Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 2.9e-65 251.9 143 100.0
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.4e-46 189.9 143 81.1
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 2.0e-45 186.0 143 79.7
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 3.1e-43 178.7 143 79.0
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 7.0e-43 177.6 143 81.8
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 7.0e-43 177.6 143 81.8
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 1.7e-33 146.4 114 83.3
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 2.3e-30 136.0 158 65.2
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 1.2e-29 133.7 160 61.2
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 1.2e-26 123.6 155 59.4
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 3.5e-26 122.1 158 53.2
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 1.3e-25 120.2 133 60.9
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 3.3e-24 115.5 115 65.2
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 2.1e-23 112.8 151 51.0
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 3.1e-22 109.0 110 61.8
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 5.2e-22 108.2 152 50.7
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 1.2e-21 107.1 156 46.2
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 1.5e-21 106.7 160 45.6
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 1.5e-21 106.7 120 62.5
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 2.0e-21 106.3 149 51.0
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 2.6e-21 105.9 156 53.8
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 4.4e-21 105.1 149 51.7
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 2.2e-20 102.8 151 54.3
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 2.9e-20 102.4 156 53.2
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 1.1e-19 100.5 156 47.4
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 2.1e-18 96.3 136 52.9
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 6.0e-18 94.7 145 44.8
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 6.0e-18 94.7 142 50.7
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.0e-17 94.0 144 48.6
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 1.3e-17 93.6 152 44.1
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 3.0e-17 92.4 145 49.0
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 3.9e-17 92.0 150 46.7
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 3.9e-17 92.0 140 50.7
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 5.0e-17 91.7 144 43.8
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.1e-16 90.5 125 55.2
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.5e-16 90.1 146 51.4
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 1.5e-16 90.1 146 51.4
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 1.9e-16 89.7 153 49.7
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 1.6e-15 86.7 152 47.4
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 1.6e-15 86.7 144 50.0
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 3.6e-15 85.5 119 49.6
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 3.1e-14 82.4 113 46.9
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 4.0e-14 82.0 153 47.7
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 4.0e-14 82.0 151 41.7
Haze_20302 Corylus avellana HOM05D005060 ORTHO05D005975 5.2e-14 81.6 119 47.1
QL07p014517 Quercus lobata HOM05D005060 ORTHO05D005975 5.2e-14 81.6 120 44.2
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 6.8e-14 81.3 129 41.1
CANSAT78G0005 Cannabis sativa HOM05D005060 ORTHO05D005975 8.9e-14 80.9 154 48.7
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 2.0e-13 79.7 151 47.0
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 2.0e-13 79.7 135 42.2
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 2.0e-13 79.7 109 54.1
A04p03610 Brassica napus HOM05D005060 ORTHO05D005975 5.8e-13 78.2 148 46.6
CiPaw.09G163900 Carya illinoinensis HOM05D005060 ORTHO05D005975 5.8e-13 78.2 106 43.4
Nn7g37114 Nelumbo nucifera HOM05D005060 ORTHO05D005975 5.8e-13 78.2 146 48.6
SGA_v2.0_scaffold69G23194 Striga asiatica HOM05D005060 ORTHO05D005975 5.8e-13 78.2 138 48.6
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 1.3e-12 77.0 146 47.3
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 1.7e-12 76.6 111 44.1
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 1.7e-12 76.6 146 44.5
BcaC07g40003 Brassica carinata HOM05D005060 ORTHO05D005975 1.7e-12 76.6 148 47.3
C08p32160 Brassica napus HOM05D005060 ORTHO05D005975 1.7e-12 76.6 148 47.3
BolC8t50834H Brassica oleracea HOM05D005060 ORTHO05D005975 1.7e-12 76.6 148 47.3
CiPaw.10G123900 Carya illinoinensis HOM05D005060 ORTHO05D005975 1.7e-12 76.6 113 57.5
Glyma.03G120300 Glycine max HOM05D005060 ORTHO05D005975 1.7e-12 76.6 147 44.2
Potri.006G029500 Populus trichocarpa HOM05D005060 ORTHO05D005975 1.7e-12 76.6 108 49.1
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 2.2e-12 76.3 144 41.0
BcaC02g09878 Brassica carinata HOM05D005060 ORTHO05D005975 6.4e-12 74.7 151 43.0
A09p49780 Brassica napus HOM05D005060 ORTHO05D005975 6.4e-12 74.7 154 47.4
C04p35630 Brassica napus HOM05D005060 ORTHO05D005975 6.4e-12 74.7 151 43.0
BolC4t25241H Brassica oleracea HOM05D005060 ORTHO05D005975 6.4e-12 74.7 151 43.0
BraA09t40431Z Brassica rapa HOM05D005060 ORTHO05D005975 6.4e-12 74.7 154 47.4
Sp5g05680 Schrenkiella parvula HOM05D005060 ORTHO05D005975 8.3e-12 74.3 152 46.1
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 1.1e-11 73.9 151 45.7
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 1.4e-11 73.6 101 47.5
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 1.4e-11 73.6 110 49.1
A07p23120 Brassica napus HOM05D005060 ORTHO05D005975 1.9e-11 73.2 143 46.2
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 1.9e-11 73.2 153 45.8
Ah.13g077380 Amaranthus hybridus HOM05D005060 ORTHO05D005975 2.4e-11 72.8 109 47.7
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 2.4e-11 72.8 91 52.7
Migut.J01559 Erythranthe guttata HOM05D005060 ORTHO05D005975 3.2e-11 72.4 150 42.7
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 7.1e-11 71.2 150 36.0
ECA236G1981 Erigeron canadensis HOM05D005060 ORTHO05D005975 9.2e-11 70.9 128 43.8
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 1.2e-10 70.5 147 40.8
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 1.6e-10 70.1 130 41.5
MBI19_g25016_MAGBIO Magnolia biondii HOM05D005060 ORTHO05D005975 1.6e-10 70.1 110 47.3
BraA07t29972Z Brassica rapa HOM05D000531 ORTHO05D001630 2.1e-10 69.7 147 43.5
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 2.1e-10 69.7 145 39.3
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 2.1e-10 69.7 150 35.3
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 2.1e-10 69.7 90 56.7
TAR369G0553 Trochodendron aralioides HOM05D005060 ORTHO05D005975 2.7e-10 69.3 148 43.9
Manes.08G066600 Manihot esculenta HOM05D005060 ORTHO05D005975 3.5e-10 68.9 134 38.1
MSTRG.6293 Avicennia marina HOM05D005060 ORTHO05D005975 6.0e-10 68.2 151 41.1
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 6.0e-10 68.2 150 34.7
EL10Ac3g07347 Beta vulgaris HOM05D005060 ORTHO05D005975 1.3e-09 67.0 120 45.8
Duzib128G1851 Durio zibethinus HOM05D005060 ORTHO05D005975 1.3e-09 67.0 116 47.4
Psat3g082360 Pisum sativum HOM05D005060 ORTHO05D005975 1.7e-09 66.6 152 45.4
Hma1.2p1_0031F.1_g018400 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 3.0e-09 65.9 151 41.1
Hma1.2p1_2089F.1_g313840 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 3.0e-09 65.9 151 41.1
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 3.0e-09 65.9 148 38.5
AL5G38310 Arabidopsis lyrata HOM05D005060 ORTHO05D005975 5.1e-09 65.1 152 41.4
Cpa.g.sc33.198 Carica papaya HOM05D005060 ORTHO05D005975 5.1e-09 65.1 150 42.0
Aqoxy1G00045 Aquilegia oxysepala HOM05D005060 ORTHO05D005975 6.6e-09 64.7 127 44.1
Manes.13G072000 Manihot esculenta HOM05D005060 ORTHO05D005975 1.1e-08 63.9 124 46.8
Sabra06G0020700 Salix brachista HOM05D005060 ORTHO05D005975 1.1e-08 63.9 105 47.6
Oeu023007.1 Olea europaea HOM05D005060 ORTHO05D005975 1.5e-08 63.5 152 40.8
QL07p014521 Quercus lobata HOM05D005060 ORTHO05D005975 1.5e-08 63.5 152 41.4
Carub.0005s2365 Capsella rubella HOM05D005060 ORTHO05D005975 1.9e-08 63.2 153 43.1
DCAR_009091 Daucus carota HOM05D005060 ORTHO05D005975 2.5e-08 62.8 96 53.1
BcaB02g08343 Brassica carinata HOM05D005060 ORTHO05D005975 5.6e-08 61.6 149 43.6
Peaxi162Scf00153g01321 Petunia axillaris HOM05D005060 ORTHO05D005975 1.2e-07 60.5 113 43.4
Potri.006G028500 Populus trichocarpa HOM05D005060 ORTHO05D005975 1.6e-07 60.1 104 39.4
VMungo0331G0467 Vigna mungo HOM05D005060 ORTHO05D005975 1.6e-07 60.1 133 42.1
CDE02G1443 Ceratophyllum demersum HOM05D005060 ORTHO05D005975 2.1e-07 59.7 143 40.6
Cc06_g22810 Coffea canephora HOM05D005060 ORTHO05D005975 3.6e-07 58.9 115 43.5
PSO339G2385 Papaver somniferum HOM05D005060 ORTHO05D005975 6.2e-07 58.2 154 35.1
PSO384G0259 Papaver somniferum HOM05D005060 ORTHO05D005975 6.2e-07 58.2 153 36.6
Sopen10g028770 Solanum pennellii HOM05D005060 ORTHO05D005975 6.2e-07 58.2 143 38.5
ATR0787G086 Amborella trichopoda HOM05D005060 ORTHO05D005975 8.1e-07 57.8 119 47.1
PGSC0003DMG400007184 Solanum tuberosum HOM05D005060 ORTHO05D005975 8.1e-07 57.8 134 38.8
CSS0016899 Camellia sinensis var. sinensis HOM05D005060 ORTHO05D005975 1.4e-06 57.0 137 38.0
Actinidia05489 Actinidia chinensis HOM05D005060 ORTHO05D005975 3.1e-06 55.8 44 70.5
CAN.G959.26 Capsicum annuum HOM05D005060 ORTHO05D005975 3.1e-06 55.8 123 39.8
AUR62020993 Chenopodium quinoa HOM05D005060 ORTHO05D005975 5.2e-06 55.1 112 42.9
Hund24512 Selenicereus undatus HOM05D005060 ORTHO05D005975 5.2e-06 55.1 148 39.9
Ciclev10013042m.g Citrus clementina HOM05D005060 ORTHO05D005975 6.8e-06 54.7 151 43.7
Nitab4.5_0001270g0130 Nicotiana tabacum HOM05D005060 ORTHO05D005975 6.8e-06 54.7 126 39.7


User provided reference genes

Program Settings