 71.5
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 3.5e-66 255.4 189 72.0
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 3.5e-66 255.4 194 71.1
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 3.5e-66 255.4 201 67.7
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 4.6e-66 255.0 195 68.7
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 4.6e-66 255.0 171 77.2
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 7.9e-66 254.2 189 71.4
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 3.0e-65 252.3 192 69.8
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 3.9e-65 251.9 190 71.1
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 5.1e-65 251.5 182 69.2
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 6.7e-65 251.1 162 78.4
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 8.7e-65 250.8 189 69.3
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 1.9e-64 249.6 176 72.7
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 2.5e-64 249.2 192 68.8
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 2.5e-64 249.2 190 68.4
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 5.6e-64 248.1 189 68.8
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 7.4e-64 247.7 194 67.0
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 1.6e-63 246.5 190 66.3
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 3.6e-63 245.4 210 64.8
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 4.8e-63 245.0 161 77.0
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 6.2e-63 244.6 191 69.1
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 6.2e-63 244.6 185 70.3
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.8e-62 243.0 187 70.1
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 2.4e-62 242.7 153 80.4
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 2.4e-62 242.7 176 73.3
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 4.0e-62 241.9 192 69.8
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 4.0e-62 241.9 149 83.9
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 6.9e-62 241.1 192 69.8
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 6.9e-62 241.1 195 68.2
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 1.2e-61 240.4 199 65.8
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 9.9e-61 237.3 158 74.1
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 2.9e-60 235.7 190 67.9
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 4.9e-60 235.0 195 65.1
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 4.9e-60 235.0 156 75.6
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 7.1e-59 231.1 168 72.0
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 6.0e-58 228.0 168 71.4
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 6.0e-58 228.0 258 52.7
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 1.8e-57 226.5 167 70.7
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 2.3e-57 226.1 168 72.0
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 3.9e-57 225.3 163 69.9
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 6.7e-57 224.6 198 60.6
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 7.4e-56 221.1 181 66.9
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 4.8e-55 218.4 164 73.2
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 6.9e-54 214.5 194 61.3
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 2.9e-52 209.1 191 61.8
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 6.5e-52 208.0 191 61.3
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.9e-49 198.7 131 78.6
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 9.6e-48 194.1 168 63.1
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 3.1e-46 189.1 150 66.7
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 1.2e-45 187.2 208 54.8
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 1.2e-45 187.2 147 65.3
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 8.5e-44 181.0 111 78.4
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 3.2e-43 179.1 184 56.5
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.9e-42 174.5 179 57.0
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 1.0e-41 174.1 131 67.9
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 9.7e-40 167.5 104 77.9
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 4.1e-38 162.2 190 52.1
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 4.5e-37 158.7 167 48.5
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.9e-36 156.0 130 60.8
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 1.4e-35 153.7 144 50.0
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.4e-35 153.7 131 63.4
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.2e-35 152.1 131 61.8
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.5e-35 151.8 131 61.8
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 6.1e-34 148.3 154 50.0
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.4e-33 147.1 131 61.8
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 2.0e-32 143.3 82 82.9
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 2.6e-32 142.9 91 71.4
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 4.4e-32 142.1 167 45.5
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 7.4e-32 141.4 163 45.4
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 4.8e-31 138.7 120 60.8
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 1.1e-30 137.5 134 54.5
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.0e-25 120.9 119 59.7
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 2.1e-18 96.7 87 60.9
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 1.8e-17 93.6 59 78.0
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.9e-11 73.6 79 59.5
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 2.7e-10 69.7 176 35.8
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.0e-09 67.8 103 45.6
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 1.1e-06 57.8 43 60.5
RcHm_v2.0_Chr2g0098501 Rosa chinensis HOM05D004525 ORTHO05D005295 3.1e-06 56.2 87 41.4


User provided reference genes

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