Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 5.0e-36 154.1 87 100.0
FvH4_7g05151 Fragaria vesca HOM05D007506 ORTHO05D008409 1.8e-25 119.0 90 81.1
FAN05G5073 Fragaria x ananassa HOM05D007506 ORTHO05D008409 9.2e-22 106.7 84 79.8
FAN28G2052 Fragaria x ananassa HOM05D007506 ORTHO05D008409 2.1e-21 105.5 83 79.5
FAN08G2571 Fragaria x ananassa HOM05D007506 ORTHO05D008409 6.0e-21 104.0 87 75.9
FAN03G1835 Fragaria x ananassa HOM05D007506 ORTHO05D008409 6.6e-20 100.5 88 76.1
FAN01G2227 Fragaria x ananassa HOM05D002241 ORTHO05D002458 2.1e-18 95.5 93 69.9
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 3.1e-17 91.7 86 62.8
MD07G1070900 Malus domestica HOM05D007506 ORTHO05D008409 6.8e-17 90.5 85 68.2
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 2.2e-15 85.5 91 58.2
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 1.4e-14 82.8 77 62.3
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 3.2e-14 81.6 85 60.0
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 5.4e-14 80.9 89 57.3
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 9.2e-14 80.1 85 60.0
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 1.2e-13 79.7 69 69.6
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 4.6e-13 77.8 61 73.8
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 1.0e-12 76.6 84 56.0
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 2.3e-12 75.5 66 68.2
QL04p046828 Quercus lobata HOM05D007506 ORTHO05D008409 3.0e-12 75.1 86 57.0
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 5.1e-12 74.3 65 67.7
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 8.7e-12 73.6 56 71.4
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 8.7e-12 73.6 85 57.6
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 1.5e-11 72.8 57 71.9
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 3.3e-11 71.6 63 71.4
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 7.3e-11 70.5 66 65.2
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 9.6e-11 70.1 86 57.0
TPR.G2499 Trifolium pratense HOM05D007506 ORTHO05D008409 1.6e-10 69.3 72 63.9
MBI17_g08330_MAGBIO Magnolia biondii HOM05D007506 ORTHO05D008409 2.8e-10 68.6 83 51.8
Medtr1g111840 Medicago truncatula HOM05D007506 ORTHO05D008409 2.8e-10 68.6 87 57.5
TWI38G1985 Tripterygium wilfordii HOM05D007506 ORTHO05D008409 3.6e-10 68.2 49 71.4
Lalb_Chr06g0166331 Lupinus albus HOM05D007506 ORTHO05D008409 6.2e-10 67.4 81 54.3
Sabra10G0188200 Salix brachista HOM05D007506 ORTHO05D008409 6.2e-10 67.4 95 51.6
CANSAT56G4328 Cannabis sativa HOM05D007506 ORTHO05D008409 8.1e-10 67.0 87 49.4
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 8.1e-10 67.0 86 61.6
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 1.4e-09 66.2 85 52.9
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 1.8e-09 65.9 69 62.3
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.8e-09 65.9 74 56.8
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 3.1e-09 65.1 65 58.5
AL6G14410 Arabidopsis lyrata HOM05D012863 ORTHO05D008409 4.0e-09 64.7 89 51.7
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 5.3e-09 64.3 60 68.3
Cfa010331 Carpinus fangiana HOM05D007506 ORTHO05D008409 5.3e-09 64.3 53 69.8
PSO801G0534 Papaver somniferum HOM05D007506 ORTHO05D008409 6.9e-09 63.9 87 50.6
SEGI_39886 Sequoiadendron giganteum HOM05D007506 ORTHO05D008409 1.2e-08 63.2 59 64.4
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 1.2e-08 63.2 41 78.0
Carub.0006s0364 Capsella rubella HOM05D012863 ORTHO05D008409 1.5e-08 62.8 87 50.6
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 1.5e-08 62.8 65 60.0
Lalb_Chr02g0146201 Lupinus albus HOM05D007506 ORTHO05D008409 1.5e-08 62.8 88 51.1
PSO339G4482 Papaver somniferum HOM05D007506 ORTHO05D008409 1.5e-08 62.8 87 50.6
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 2.0e-08 62.4 87 54.0
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 2.0e-08 62.4 66 57.6
Hma1.2p1_0756F.1_g213210 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 3.4e-08 61.6 58 58.6
Hma1.2p1_0756F.1_g213215 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 3.4e-08 61.6 58 58.6
Hma1.2p1_1491F.1_g286710 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 3.4e-08 61.6 58 58.6
CiPaw.13G041100 Carya illinoinensis HOM05D007506 ORTHO05D008409 4.4e-08 61.2 78 52.6
VMungo0720G0153 Vigna mungo HOM05D007506 ORTHO05D008409 4.4e-08 61.2 84 53.6
CDE07G1652 Ceratophyllum demersum HOM05D057737 ORTHO05D008409 7.6e-08 60.5 64 56.2
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 9.9e-08 60.1 63 60.3
Zm00001eb252110 Zea mays HOM05D000188 ORTHO05D003976 9.9e-08 60.1 76 51.3
EL10Ac4g08692 Beta vulgaris HOM05D007506 ORTHO05D008409 1.3e-07 59.7 72 58.3
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.3e-07 59.7 61 59.0
CsaV3_6G004310 Cucumis sativus L. HOM05D007506 ORTHO05D008409 1.7e-07 59.3 58 65.5
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.7e-07 59.3 61 59.0
CDE12G0642 Ceratophyllum demersum HOM05D007506 ORTHO05D008409 2.9e-07 58.5 69 47.8
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 2.9e-07 58.5 58 62.1
Os02g0533800 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 2.9e-07 58.5 63 55.6
MELO3C019903.2 Cucumis melo HOM05D007506 ORTHO05D008409 3.8e-07 58.2 58 62.1
Zm00001eb242800 Zea mays HOM05D007506 ORTHO05D008409 4.9e-07 57.8 73 50.7
COL.COLO4_37375 Corchorus olitorius HOM05D007506 ORTHO05D008409 6.4e-07 57.4 92 47.8
Phvul.007G023500 Phaseolus vulgaris HOM05D007506 ORTHO05D008409 6.4e-07 57.4 88 52.3
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 8.4e-07 57.0 87 48.3
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 8.4e-07 57.0 60 58.3
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 8.4e-07 57.0 89 44.9
arahy.Tifrunner.gnm1.ann1.DEP6R1 Arachis hypogaea HOM05D007506 ORTHO05D008409 1.1e-06 56.6 62 64.5
arahy.Tifrunner.gnm1.ann1.MBF964 Arachis hypogaea HOM05D007506 ORTHO05D008409 1.1e-06 56.6 62 64.5
Oeu024806.1 Olea europaea HOM05D007506 ORTHO05D008409 1.1e-06 56.6 82 48.8
Sp6g38070 Schrenkiella parvula HOM05D012863 ORTHO05D008409 1.9e-06 55.8 67 53.7
Glyma.20G110900 Glycine max HOM05D007506 ORTHO05D008409 2.4e-06 55.5 88 51.1
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 3.2e-06 55.1 67 55.2
MD11G1004700 Malus domestica HOM05D007506 ORTHO05D008409 3.2e-06 55.1 60 63.3
Aqoxy7G00782 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 5.4e-06 54.3 82 50.0
arahy.Tifrunner.gnm1.ann1.KXIJ9T Arachis hypogaea HOM05D007506 ORTHO05D008409 5.4e-06 54.3 53 58.5
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.4e-06 54.3 63 50.8
HanXRQChr12g0368271 Helianthus annuus HOM05D021830 ORTHO05D008409 5.4e-06 54.3 61 59.0
unitig_899.g14468 Utricularia gibba HOM05D007506 ORTHO05D008409 5.4e-06 54.3 42 64.3
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 7.1e-06 53.9 44 63.6
Psat6g238400 Pisum sativum HOM05D007506 ORTHO05D008409 7.1e-06 53.9 90 48.9
Solyc11g006750.1 Solanum lycopersicum HOM05D007506 ORTHO05D008409 7.1e-06 53.9 58 60.3
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 9.3e-06 53.5 61 50.8
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 9.3e-06 53.5 60 48.3


User provided reference genes

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