Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0332131 Rosa chinensis HOM05D002559 ORTHO05D007057 3.7e-41 171.0 81 100.0
RcHm_v2.0_Chr7g0213231 Rosa chinensis HOM05D002559 ORTHO05D007057 6.8e-27 123.6 57 100.0
FAN18G1439 Fragaria x ananassa HOM05D002559 ORTHO05D007057 7.0e-24 113.6 57 93.0
FAN18G2545 Fragaria x ananassa HOM05D002559 ORTHO05D007057 7.0e-24 113.6 57 93.0
FAN13G0924 Fragaria x ananassa HOM05D002559 ORTHO05D007057 4.6e-23 110.9 57 89.5
Prupe.1G559200 Prunus persica HOM05D002559 ORTHO05D007057 1.1e-21 106.3 57 84.2
Duzib128G1541 Durio zibethinus HOM05D002559 ORTHO05D007057 4.3e-21 104.4 57 80.7
Thecc.05G254500 Theobroma cacao HOM05D002559 ORTHO05D007057 4.3e-21 104.4 57 80.7
Cpa.g.sc51.90 Carica papaya HOM05D002559 ORTHO05D007057 7.3e-21 103.6 62 75.8
Haze_19404 Corylus avellana HOM05D002559 ORTHO05D007057 7.3e-21 103.6 58 84.5
Cfa016430 Carpinus fangiana HOM05D002559 ORTHO05D007057 1.2e-20 102.8 57 82.5
COL.COLO4_36028 Corchorus olitorius HOM05D000211 ORTHO05D002682 1.2e-20 102.8 57 80.7
Duzib128G1749 Durio zibethinus HOM05D002559 ORTHO05D007057 1.2e-20 102.8 57 78.9
GSVIVG01033380001 Vitis vinifera HOM05D002559 ORTHO05D007057 2.1e-20 102.1 56 82.1
PGR042G3247 Punica granatum HOM05D002559 ORTHO05D007057 2.8e-20 101.7 55 81.8
CiPaw.09G000700 Carya illinoinensis HOM05D002559 ORTHO05D007057 4.7e-20 100.9 57 80.7
Gohir.D11G248300 Gossypium hirsutum HOM05D002559 ORTHO05D007057 4.7e-20 100.9 57 78.9
Manes.07G112700 Manihot esculenta HOM05D002559 ORTHO05D007057 4.7e-20 100.9 50 90.0
Lj3g0010749 Lotus japonicus HOM05D002559 ORTHO05D007057 8.0e-20 100.1 54 81.5
TAR369G0085 Trochodendron aralioides HOM05D002559 ORTHO05D007057 8.0e-20 100.1 57 80.7
Lalb_Chr24g0392961 Lupinus albus HOM05D002559 ORTHO05D007057 1.1e-19 99.8 57 75.4
MD12G1001600 Malus domestica HOM05D002559 ORTHO05D007057 1.1e-19 99.8 57 78.9
Potri.001G023000 Populus trichocarpa HOM05D002559 ORTHO05D007057 1.1e-19 99.8 54 81.5
Gohir.A11G237800 Gossypium hirsutum HOM05D002559 ORTHO05D007057 1.4e-19 99.4 57 77.2
Nitab4.5_0004741g0040 Nicotiana tabacum HOM05D002559 ORTHO05D007057 1.4e-19 99.4 56 80.4
TAR623G1558 Trochodendron aralioides HOM05D002559 ORTHO05D007057 1.4e-19 99.4 58 75.9
ECA248G1300 Erigeron canadensis HOM05D002559 ORTHO05D007057 1.8e-19 99.0 56 80.4
Lsat_1_v5_gn_1_58880 Lactuca sativa HOM05D002559 ORTHO05D007057 1.8e-19 99.0 56 80.4
Manes.08G148900 Manihot esculenta HOM05D002559 ORTHO05D007057 1.8e-19 99.0 48 91.7
Dinv36936 Davidia involucrata HOM05D002559 ORTHO05D007057 2.3e-19 98.6 57 77.2
TWI32G0130 Tripterygium wilfordii HOM05D002559 ORTHO05D007057 2.3e-19 98.6 57 77.2
QL05p033446 Quercus lobata HOM05D002559 ORTHO05D007057 3.1e-19 98.2 58 79.3
MD14G1001500 Malus domestica HOM05D002559 ORTHO05D007057 6.8e-19 97.1 59 78.0
Os01g0264500 Oryza sativa ssp. japonica HOM05D002559 ORTHO05D007057 6.8e-19 97.1 52 78.8
TPR.G17208 Trifolium pratense HOM05D002559 ORTHO05D007057 6.8e-19 97.1 48 91.7
CSS0010834 Camellia sinensis var. sinensis HOM05D002559 ORTHO05D007057 8.9e-19 96.7 57 75.4
MELO3C034945.2 Cucumis melo HOM05D002559 ORTHO05D007057 8.9e-19 96.7 52 82.7
CsaV3_6G053220 Cucumis sativus L. HOM05D002559 ORTHO05D007057 8.9e-19 96.7 52 82.7
QL11p027350 Quercus lobata HOM05D002559 ORTHO05D007057 8.9e-19 96.7 58 77.6
Ca_19406_v3 Cicer arietinum L. HOM05D002559 ORTHO05D007057 1.2e-18 96.3 67 70.1
Cc00_g05200 Coffea canephora HOM05D002559 ORTHO05D007057 1.2e-18 96.3 48 89.6
Sopen08g027110 Solanum pennellii HOM05D002559 ORTHO05D007057 1.2e-18 96.3 50 86.0
CAN.G1058.25 Capsicum annuum HOM05D002559 ORTHO05D007057 1.5e-18 95.9 50 86.0
Hma1.2p1_0183F.1_g080980 Hydrangea macrophylla HOM05D002559 ORTHO05D007057 1.5e-18 95.9 51 84.3
Nitab4.5_0002741g0030 Nicotiana tabacum HOM05D002559 ORTHO05D007057 1.5e-18 95.9 56 82.1
Atru.chr2.1303 Acer truncatum HOM05D002559 ORTHO05D007057 2.0e-18 95.5 57 78.9
ClCG04G002960 Citrullus lanatus HOM05D002559 ORTHO05D007057 2.0e-18 95.5 47 89.4
Hund23574 Selenicereus undatus HOM05D002559 ORTHO05D007057 2.0e-18 95.5 60 75.0
TWI60G1607 Tripterygium wilfordii HOM05D002559 ORTHO05D007057 2.0e-18 95.5 57 75.4
HanXRQChr01g0024871 Helianthus annuus HOM05D002559 ORTHO05D007057 2.6e-18 95.1 56 78.6
Peaxi162Scf00076g00818 Petunia axillaris HOM05D002559 ORTHO05D007057 2.6e-18 95.1 54 81.5
Psat0s2993g0320 Pisum sativum HOM05D002559 ORTHO05D007057 2.6e-18 95.1 48 89.6
Medtr4g053290 Medicago truncatula HOM05D002559 ORTHO05D007057 3.4e-18 94.7 48 87.5
Nn2g15893 Nelumbo nucifera HOM05D002559 ORTHO05D007057 3.4e-18 94.7 48 87.5
THA.LOC104827263 Tarenaya hassleriana HOM05D002559 ORTHO05D007057 3.4e-18 94.7 57 77.2
Ciclev10022656m.g Citrus clementina HOM05D002559 ORTHO05D007057 4.4e-18 94.4 51 80.4
Rhsim04G0086200 Rhododendron simsii HOM05D002559 ORTHO05D007057 4.4e-18 94.4 57 73.7
arahy.Tifrunner.gnm1.ann1.1FX2LZ Arachis hypogaea HOM05D002559 ORTHO05D007057 5.8e-18 94.0 55 74.5
arahy.Tifrunner.gnm1.ann1.XAZK7H Arachis hypogaea HOM05D002559 ORTHO05D007057 5.8e-18 94.0 55 74.5
Oeu003637.1 Olea europaea HOM05D002559 ORTHO05D010382 5.8e-18 94.0 49 85.7
SGA_v2.0_scaffold114G31944 Striga asiatica HOM05D002559 ORTHO05D007057 5.8e-18 94.0 55 76.4
Dinv37005 Davidia involucrata HOM05D002559 ORTHO05D007057 7.5e-18 93.6 57 73.7
Glyma.13G316700 Glycine max HOM05D002559 ORTHO05D007057 7.5e-18 93.6 53 79.2
Glyma.12G184600 Glycine max HOM05D002559 ORTHO05D007057 9.8e-18 93.2 53 79.2
Zm00001eb333270 Zea mays HOM05D002559 ORTHO05D007057 9.8e-18 93.2 52 76.9
Actinidia17309 Actinidia chinensis HOM05D002559 ORTHO05D007057 1.7e-17 92.4 57 71.9
CANSAT78G1541 Cannabis sativa HOM05D002559 ORTHO05D007057 1.7e-17 92.4 51 78.4
MSTRG.18809 Avicennia marina HOM05D002559 ORTHO05D007057 2.2e-17 92.0 55 74.5
BcaC04g18713 Brassica carinata HOM05D002559 ORTHO05D007057 2.2e-17 92.0 57 73.7
A10p21270 Brassica napus HOM05D002559 ORTHO05D007057 2.2e-17 92.0 57 73.7
C09p58730 Brassica napus HOM05D002559 ORTHO05D007057 2.2e-17 92.0 57 73.7
BolC9t58714H Brassica oleracea HOM05D002559 ORTHO05D007057 2.2e-17 92.0 57 73.7
BraA10t44190Z Brassica rapa HOM05D002559 ORTHO05D007057 2.2e-17 92.0 57 73.7
Phvul.005G124000 Phaseolus vulgaris HOM05D002559 ORTHO05D007057 2.2e-17 92.0 47 89.4
Actinidia38620 Actinidia chinensis HOM05D002559 ORTHO05D007057 3.7e-17 91.3 57 71.9
EL10Ac7g17037 Beta vulgaris HOM05D002559 ORTHO05D007057 3.7e-17 91.3 48 83.3
BcaB08g36692 Brassica carinata HOM05D002559 ORTHO05D007057 3.7e-17 91.3 57 73.7
A03p08750 Brassica napus HOM05D002559 ORTHO05D007057 3.7e-17 91.3 57 73.7
CDE09G1258 Ceratophyllum demersum HOM05D002559 ORTHO05D007057 3.7e-17 91.3 48 85.4
CsaV3_4G027570 Cucumis sativus L. HOM05D002559 ORTHO05D007057 3.7e-17 91.3 49 81.6
BcaB01g05183 Brassica carinata HOM05D002559 ORTHO05D007057 4.9e-17 90.9 57 73.7
BcaNung04944 Brassica carinata HOM05D002559 ORTHO05D007057 4.9e-17 90.9 57 73.7
C03p10180 Brassica napus HOM05D002559 ORTHO05D007057 4.9e-17 90.9 57 73.7
BolC3t13503H Brassica oleracea HOM05D002559 ORTHO05D007057 4.9e-17 90.9 57 73.7
BraA03t10196Z Brassica rapa HOM05D002559 ORTHO05D007057 4.9e-17 90.9 57 73.7
Phvul.011G094200 Phaseolus vulgaris HOM05D002559 ORTHO05D007057 4.9e-17 90.9 48 83.3
PSO339G2988 Papaver somniferum HOM05D002559 ORTHO05D007057 6.4e-17 90.5 47 85.1
VMungo1127G1947 Vigna mungo HOM05D002559 ORTHO05D007057 6.4e-17 90.5 48 85.4
BcaNung07325 Brassica carinata HOM05D002559 ORTHO05D007057 8.3e-17 90.1 57 73.7
Nn7g35814 Nelumbo nucifera HOM05D002559 ORTHO05D007057 8.3e-17 90.1 49 79.6
Aqoxy4G00339 Aquilegia oxysepala HOM05D002559 ORTHO05D007057 1.1e-16 89.7 47 85.1
PSO384G4200 Papaver somniferum HOM05D002559 ORTHO05D007057 1.4e-16 89.4 47 83.0
CDE02G0936 Ceratophyllum demersum HOM05D002559 ORTHO05D007057 1.9e-16 89.0 47 87.2
Sp6g26070 Schrenkiella parvula HOM05D002559 ORTHO05D007057 1.9e-16 89.0 57 73.7
MBI13_g37425_MAGBIO Magnolia biondii HOM05D002559 ORTHO05D007057 2.4e-16 88.6 47 83.0
Carub.0006s1632 Capsella rubella HOM05D002559 ORTHO05D007057 3.2e-16 88.2 48 81.2
Carub.0006s1654 Capsella rubella HOM05D002559 ORTHO05D007057 3.2e-16 88.2 48 81.2
CARHR194810 Cardamine hirsuta HOM05D002559 ORTHO05D007057 3.2e-16 88.2 48 81.2
Thhalv10014906m.g Eutrema salsugineum HOM05D002559 ORTHO05D007057 3.2e-16 88.2 48 81.2
unitig_748.g7790 Utricularia gibba HOM05D002559 ORTHO05D007057 4.1e-16 87.8 48 79.2
AUR62012531 Chenopodium quinoa HOM05D002559 ORTHO05D007057 5.4e-16 87.4 48 81.2
AUR62014664 Chenopodium quinoa HOM05D002559 ORTHO05D007057 5.4e-16 87.4 48 81.2
ATR0789G037 Amborella trichopoda HOM05D002559 ORTHO05D007057 7.0e-16 87.0 55 69.1
AT5G18250 Arabidopsis thaliana HOM05D002559 ORTHO05D007057 7.0e-16 87.0 48 79.2
AL3G13950 Arabidopsis lyrata HOM05D002559 ORTHO05D007057 9.2e-16 86.7 57 70.2
HPP92_021154 Vanilla planifolia HOM05D002559 ORTHO05D007057 9.2e-16 86.7 47 80.9
Aa31LG11G11330 Aethionema arabicum HOM05D002559 ORTHO05D007057 1.6e-15 85.9 57 66.7
Ah.15g090300 Amaranthus hybridus HOM05D002559 ORTHO05D007057 3.5e-15 84.7 57 71.9
AT3G04040 Arabidopsis thaliana HOM05D002559 ORTHO05D007057 3.5e-15 84.7 57 68.4
Thhalv10021750m.g Eutrema salsugineum HOM05D002559 ORTHO05D007057 4.6e-15 84.3 47 78.7
Gorai.007G264600 Gossypium raimondii HOM05D002559 ORTHO05D007057 4.6e-15 84.3 84 52.4
SalBow7G1655 Salvia bowleyana HOM05D002559 ORTHO05D007057 3.0e-14 81.6 63 61.9
Duzib177G0252 Durio zibethinus HOM05D002559 ORTHO05D007057 8.6e-14 80.1 57 66.7
PSO541G3435 Papaver somniferum HOM05D002559 ORTHO05D007057 6.2e-12 73.9 40 80.0
FvH4_5g23840 Fragaria vesca HOM05D002559 ORTHO05D007057 1.1e-11 73.2 35 97.1
AagrBONN_evm.TU.Sc2ySwM_362.2630 Anthoceros agrestis HOM05D002559 ORTHO05D007057 4.0e-11 71.2 47 57.4
Mapoly0006s0258 Marchantia polymorpha HOM05D002559 ORTHO05D007057 4.0e-11 71.2 46 60.9
Pp3c26_10970 Physcomitrium patens HOM05D002559 ORTHO05D007057 4.0e-11 71.2 46 58.7
SGA_v2.0_scaffold261G45917 Striga asiatica HOM05D002559 ORTHO05D007057 4.0e-11 71.2 38 84.2
Sc05g0008220 Simmondsia chinensis HOM05D002559 ORTHO05D007057 3.4e-10 68.2 37 83.8
Eucgr.A02080 Eucalyptus grandis HOM05D002559 ORTHO05D007057 2.9e-09 65.1 46 58.7
Pp3c4_24240 Physcomitrium patens HOM05D002559 ORTHO05D007057 2.9e-09 65.1 68 44.1
Aqoxy1G03079 Aquilegia oxysepala HOM05D002559 ORTHO05D007057 3.7e-09 64.7 35 82.9
A03p08730 Brassica napus HOM05D002559 ORTHO05D007057 2.4e-08 62.0 52 53.8
SHI14703 Sapria himalayana HOM05D002559 ORTHO05D007057 3.2e-08 61.6 35 77.1


User provided reference genes

Program Settings