Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 2.0e-128 462.6 262 100.0
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 2.9e-127 458.8 262 97.7
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 5.3e-113 411.4 262 89.7
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 5.8e-112 407.9 262 89.7
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.5e-104 381.7 223 92.8
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 5.5e-94 348.2 260 79.2
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 4.8e-90 335.1 259 74.9
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 9.4e-78 294.3 266 67.3
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 8.8e-76 287.7 272 67.6
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 7.4e-75 284.6 240 66.7
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 1.3e-74 283.9 220 68.6
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 3.7e-74 282.3 255 68.2
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 3.7e-74 282.3 259 66.8
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.4e-73 280.4 260 63.8
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 4.1e-73 278.9 219 70.3
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 5.3e-73 278.5 257 62.3
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.6e-72 276.9 263 62.4
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 2.6e-72 276.2 262 61.8
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 4.5e-72 275.4 263 65.4
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 7.7e-72 274.6 263 65.8
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 2.9e-71 272.7 220 68.2
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 3.8e-71 272.3 263 65.4
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 5.0e-71 271.9 241 63.9
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 8.5e-71 271.2 251 61.4
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.5e-70 270.4 253 64.0
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 1.5e-70 270.4 197 73.6
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 2.5e-70 269.6 228 67.1
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 4.2e-70 268.9 251 61.0
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 3.6e-69 265.8 263 60.8
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 4.7e-69 265.4 259 59.8
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 4.7e-69 265.4 234 64.1
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.8e-68 263.5 264 62.1
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 2.3e-68 263.1 227 65.2
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 3.0e-68 262.7 260 62.3
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 4.0e-68 262.3 251 60.6
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 5.2e-68 261.9 251 59.4
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 8.8e-68 261.2 255 63.5
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 8.8e-68 261.2 240 65.4
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 3.4e-67 259.2 225 64.4
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 3.4e-67 259.2 224 65.2
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 5.7e-67 258.5 261 59.0
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 9.7e-67 257.7 284 57.7
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 9.7e-67 257.7 261 61.7
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 1.3e-66 257.3 258 56.6
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 2.8e-66 256.1 219 66.7
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 3.7e-66 255.8 222 66.2
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 8.3e-66 254.6 218 63.8
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 1.1e-65 254.2 261 59.4
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 1.1e-65 254.2 232 65.5
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 1.4e-65 253.8 225 63.6
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 2.4e-65 253.1 259 57.1
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 3.1e-65 252.7 261 58.2
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 3.1e-65 252.7 259 57.1
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 4.1e-65 252.3 229 63.3
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.6e-64 250.4 290 62.1
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 5.9e-64 248.4 261 57.5
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 2.2e-63 246.5 204 64.2
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 6.5e-63 245.0 216 66.7
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 7.2e-62 241.5 232 64.7
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 9.4e-62 241.1 256 59.4
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 9.4e-62 241.1 266 59.0
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 1.2e-61 240.7 197 66.5
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 6.1e-61 238.4 252 60.3
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 6.1e-61 238.4 255 56.1
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 1.0e-60 237.7 264 56.1
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 1.0e-60 237.7 232 62.9
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 1.4e-60 237.3 262 55.7
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 6.8e-60 235.0 264 55.7
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 8.8e-60 234.6 275 57.5
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 1.2e-59 234.2 266 57.1
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.5e-59 233.8 254 57.1
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 1.5e-59 233.8 227 60.8
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 9.8e-59 231.1 263 57.8
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 1.3e-58 230.7 261 57.5
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 8.3e-58 228.0 264 57.6
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.1e-57 227.6 237 57.4
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 1.4e-57 227.3 232 57.8
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 1.4e-57 227.3 232 57.8
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 4.1e-57 225.7 135 88.9
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 1.6e-56 223.8 264 56.8
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 3.5e-56 222.6 233 57.1
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 3.5e-56 222.6 225 56.0
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 5.9e-56 221.9 184 69.0
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 1.3e-55 220.7 228 57.0
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 1.7e-55 220.3 214 58.9
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 1.7e-55 220.3 214 58.9
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 1.7e-55 220.3 214 58.9
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 2.3e-55 219.9 194 63.4
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 2.3e-55 219.9 164 75.6
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 6.6e-55 218.4 221 57.9
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 9.5e-54 214.5 261 55.6
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 1.2e-53 214.2 254 53.1
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 4.7e-53 212.2 259 51.7
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 8.0e-53 211.5 264 54.9
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 3.0e-52 209.5 251 55.0
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 8.9e-52 208.0 224 56.7
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 5.7e-51 205.3 250 54.0
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 9.8e-51 204.5 268 50.4
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 9.8e-51 204.5 260 50.0
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 1.3e-50 204.1 219 54.3
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 3.7e-50 202.6 258 51.2
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 6.3e-50 201.8 247 53.4
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 8.3e-50 201.4 247 53.4
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 8.3e-50 201.4 183 60.1
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 1.4e-49 200.7 226 52.7
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.4e-49 199.9 264 47.3
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 2.4e-49 199.9 227 54.6
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 3.5e-48 196.1 144 72.2
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 8.6e-47 191.4 231 52.8
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 8.6e-47 191.4 264 53.0
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 1.1e-46 191.0 175 61.7
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 5.6e-46 188.7 170 62.4
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 2.1e-45 186.8 234 50.9
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 1.4e-44 184.1 221 49.8
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 1.8e-44 183.7 236 47.0
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 3.1e-44 183.0 225 49.3
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 3.1e-44 183.0 171 57.3
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 1.5e-43 180.6 243 47.3
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.5e-43 180.6 171 58.5
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 4.4e-43 179.1 260 50.8
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 5.8e-43 178.7 217 53.0
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 1.7e-42 177.2 145 69.0
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 1.1e-41 174.5 120 75.8
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 2.4e-41 173.3 178 57.3
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 8.6e-39 164.9 190 52.6
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 3.3e-38 162.9 180 55.0
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 1.2e-35 154.5 221 45.2
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 2.9e-34 149.8 156 53.8
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 3.7e-34 149.4 148 52.0
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 1.0e-31 141.4 121 65.3
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 6.6e-31 138.7 133 58.6
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 1.2e-29 134.4 111 64.9
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 7.6e-27 125.2 104 62.5
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 4.6e-24 115.9 260 37.3
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 8.6e-23 111.7 112 53.6
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 7.6e-19 98.6 224 32.1
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 1.7e-18 97.4 168 41.1
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 4.9e-18 95.9 84 63.1
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.4e-17 93.6 97 56.7
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 5.4e-17 92.4 66 74.2
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 1.2e-16 91.3 204 34.3
FvH4_3g30180 Fragaria vesca HOM05D002282 ORTHO05D045693 3.5e-16 89.7 86 76.7
FAN11G2064 Fragaria x ananassa HOM05D002282 ORTHO05D045693 3.5e-16 89.7 86 76.7
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 1.9e-14 84.0 62 80.6
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 1.4e-12 77.8 238 30.3
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 3.1e-12 76.6 62 59.7
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 1.4e-09 67.8 195 29.2
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 1.9e-09 67.4 226 31.4
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 4.6e-08 62.8 155 32.3
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 4.6e-08 62.8 89 49.4
arahy.Tifrunner.gnm1.ann1.3PI56D Arachis hypogaea HOM05D002282 ORTHO05D002403 6.6e-07 58.9 205 25.9
PRCOL_00005222 Prasinoderma coloniale HOM05D002282 ORTHO05D002403 8.7e-07 58.5 115 32.2
arahy.Tifrunner.gnm1.ann1.C0TKG5 Arachis hypogaea HOM05D002282 ORTHO05D002403 1.9e-06 57.4 201 25.4
Sed0017061 Sechium edule HOM05D002282 ORTHO05D002403 1.9e-06 57.4 123 38.2
TPR.G4827 Trifolium pratense HOM05D002282 ORTHO05D002403 1.9e-06 57.4 135 32.6
ClCG06G004860 Citrullus lanatus HOM05D002282 ORTHO05D002403 2.5e-06 57.0 89 40.4
GSVIVG01035079001 Vitis vinifera HOM05D002282 ORTHO05D002403 4.3e-06 56.2 135 31.1
CsaV3_6G022650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 7.3e-06 55.5 89 38.2
RcHm_v2.0_Chr4g0423831 Rosa chinensis HOM05D002282 ORTHO05D002403 7.3e-06 55.5 121 30.6


User provided reference genes

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