Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 3.9e-63 244.6 121 100.0
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 2.7e-19 99.0 62 85.5
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 2.5e-17 92.4 62 75.8
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.5e-17 92.4 62 75.8
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.5e-17 92.4 62 75.8
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.5e-17 92.4 62 75.8
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.5e-17 92.4 62 75.8
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.5e-17 92.4 62 75.8
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.5e-17 92.4 62 75.8
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 3.6e-16 88.6 58 77.6
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 5.2e-15 84.7 65 63.1
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 8.9e-15 84.0 58 74.1
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.2e-14 83.6 61 68.9
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.2e-14 83.6 58 72.4
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 1.5e-14 83.2 62 69.4
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 1.5e-14 83.2 62 69.4
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.0e-14 82.8 58 70.7
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 2.0e-14 82.8 62 71.0
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 2.0e-14 82.8 58 72.4
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 2.6e-14 82.4 58 70.7
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 4.4e-14 81.6 58 69.0
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.4e-14 81.6 65 61.5
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 4.4e-14 81.6 62 67.7
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.3e-13 80.1 62 67.7
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.7e-13 79.7 62 66.1
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 1.7e-13 79.7 62 66.1
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 1.7e-13 79.7 62 64.5
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 2.2e-13 79.3 72 59.7
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 2.2e-13 79.3 58 69.0
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.9e-13 79.0 58 65.5
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 2.9e-13 79.0 60 63.3
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 3.7e-13 78.6 62 59.7
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 4.9e-13 78.2 64 60.9
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 6.4e-13 77.8 62 64.5
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.3e-13 77.4 69 63.8
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 1.1e-12 77.0 61 62.3
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 1.1e-12 77.0 58 67.2
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 1.1e-12 77.0 62 62.9
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 1.4e-12 76.6 62 61.3
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 1.4e-12 76.6 60 66.7
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 1.9e-12 76.3 56 69.6
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 1.9e-12 76.3 63 60.3
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 1.9e-12 76.3 58 65.5
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 2.4e-12 75.9 73 61.6
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 2.4e-12 75.9 62 61.3
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 4.1e-12 75.1 56 67.9
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 4.1e-12 75.1 61 60.7
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 4.1e-12 75.1 58 65.5
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 4.1e-12 75.1 61 60.7
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 5.4e-12 74.7 65 60.0
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 5.4e-12 74.7 65 60.0
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 9.2e-12 73.9 61 60.7
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 2.7e-11 72.4 63 58.7
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 2.7e-11 72.4 62 59.7
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 3.5e-11 72.0 62 58.1
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 3.5e-11 72.0 62 59.7
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 3.5e-11 72.0 60 58.3
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 7.8e-11 70.9 62 59.7
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 7.8e-11 70.9 62 59.7
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 7.8e-11 70.9 62 62.9
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 7.8e-11 70.9 62 62.9
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 1.0e-10 70.5 62 58.1
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 1.0e-10 70.5 56 64.3
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 1.0e-10 70.5 56 64.3
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 1.0e-10 70.5 56 64.3
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 1.0e-10 70.5 56 64.3
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 1.0e-10 70.5 56 64.3
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.0e-10 70.5 52 73.1
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 1.0e-10 70.5 62 62.9
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.3e-10 70.1 70 54.3
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.7e-10 69.7 69 53.6
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 2.3e-10 69.3 70 50.0
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 2.3e-10 69.3 62 56.5
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 2.3e-10 69.3 62 58.1
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 3.0e-10 68.9 56 60.7
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 3.0e-10 68.9 52 67.3
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 3.0e-10 68.9 65 53.8
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 3.9e-10 68.6 55 63.6
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 1.1e-09 67.0 56 62.5
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 1.5e-09 66.6 62 59.7
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 1.5e-09 66.6 73 53.4
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 1.5e-09 66.6 62 56.5
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 1.5e-09 66.6 58 58.6
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 1.5e-09 66.6 52 65.4
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 1.9e-09 66.2 73 53.4
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 2.5e-09 65.9 62 53.2
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 4.3e-09 65.1 61 54.1
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 7.3e-09 64.3 63 57.1
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.6e-08 63.2 89 43.8
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 6.2e-08 61.2 59 57.6
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.1e-07 60.5 54 55.6
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 5.2e-07 58.2 55 60.0
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 5.2e-07 58.2 62 54.8
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 8.9e-07 57.4 59 47.5
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 1.5e-06 56.6 70 44.3
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 9.9e-06 53.9 82 39.0
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 9.9e-06 53.9 57 50.9


User provided reference genes

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