Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1617.8 851 100.0
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1536.2 851 96.1
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1523.1 854 95.2
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 0.0e+00 1427.9 852 89.7
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1426.0 852 89.8
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1414.1 852 89.3
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1412.9 863 88.3
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 0.0e+00 1407.1 861 88.6
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 0.0e+00 1232.6 849 77.5
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 0.0e+00 1231.1 858 77.7
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 0.0e+00 1144.0 765 79.6
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 0.0e+00 1110.5 859 68.8
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 0.0e+00 1096.3 852 70.3
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 4.6e-307 1057.7 955 63.0
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 7.3e-305 1050.4 868 65.6
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 2.8e-304 1048.5 879 65.5
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 2.0e-302 1042.3 853 65.5
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 4.7e-296 1021.1 858 63.5
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 5.8e-294 1014.2 838 64.8
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 1.1e-292 1010.0 832 65.9
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.1e-292 1008.1 866 62.4
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 4.1e-292 1008.1 866 62.2
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 1.0e-290 1003.4 859 63.6
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 8.6e-290 1000.3 865 64.2
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.1e-288 995.7 866 61.9
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 3.4e-286 988.4 839 66.3
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 4.4e-286 988.0 868 62.4
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 7.6e-286 987.3 873 63.2
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 2.1e-283 979.2 868 62.9
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 2.3e-282 975.7 887 61.9
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.4e-279 965.7 850 61.8
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 9.9e-278 960.3 835 63.8
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 2.9e-277 958.7 867 61.9
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 2.4e-276 955.7 863 61.9
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 4.2e-276 954.9 864 62.0
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 3.5e-275 951.8 903 60.7
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 1.5e-273 946.4 852 61.3
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 2.5e-273 945.7 830 62.5
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 7.3e-273 944.1 862 61.1
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 1.3e-272 943.3 840 62.0
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.4e-271 939.9 869 60.4
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 3.8e-269 931.8 867 58.7
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 5.4e-268 927.9 844 60.0
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 1.6e-267 926.4 818 61.7
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 1.6e-267 926.4 846 61.6
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.3e-266 923.3 835 60.2
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 1.5e-265 919.8 744 68.4
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 3.3e-265 918.7 865 58.5
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 4.3e-265 918.3 875 59.5
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.3e-265 918.3 832 59.9
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 4.3e-265 918.3 872 59.4
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 7.4e-265 917.5 870 59.7
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 4.8e-264 914.8 840 60.5
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 8.1e-264 914.1 839 60.1
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 4.0e-263 911.8 755 66.1
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 1.3e-261 906.7 903 57.7
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 1.4e-260 903.3 861 57.8
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 2.4e-260 902.5 862 58.8
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 5.5e-260 901.4 722 67.7
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 5.5e-260 901.4 839 59.5
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 4.6e-259 898.3 860 58.0
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 1.0e-258 897.1 869 58.7
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 1.8e-258 896.3 847 58.7
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 5.1e-258 894.8 835 59.0
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 8.7e-258 894.0 856 59.3
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 1.6e-256 889.8 868 57.8
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 2.1e-256 889.4 873 57.8
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 8.2e-256 887.5 866 57.2
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 9.0e-255 884.0 889 56.5
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 4.5e-254 881.7 859 57.4
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 6.5e-253 877.9 850 58.1
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 4.2e-252 875.2 835 58.1
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 1.5e-249 866.7 872 56.5
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 6.3e-248 861.3 923 55.3
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 2.4e-247 859.4 831 59.9
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 2.6e-246 855.9 767 61.3
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 6.5e-245 851.3 846 57.1
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 4.2e-244 848.6 835 56.9
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 1.8e-242 843.2 872 56.2
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 3.0e-242 842.4 826 58.7
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-241 840.5 866 57.3
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 3.3e-241 839.0 826 58.6
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 5.7e-241 838.2 858 55.6
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 1.3e-240 837.0 867 55.1
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 2.8e-240 835.9 834 58.2
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 3.7e-240 835.5 833 58.3
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-239 833.9 873 55.9
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.1e-239 832.4 915 52.9
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 6.9e-239 831.2 839 55.9
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.0e-237 827.4 791 59.3
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 2.9e-237 825.9 830 58.2
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.2e-235 820.5 867 55.6
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 4.7e-235 818.5 869 55.8
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.4e-234 817.0 840 54.5
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 2.0e-233 813.1 870 55.5
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 9.7e-233 810.8 835 56.0
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 8.2e-232 807.7 827 57.7
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 8.2e-232 807.7 862 54.2
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 8.2e-232 807.7 875 53.9
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 7.0e-231 804.7 727 61.1
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.2e-228 795.8 995 48.5
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.2e-227 793.9 817 55.7
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 4.7e-227 792.0 841 55.1
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.7e-224 783.5 820 54.5
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 2.3e-218 763.1 829 55.6
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 2.6e-217 759.6 794 55.2
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 3.3e-217 759.2 853 51.9
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 7.5e-217 758.1 726 57.6
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 4.8e-216 755.4 743 58.1
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 9.4e-212 741.1 788 55.5
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 1.6e-211 740.3 743 58.7
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 2.6e-209 733.0 557 72.2
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.3e-208 730.7 866 50.1
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 7.7e-206 721.5 828 51.0
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 1.0e-205 721.1 610 62.5
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 2.8e-203 713.0 835 50.9
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 5.4e-199 698.7 825 50.3
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 1.1e-191 674.5 829 49.1
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.5e-188 664.1 841 48.8
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.2e-184 650.2 556 63.8
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 7.8e-182 641.7 855 46.2
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 9.5e-180 634.8 866 45.5
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 9.9e-177 624.8 1087 39.8
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.1e-171 607.1 452 72.6
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.0e-157 560.1 838 43.4
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 4.3e-156 556.2 539 57.0
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 9.6e-156 555.1 817 43.2
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.1e-154 551.6 882 43.3
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 9.0e-154 548.5 773 44.2
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 6.9e-146 522.3 765 43.5
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 4.9e-144 516.2 553 53.5
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 6.9e-130 469.2 597 49.4
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 2.2e-128 464.2 863 37.0
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 3.6e-118 430.3 545 47.7
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.2e-112 411.0 348 65.5
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 1.2e-110 405.2 805 35.9
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 7.2e-95 352.8 645 35.0
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 2.2e-91 341.3 696 34.8
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 5.4e-90 336.7 435 48.5
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.8e-86 324.3 254 67.7
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 4.7e-86 323.6 313 56.2
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.3e-64 251.5 283 55.5
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 4.0e-61 240.7 138 91.3
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.6e-52 211.5 195 62.6
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.6e-52 209.9 244 49.2
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 1.8e-37 162.2 170 55.9
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 3.5e-33 147.9 183 47.0
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 2.0e-28 132.1 273 38.1
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 2.0e-28 132.1 273 38.1
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 1.0e-24 119.8 349 28.7
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 2.5e-23 115.2 181 42.5
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 2.5e-23 115.2 181 42.5
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 1.0e-19 103.2 176 44.3
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 3.2e-18 98.2 132 47.0
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 7.2e-18 97.1 174 40.2
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 4.6e-17 94.4 60 80.0
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 9.7e-15 86.7 92 53.3
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 3.1e-13 81.6 201 35.8
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 1.5e-12 79.3 147 36.1
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 2.9e-11 75.1 101 42.6
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 5.0e-11 74.3 209 31.1
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 9.4e-10 70.1 63 57.1
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.2e-09 69.7 63 54.0
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 6.1e-09 67.4 37 91.9
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 7.9e-09 67.0 220 25.9
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 8.8e-08 63.5 47 61.7
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 7.4e-07 60.5 78 48.7
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.7e-06 59.3 69 49.3
Dinv34201 Davidia involucrata HOM05D004054 ORTHO05D004945 6.3e-06 57.4 60 53.3


User provided reference genes

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