Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0331851 Rosa chinensis HOM05D007308 ORTHO05D009157 4.0e-81 304.7 151 100.0
Prupe.2G071800 Prunus persica HOM05D007308 ORTHO05D009157 1.5e-56 223.0 142 75.4
CsaV3_5G035250 Cucumis sativus L. HOM05D007308 ORTHO05D009157 1.0e-52 210.3 134 74.6
Rhsim09G0141500 Rhododendron simsii HOM05D007308 ORTHO05D009157 3.0e-52 208.8 146 69.9
ClCG05G021890 Citrullus lanatus HOM05D007308 ORTHO05D009157 1.9e-51 206.1 134 72.4
vmacro10315 Vaccinium macrocarpon HOM05D007308 ORTHO05D009157 4.3e-51 204.9 145 68.3
Dinv08592 Davidia involucrata HOM05D007308 ORTHO05D009157 5.6e-51 204.5 132 75.0
CANSAT56G1109 Cannabis sativa HOM05D007308 ORTHO05D009157 2.1e-50 202.6 133 72.2
Potri.010G241700 Populus trichocarpa HOM05D007308 ORTHO05D009157 8.1e-50 200.7 143 68.5
Hma1.2p1_0457F.1_g156910 Hydrangea macrophylla HOM05D007308 ORTHO05D009157 2.4e-49 199.1 132 72.0
CiPaw.13G043100 Carya illinoinensis HOM05D007308 ORTHO05D009157 5.3e-49 198.0 137 70.1
QL04p047115 Quercus lobata HOM05D007308 ORTHO05D009157 4.5e-48 194.9 139 67.6
HanXRQChr05g0147281 Helianthus annuus HOM05D007308 ORTHO05D009157 7.6e-48 194.1 152 64.5
Sed0004755 Sechium edule HOM05D007308 ORTHO05D009157 1.0e-47 193.7 128 70.3
Sabra10G0189200 Salix brachista HOM05D000139 ORTHO05D000103 1.7e-47 193.0 132 71.2
MD07G1062000 Malus domestica HOM05D007308 ORTHO05D009157 2.9e-47 192.2 151 65.6
GSVIVG01034647001 Vitis vinifera HOM05D007308 ORTHO05D009157 2.9e-47 192.2 143 65.0
MSTRG.27555 Avicennia marina HOM05D007308 ORTHO05D009157 3.8e-47 191.8 152 61.2
ECA232G3668 Erigeron canadensis HOM05D007308 ORTHO05D009157 4.9e-47 191.4 144 65.3
CSS0004692 Camellia sinensis var. sinensis HOM05D007308 ORTHO05D009157 8.4e-47 190.7 145 64.8
Sed0002245 Sechium edule HOM05D007308 ORTHO05D009157 8.4e-47 190.7 132 70.5
TWI15G0952 Tripterygium wilfordii HOM05D007308 ORTHO05D009157 1.9e-46 189.5 140 66.4
TAR623G1715 Trochodendron aralioides HOM05D007308 ORTHO05D009157 4.2e-46 188.3 143 64.3
AL6G14490 Arabidopsis lyrata HOM05D007308 ORTHO05D009157 5.5e-46 188.0 142 65.5
Migut.F00856 Erythranthe guttata HOM05D007308 ORTHO05D009157 1.2e-45 186.8 132 68.2
Ciclev10016517m.g Citrus clementina HOM05D007308 ORTHO05D009157 1.6e-45 186.4 135 65.9
Cc02_g09470 Coffea canephora HOM05D007308 ORTHO05D009157 1.6e-45 186.4 142 62.7
AT5G04830 Arabidopsis thaliana HOM05D007308 ORTHO05D009157 2.7e-45 185.7 133 68.4
Eucgr.J00279 Eucalyptus grandis HOM05D007308 ORTHO05D009157 3.5e-45 185.3 137 67.2
THA.LOC104816471 Tarenaya hassleriana HOM05D007308 ORTHO05D009157 3.5e-45 185.3 135 68.1
Lalb_Chr02g0150981 Lupinus albus HOM05D007308 ORTHO05D009157 7.9e-45 184.1 134 67.9
Actinidia34730 Actinidia chinensis HOM05D000139 ORTHO05D000103 1.0e-44 183.7 131 67.2
CARHR208450 Cardamine hirsuta HOM05D007308 ORTHO05D009157 1.0e-44 183.7 138 65.2
Gorai.013G010700 Gossypium raimondii HOM05D007308 ORTHO05D009157 1.0e-44 183.7 126 70.6
Medtr1g090630 Medicago truncatula HOM05D007308 ORTHO05D009157 1.0e-44 183.7 133 66.9
Glyma.20G194000 Glycine max HOM05D007308 ORTHO05D009157 1.3e-44 183.3 140 66.4
Nn2g14273 Nelumbo nucifera HOM05D007308 ORTHO05D009157 2.3e-44 182.6 133 66.2
Lsat_1_v5_gn_3_53161 Lactuca sativa HOM05D007308 ORTHO05D009157 3.0e-44 182.2 115 74.8
Aa31LG11G5650 Aethionema arabicum HOM05D007308 ORTHO05D009157 3.9e-44 181.8 142 65.5
Gohir.D13G010000 Gossypium hirsutum HOM05D007308 ORTHO05D009157 3.9e-44 181.8 126 69.8
Nitab4.5_0001047g0020 Nicotiana tabacum HOM05D007308 ORTHO05D009157 6.7e-44 181.0 133 67.7
Sabra08G0011300 Salix brachista HOM05D007308 ORTHO05D009157 6.7e-44 181.0 123 70.7
CDE02G0914 Ceratophyllum demersum HOM05D007308 ORTHO05D009157 1.5e-43 179.9 135 63.7
Gohir.A13G009300 Gossypium hirsutum HOM05D007308 ORTHO05D009157 1.9e-43 179.5 126 69.0
Phvul.007G138800 Phaseolus vulgaris HOM05D007308 ORTHO05D009157 1.9e-43 179.5 138 67.4
Sc20g0001110 Simmondsia chinensis HOM05D007308 ORTHO05D009157 2.5e-43 179.1 135 66.7
Carub.0006s0371 Capsella rubella HOM05D007308 ORTHO05D009157 3.3e-43 178.7 141 63.1
C03p02230 Brassica napus HOM05D007308 ORTHO05D009157 5.7e-43 177.9 132 65.9
BolC3t12774H Brassica oleracea HOM05D007308 ORTHO05D009157 5.7e-43 177.9 132 65.9
Glyma.10G196200 Glycine max HOM05D007308 ORTHO05D009157 7.4e-43 177.6 128 68.8
BcaB01g05916 Brassica carinata HOM05D007308 ORTHO05D009157 9.6e-43 177.2 132 65.9
A10p31380 Brassica napus HOM05D007308 ORTHO05D009157 9.6e-43 177.2 138 65.9
Peaxi162Scf00725g00524 Petunia axillaris HOM05D007308 ORTHO05D009157 9.6e-43 177.2 135 63.7
BcaC06g32190 Brassica carinata HOM05D007308 ORTHO05D009157 1.3e-42 176.8 143 63.6
Aqoxy1G00692 Aquilegia oxysepala HOM05D007308 ORTHO05D009157 1.6e-42 176.4 129 66.7
arahy.Tifrunner.gnm1.ann1.I1QH9V Arachis hypogaea HOM05D007308 ORTHO05D009157 1.6e-42 176.4 120 69.2
arahy.Tifrunner.gnm1.ann1.ZU0NEU Arachis hypogaea HOM05D007308 ORTHO05D009157 1.6e-42 176.4 128 65.6
Thecc.10G116800 Theobroma cacao HOM05D007308 ORTHO05D009157 2.1e-42 176.0 136 66.9
Sp6g38000 Schrenkiella parvula HOM05D007308 ORTHO05D009157 3.7e-42 175.3 141 63.1
C09p72050 Brassica napus HOM05D007308 ORTHO05D009157 4.8e-42 174.9 138 64.5
MBI17_g22148_MAGBIO Magnolia biondii HOM05D007308 ORTHO05D009157 6.3e-42 174.5 144 62.5
PGR044G1814 Punica granatum HOM05D007308 ORTHO05D009157 6.3e-42 174.5 133 63.9
Duzib106G1839 Durio zibethinus HOM05D007308 ORTHO05D009157 1.1e-41 173.7 141 63.8
A03p01870 Brassica napus HOM05D007308 ORTHO05D009157 1.4e-41 173.3 144 62.5
BraA03t09557Z Brassica rapa HOM05D007308 ORTHO05D009157 1.4e-41 173.3 144 62.5
Lj5g0023307 Lotus japonicus HOM05D007308 ORTHO05D009157 1.8e-41 172.9 128 64.8
PGR044G1810 Punica granatum HOM05D007308 ORTHO05D009157 1.8e-41 172.9 145 57.2
Haze_03470 Corylus avellana HOM05D007308 ORTHO05D009157 2.4e-41 172.6 147 58.5
PGSC0003DMG400001980 Solanum tuberosum HOM05D007308 ORTHO05D009157 3.1e-41 172.2 131 66.4
Thhalv10014751m.g Eutrema salsugineum HOM05D007308 ORTHO05D009157 4.1e-41 171.8 138 63.0
VMungo0720G2616 Vigna mungo HOM05D007308 ORTHO05D009157 4.1e-41 171.8 137 65.0
BraA10t45184Z Brassica rapa HOM05D007308 ORTHO05D009157 1.2e-40 170.2 149 62.4
Lj3C924T9 Lonicera japonica HOM05D007308 ORTHO05D009157 1.2e-40 170.2 175 53.7
Sopen11g002410 Solanum pennellii HOM05D007308 ORTHO05D009157 1.5e-40 169.9 111 73.0
BolC9t59950H Brassica oleracea HOM05D007308 ORTHO05D009157 2.0e-40 169.5 151 60.3
unitig_32.g11899 Utricularia gibba HOM05D007308 ORTHO05D009157 2.6e-40 169.1 131 62.6
ATR0772G202 Amborella trichopoda HOM05D007308 ORTHO05D009157 3.4e-40 168.7 135 61.5
Solyc11g006505.1 Solanum lycopersicum HOM05D007308 ORTHO05D009157 4.5e-40 168.3 141 61.0
Lalb_Chr21g0312841 Lupinus albus HOM05D007308 ORTHO05D009157 2.9e-39 165.6 111 71.2
PSO339G2601 Papaver somniferum HOM05D007308 ORTHO05D009157 5.0e-39 164.9 117 66.7
SalBow3G3836 Salvia bowleyana HOM05D007308 ORTHO05D009157 6.5e-39 164.5 119 67.2
SGA_v2.0_scaffold272G46352 Striga asiatica HOM05D007308 ORTHO05D009157 8.5e-39 164.1 208 46.2
PSO384G3587 Papaver somniferum HOM05D007308 ORTHO05D009157 2.5e-38 162.5 141 57.4
Hund06794 Selenicereus undatus HOM05D007308 ORTHO05D009157 2.1e-37 159.5 135 60.7
Zm00001eb362380 Zea mays HOM05D007308 ORTHO05D009157 2.7e-37 159.1 113 62.8
SEGI_29808 Sequoiadendron giganteum HOM05D007308 ORTHO05D009157 6.1e-37 157.9 136 57.4
HPP92_005473 Vanilla planifolia HOM05D007308 ORTHO05D009157 1.3e-36 156.8 112 65.2
Os01g0965900 Oryza sativa ssp. japonica HOM05D007308 ORTHO05D009157 1.6e-34 149.8 109 65.1
CSS0017788 Camellia sinensis var. sinensis HOM05D007308 ORTHO05D009157 4.5e-32 141.7 132 55.3
MELO3C012339.2 Cucumis melo HOM05D007308 ORTHO05D009157 1.0e-31 140.6 100 68.0
SEGI_14438 Sequoiadendron giganteum HOM05D007308 ORTHO05D009157 1.7e-31 139.8 112 62.5
Pp3c14_20980 Physcomitrium patens HOM05D007308 ORTHO05D009157 2.2e-31 139.4 144 50.7
Mapoly0021s0141 Marchantia polymorpha HOM05D007308 ORTHO05D009157 3.8e-31 138.7 123 56.1
SMO143G0271 Selaginella moellendorffii HOM05D007308 ORTHO05D009157 1.9e-30 136.3 127 55.1
AagrBONN_evm.TU.Sc2ySwM_344.2550 Anthoceros agrestis HOM05D007308 ORTHO05D009157 2.1e-29 132.9 137 50.4
Pp3c19_15880 Physcomitrium patens HOM05D007308 ORTHO05D009157 1.0e-28 130.6 142 46.5
CiPaw.14G034600 Carya illinoinensis HOM05D007308 ORTHO05D009157 1.1e-27 127.1 157 47.8
SMO265G0003 Selaginella moellendorffii HOM05D007308 ORTHO05D009157 7.7e-24 114.4 109 56.9
Manes.10G060700 Manihot esculenta HOM05D007308 ORTHO05D009157 3.6e-21 105.5 78 62.8
Pp3c2_31450 Physcomitrium patens HOM05D007308 ORTHO05D009157 2.3e-20 102.8 106 51.9
Pp3c1_28520 Physcomitrium patens HOM05D007308 ORTHO05D009157 6.5e-15 84.7 82 51.2
BcaNung05151 Brassica carinata HOM05D007308 ORTHO05D009157 5.5e-14 81.6 115 45.2
Actinidia27055 Actinidia chinensis HOM05D007308 ORTHO05D009157 1.8e-12 76.6 90 51.1
CBR_g30213 Chara braunii HOM05D007308 ORTHO05D009157 1.2e-11 73.9 72 48.6
Potri.008G017701 Populus trichocarpa HOM05D007308 ORTHO05D009157 3.5e-08 62.4 38 68.4


User provided reference genes

Program Settings