Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 4.3e-43 177.6 87 100.0
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 1.4e-25 119.4 60 98.3
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.9e-25 116.7 63 90.5
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 3.7e-23 111.3 60 91.7
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.7e-23 111.3 60 91.7
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.7e-23 111.3 60 91.7
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.7e-23 111.3 60 91.7
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 2.4e-22 108.6 60 88.3
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.1e-22 107.8 60 90.0
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 1.2e-21 106.3 60 86.7
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.6e-21 104.4 95 63.2
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.0e-20 103.2 56 91.1
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.5e-19 99.4 65 78.5
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.2e-18 96.3 68 73.5
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 2.1e-18 95.5 59 78.0
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 2.8e-18 95.1 60 76.7
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 3.6e-18 94.7 63 74.6
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 6.2e-18 94.0 65 72.3
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 8.1e-18 93.6 59 81.4
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 1.1e-17 93.2 60 76.7
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.4e-17 92.8 59 81.4
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 1.4e-17 92.8 59 78.0
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 1.8e-17 92.4 60 75.0
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 3.1e-17 91.7 68 70.6
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 4.0e-17 91.3 59 76.3
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 6.8e-17 90.5 64 73.4
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 6.8e-17 90.5 63 73.0
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 6.8e-17 90.5 59 78.0
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 8.9e-17 90.1 66 71.2
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 8.9e-17 90.1 60 73.3
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 1.2e-16 89.7 59 74.6
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 1.2e-16 89.7 60 71.7
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-16 89.7 60 71.7
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.5e-16 89.4 59 76.3
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.5e-16 89.4 59 76.3
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 1.5e-16 89.4 59 78.0
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 2.0e-16 89.0 60 71.7
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 2.6e-16 88.6 59 74.6
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 7.6e-16 87.0 58 74.1
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 7.6e-16 87.0 59 71.2
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 9.9e-16 86.7 60 70.0
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 9.9e-16 86.7 60 70.0
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 9.9e-16 86.7 60 73.3
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 1.3e-15 86.3 59 76.3
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 1.3e-15 86.3 59 76.3
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 1.3e-15 86.3 59 72.9
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 1.7e-15 85.9 59 74.6
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.7e-15 85.9 59 72.9
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 1.7e-15 85.9 59 71.2
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 2.9e-15 85.1 59 74.6
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 2.9e-15 85.1 59 74.6
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 3.8e-15 84.7 60 70.0
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 4.9e-15 84.3 59 72.9
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 4.9e-15 84.3 64 71.9
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 8.4e-15 83.6 60 66.7
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 1.1e-14 83.2 60 68.3
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 1.1e-14 83.2 60 71.7
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 1.4e-14 82.8 59 67.8
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.4e-14 82.8 59 64.4
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 1.9e-14 82.4 60 68.3
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 1.9e-14 82.4 70 60.0
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 2.4e-14 82.0 60 68.3
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 2.4e-14 82.0 59 71.2
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 2.4e-14 82.0 65 63.1
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 3.2e-14 81.6 60 75.0
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 3.2e-14 81.6 73 61.6
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 3.2e-14 81.6 59 67.8
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 4.2e-14 81.3 59 67.8
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 4.2e-14 81.3 59 67.8
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 5.4e-14 80.9 64 65.6
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 5.4e-14 80.9 60 68.3
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 5.4e-14 80.9 64 60.9
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 5.4e-14 80.9 59 66.1
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 7.1e-14 80.5 63 66.7
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 7.1e-14 80.5 59 67.8
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 7.1e-14 80.5 59 64.4
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 9.2e-14 80.1 59 66.1
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 9.2e-14 80.1 59 67.8
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 9.2e-14 80.1 60 63.3
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.2e-13 79.7 59 69.5
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 1.6e-13 79.3 59 62.7
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.1e-13 79.0 59 64.4
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.1e-13 79.0 59 64.4
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 2.1e-13 79.0 59 64.4
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 2.7e-13 78.6 64 64.1
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 2.7e-13 78.6 64 62.5
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 2.7e-13 78.6 64 59.4
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 2.7e-13 78.6 59 64.4
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 3.5e-13 78.2 59 64.4
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 6.0e-13 77.4 59 62.7
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 1.0e-12 76.6 59 64.4
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 1.3e-12 76.3 64 57.8
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 1.3e-12 76.3 64 59.4
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 1.7e-12 75.9 64 56.2
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 1.7e-12 75.9 60 66.7
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 3.0e-12 75.1 64 57.8
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 3.9e-12 74.7 65 53.8
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 3.9e-12 74.7 67 58.2
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 8.7e-12 73.6 67 58.2
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.5e-11 72.8 59 59.3
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 2.5e-11 72.0 62 56.5
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 1.3e-10 69.7 67 58.2
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 1.6e-10 69.3 65 58.5
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 2.8e-10 68.6 65 50.8
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 2.8e-10 68.6 64 53.1
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 6.2e-10 67.4 62 51.6
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 6.2e-10 67.4 64 56.2
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.4e-09 66.2 59 62.7
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.4e-09 66.2 73 49.3
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 1.8e-09 65.9 69 49.3
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 4.0e-09 64.7 72 48.6
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 9.0e-09 63.5 65 47.7
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 3.8e-07 58.2 59 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 1.4e-06 56.2 72 43.1
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 4.2e-06 54.7 60 43.3


User provided reference genes

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