Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0332191 Rosa chinensis HOM05D006565 ORTHO05D008717 1.7e-196 689.1 338 100.0
FvH4_7g05460 Fragaria vesca HOM05D006565 ORTHO05D008717 3.3e-160 568.5 341 83.9
Prupe.2G073700 Prunus persica HOM05D006565 ORTHO05D008717 2.0e-152 542.7 332 81.9
MD07G1062700 Malus domestica HOM05D006565 ORTHO05D008717 2.2e-151 539.3 339 79.1
CiPaw.14G036000 Carya illinoinensis HOM05D006565 ORTHO05D008717 3.6e-138 495.4 323 75.2
GSVIVG01034599001 Vitis vinifera HOM05D006565 ORTHO05D008717 2.4e-134 482.6 331 73.1
Ciclev10015763m.g Citrus clementina HOM05D006565 ORTHO05D008717 2.7e-133 479.2 323 72.1
Thecc.10G119100 Theobroma cacao HOM05D006565 ORTHO05D008717 2.7e-133 479.2 313 74.1
arahy.Tifrunner.gnm1.ann1.51BCJ8 Arachis hypogaea HOM05D006565 ORTHO05D008717 4.5e-133 478.4 310 74.8
Lj5g0019410 Lotus japonicus HOM05D006565 ORTHO05D008717 5.9e-133 478.0 345 71.0
QL04p048612 Quercus lobata HOM05D006565 ORTHO05D008717 7.7e-133 477.6 351 70.7
Atru.chr12.1084 Acer truncatum HOM05D006565 ORTHO05D008717 1.7e-132 476.5 329 71.7
arahy.Tifrunner.gnm1.ann1.V0HLME Arachis hypogaea HOM05D006565 ORTHO05D008717 1.7e-132 476.5 310 74.5
Duzib114G0050 Durio zibethinus HOM05D006565 ORTHO05D008717 1.7e-132 476.5 287 79.1
TAR636G0179 Trochodendron aralioides HOM05D006565 ORTHO05D008717 5.0e-132 474.9 330 72.4
Ca_10426_v3 Cicer arietinum L. HOM05D006565 ORTHO05D008717 1.9e-131 473.0 345 69.9
Glyma.20G195000 Glycine max HOM05D006565 ORTHO05D008717 1.9e-131 473.0 345 69.6
Actinidia34736 Actinidia chinensis HOM05D006565 ORTHO05D008717 2.5e-131 472.6 335 71.9
Lalb_Chr06g0169851 Lupinus albus HOM05D006565 ORTHO05D008717 2.5e-131 472.6 320 72.8
Gorai.009G302300 Gossypium raimondii HOM05D006565 ORTHO05D008717 9.5e-131 470.7 322 71.4
Gohir.D05G287300 Gossypium hirsutum HOM05D006565 ORTHO05D008717 2.7e-130 469.2 322 71.1
Gohir.A05G286300 Gossypium hirsutum HOM05D006565 ORTHO05D008717 4.7e-130 468.4 322 70.8
FAN01G3085 Fragaria x ananassa HOM05D006565 ORTHO05D008717 1.0e-129 467.2 330 75.2
Potri.010G243900 Populus trichocarpa HOM05D006565 ORTHO05D008717 1.4e-129 466.8 320 72.8
Manes.10G059200 Manihot esculenta HOM05D006565 ORTHO05D008717 2.3e-129 466.1 307 75.6
Nn2g14368 Nelumbo nucifera HOM05D006565 ORTHO05D008717 5.2e-129 464.9 331 70.7
FAN06G1903 Fragaria x ananassa HOM05D006565 ORTHO05D008717 8.8e-129 464.2 322 76.7
Aqoxy1G00616 Aquilegia oxysepala HOM05D006565 ORTHO05D008717 2.0e-128 463.0 327 69.1
TPR.G10259 Trifolium pratense HOM05D006565 ORTHO05D008717 9.8e-128 460.7 329 69.9
ClCG05G021990 Citrullus lanatus HOM05D006565 ORTHO05D008717 6.3e-127 458.0 344 69.2
MELO3C012330.2 Cucumis melo HOM05D006565 ORTHO05D008717 1.1e-126 457.2 316 72.5
Eucgr.G02667 Eucalyptus grandis HOM05D006565 ORTHO05D008717 1.1e-126 457.2 289 76.1
CANSAT56G1291 Cannabis sativa HOM05D006565 ORTHO05D008717 2.4e-126 456.1 326 72.1
Dinv03812 Davidia involucrata HOM05D006565 ORTHO05D008717 4.1e-126 455.3 336 68.8
FAN10G4168 Fragaria x ananassa HOM05D006565 ORTHO05D008717 7.0e-126 454.5 347 71.2
TWI15G0448 Tripterygium wilfordii HOM05D006565 ORTHO05D008717 1.2e-125 453.8 306 73.2
Rhsim09G0140500 Rhododendron simsii HOM05D006565 ORTHO05D008717 1.6e-125 453.4 312 73.1
A03p21520 Brassica napus HOM05D006565 ORTHO05D008717 3.5e-125 452.2 313 70.6
Medtr1g090380 Medicago truncatula HOM05D006565 ORTHO05D008717 3.5e-125 452.2 294 75.2
VMungo0720G0186 Vigna mungo HOM05D006565 ORTHO05D008717 3.5e-125 452.2 312 71.2
Psat6g171600 Pisum sativum HOM05D006565 ORTHO05D008717 1.0e-124 450.7 319 69.6
vmacro10331 Vaccinium macrocarpon HOM05D006565 ORTHO05D008717 1.3e-124 450.3 344 68.6
CsaV3_5G035170 Cucumis sativus L. HOM05D006565 ORTHO05D008717 1.7e-124 449.9 317 71.3
HanXRQChr02g0049321 Helianthus annuus HOM05D006565 ORTHO05D008717 2.9e-124 449.1 300 74.0
HanXRQChr08g0217341 Helianthus annuus HOM05D006565 ORTHO05D008717 2.9e-124 449.1 308 74.0
Sc07g0003130 Simmondsia chinensis HOM05D006565 ORTHO05D008717 1.5e-123 446.8 288 74.3
PSO339G2240 Papaver somniferum HOM05D006565 ORTHO05D008717 1.9e-123 446.4 348 65.5
COL.COLO4_10008 Corchorus olitorius HOM05D006565 ORTHO05D008717 7.3e-123 444.5 295 74.2
Sabra10G0190700 Salix brachista HOM05D006565 ORTHO05D008717 2.1e-122 443.0 332 66.9
Cc02_g09290 Coffea canephora HOM05D006565 ORTHO05D008717 4.7e-122 441.8 288 73.3
Migut.F00832 Erythranthe guttata HOM05D006565 ORTHO05D008717 6.1e-122 441.4 328 68.0
Sed0004638 Sechium edule HOM05D006565 ORTHO05D008717 6.1e-122 441.4 319 70.2
Solyc11g006420.2 Solanum lycopersicum HOM05D006565 ORTHO05D008717 6.1e-122 441.4 326 67.2
ECA233G2794 Erigeron canadensis HOM05D006565 ORTHO05D008717 1.8e-121 439.9 301 72.4
Carub.0004s2066 Capsella rubella HOM05D006565 ORTHO05D008717 4.0e-121 438.7 311 69.8
THA.LOC104801973 Tarenaya hassleriana HOM05D006565 ORTHO05D008717 4.0e-121 438.7 292 74.3
Phvul.007G137100 Phaseolus vulgaris HOM05D006565 ORTHO05D008717 8.9e-121 437.6 321 67.6
HPP92_013938 Vanilla planifolia HOM05D006565 ORTHO05D008717 1.2e-120 437.2 338 65.1
AT2G38680 Arabidopsis thaliana HOM05D006565 ORTHO05D008717 4.4e-120 435.3 323 66.9
Sopen11g002320 Solanum pennellii HOM05D006565 ORTHO05D008717 7.5e-120 434.5 292 71.2
CAN.G143.52 Capsicum annuum HOM05D006565 ORTHO05D008717 3.7e-119 432.2 282 73.4
Sp4g21020 Schrenkiella parvula HOM05D006565 ORTHO05D008717 6.4e-119 431.4 307 69.7
SGA_v2.0_scaffold90G27708 Striga asiatica HOM05D006565 ORTHO05D008717 6.4e-119 431.4 323 67.5
Lj3A921T38 Lonicera japonica HOM05D006565 ORTHO05D008717 8.3e-119 431.0 272 77.6
Os03g0648900 Oryza sativa ssp. japonica HOM05D006565 ORTHO05D008717 1.4e-118 430.3 288 72.9
ATR0697G221 Amborella trichopoda HOM05D006565 ORTHO05D008717 3.2e-118 429.1 286 72.4
AUR62034160 Chenopodium quinoa HOM05D006565 ORTHO05D008717 4.1e-118 428.7 323 65.0
Dinv06042 Davidia involucrata HOM05D006565 ORTHO05D008717 4.1e-118 428.7 276 75.7
Thhalv10016992m.g Eutrema salsugineum HOM05D006565 ORTHO05D008717 9.2e-118 427.6 297 71.4
RhsimUnG0215000 Rhododendron simsii HOM05D006565 ORTHO05D008717 1.2e-117 427.2 371 62.0
BolC3t14938H Brassica oleracea HOM05D006565 ORTHO05D008717 2.0e-117 426.4 315 67.0
CARHR133350 Cardamine hirsuta HOM05D006565 ORTHO05D008717 3.5e-117 425.6 289 72.3
BraA03t11388Z Brassica rapa HOM05D006565 ORTHO05D008717 5.9e-117 424.9 296 70.9
MSTRG.9025 Avicennia marina HOM05D006565 ORTHO05D008717 6.6e-116 421.4 292 69.2
PGSC0003DMG400014108 Solanum tuberosum HOM05D006565 ORTHO05D008717 1.5e-115 420.2 292 68.8
C03p25510 Brassica napus HOM05D006565 ORTHO05D008717 1.9e-115 419.9 310 67.4
Lsat_1_v5_gn_8_21800 Lactuca sativa HOM05D006565 ORTHO05D008717 2.5e-115 419.5 287 72.5
AUR62014278 Chenopodium quinoa HOM05D006565 ORTHO05D008717 7.3e-115 417.9 312 65.1
EL10Ac4g08734 Beta vulgaris HOM05D006565 ORTHO05D008717 3.1e-113 412.5 287 69.7
FAN21G0259 Fragaria x ananassa HOM05D006565 ORTHO05D008717 5.2e-113 411.8 277 76.9
Zm00001eb218510 Zea mays HOM05D006565 ORTHO05D008717 6.8e-113 411.4 288 68.8
Peaxi162Scf00120g01317 Petunia axillaris HOM05D006565 ORTHO05D008717 2.6e-112 409.5 327 63.3
Hund06810 Selenicereus undatus HOM05D006565 ORTHO05D008717 4.9e-111 405.2 316 65.5
Prupe.2G074100 Prunus persica HOM05D006565 ORTHO05D008717 5.0e-108 395.2 221 86.9
Nitab4.5_0001781g0210 Nicotiana tabacum HOM05D006565 ORTHO05D008717 1.5e-104 383.6 282 68.4
Oeu009252.1 Olea europaea HOM05D006565 ORTHO05D008717 2.0e-104 383.3 317 63.7
FvH4_1g27810 Fragaria vesca HOM05D006565 ORTHO05D008717 2.2e-103 379.8 299 69.2
CDE06G1733 Ceratophyllum demersum HOM05D006565 ORTHO05D008717 3.0e-100 369.4 271 68.3
SEGI_36612 Sequoiadendron giganteum HOM05D006565 ORTHO05D008717 3.3e-99 365.9 267 67.8
SMO367G1082 Selaginella moellendorffii HOM05D006565 ORTHO05D008717 7.3e-99 364.8 289 60.9
AagrBONN_evm.TU.Sc2ySwM_228.2835 Anthoceros agrestis HOM05D006565 ORTHO05D008717 3.6e-98 362.5 289 61.9
Pp3c1_24570 Physcomitrium patens HOM05D006565 ORTHO05D008717 3.1e-97 359.4 313 56.2
AL4G35960 Arabidopsis lyrata HOM05D006565 ORTHO05D008717 4.0e-97 359.0 289 63.3
Mapoly0082s0075 Marchantia polymorpha HOM05D006565 ORTHO05D008717 3.5e-93 345.9 264 62.5
PGSC0003DMG400001988 Solanum tuberosum HOM05D006565 ORTHO05D008717 9.0e-81 304.7 202 71.3
CBR_g36829 Chara braunii HOM05D006565 ORTHO05D001468 1.1e-75 287.7 392 41.8
Nitab4.5_0016854g0010 Nicotiana tabacum HOM05D006565 ORTHO05D008717 7.4e-75 285.0 205 69.3
FAN10G3234 Fragaria x ananassa HOM05D006565 ORTHO05D008717 5.1e-68 262.3 300 54.0
MBI05_g36782_MAGBIO Magnolia biondii HOM05D006565 ORTHO05D008717 4.8e-66 255.8 157 77.1
Haze_03436 Corylus avellana HOM05D006565 ORTHO05D008717 5.8e-64 248.8 270 52.2
Lj3A922G54 Lonicera japonica HOM05D006565 ORTHO05D008717 3.7e-58 229.6 162 71.0
Sabra13G0091500 Salix brachista HOM05D006565 ORTHO05D008717 5.3e-57 225.7 153 71.9
FAN10G0629 Fragaria x ananassa HOM05D006565 ORTHO05D008717 6.9e-57 225.3 230 59.1
FAN03G2487 Fragaria x ananassa HOM05D006565 ORTHO05D008717 1.5e-56 224.2 229 58.5
Potri.008G015201 Populus trichocarpa HOM05D006565 ORTHO05D008717 5.0e-55 219.2 142 74.6
PSO384G3661 Papaver somniferum HOM05D006565 ORTHO05D008717 4.8e-50 202.6 191 58.6
Glyma.10G195001 Glycine max HOM05D006565 ORTHO05D008717 4.4e-43 179.5 107 77.6
Hma1.2p1_0098F.1_g048200 Hydrangea macrophylla HOM05D006565 ORTHO05D008717 2.8e-42 176.8 106 77.4
Lj3A922G55 Lonicera japonica HOM05D006565 ORTHO05D008717 7.4e-35 152.1 89 80.9
Cpa.g.sc33.128 Carica papaya HOM05D006565 ORTHO05D008717 1.1e-30 138.3 82 79.3
Cpa.g.sc33.129 Carica papaya HOM05D006565 ORTHO05D008717 1.6e-29 134.4 91 69.2
CSS0040424 Camellia sinensis var. sinensis HOM05D006565 ORTHO05D008717 4.2e-22 109.8 66 74.2
Aqoxy6G01578 Aquilegia oxysepala HOM05D006565 ORTHO05D008717 8.0e-21 105.5 144 44.4
RhsimUnG0214900 Rhododendron simsii HOM05D006565 ORTHO05D008717 5.2e-20 102.8 79 65.8
CSS0049814 Camellia sinensis var. sinensis HOM05D006565 ORTHO05D008717 1.8e-17 94.4 60 75.0
MBI15_g31580_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D011977 1.3e-15 88.2 60 71.7
MBI08_g05402_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.7e-15 87.8 56 75.0
Aqoxy6G01581 Aquilegia oxysepala HOM05D006565 ORTHO05D000596 1.7e-10 71.2 41 75.6
Psat7g239080 Pisum sativum HOM05D005767 ORTHO05D006785 1.6e-08 64.7 81 44.4
MBI17_g02193_MAGBIO Magnolia biondii HOM05D006565 ORTHO05D011977 4.5e-08 63.2 44 70.5
MBI05_g33289_MAGBIO Magnolia biondii HOM05D006565 ORTHO05D008717 5.9e-08 62.8 44 72.7


User provided reference genes

Program Settings