Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 1.9e-108 396.0 219 100.0
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 6.4e-96 354.4 219 87.2
FAN06G2149 Fragaria x ananassa HOM05D006789 ORTHO05D008460 3.5e-94 348.6 224 84.4
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 1.9e-84 316.2 222 81.5
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 3.4e-81 305.4 225 72.0
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 9.9e-81 303.9 223 72.6
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 6.4e-80 301.2 221 78.7
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 1.5e-76 290.0 218 68.3
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 2.4e-74 282.7 223 67.3
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 4.0e-74 282.0 223 67.3
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 5.3e-74 281.6 223 66.8
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 9.0e-74 280.8 223 70.0
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 5.8e-73 278.1 219 68.5
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 1.9e-71 273.1 219 65.8
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 2.4e-71 272.7 219 65.8
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 3.2e-71 272.3 218 65.6
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 3.2e-71 272.3 217 65.9
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 7.1e-71 271.2 189 71.4
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 1.6e-70 270.0 224 64.3
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 7.9e-70 267.7 219 65.3
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 3.9e-69 265.4 217 64.5
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 5.1e-69 265.0 219 65.3
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 5.1e-69 265.0 192 70.3
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 6.7e-69 264.6 217 64.5
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 6.7e-69 264.6 217 64.5
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.5e-68 263.5 219 64.4
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 1.9e-68 263.1 220 62.3
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 3.3e-68 262.3 218 61.0
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 5.6e-68 261.5 217 64.5
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 7.4e-68 261.2 246 58.9
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 9.6e-68 260.8 218 60.6
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 9.6e-68 260.8 218 60.6
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 1.3e-67 260.4 219 63.0
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 1.6e-67 260.0 219 63.0
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 2.1e-67 259.6 218 60.6
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 2.1e-67 259.6 218 60.6
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 2.1e-67 259.6 208 64.4
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 4.8e-67 258.5 217 65.9
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 6.2e-67 258.1 217 64.1
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 1.8e-66 256.5 218 61.0
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 2.4e-66 256.1 172 76.7
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 3.1e-66 255.8 220 62.3
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 4.0e-66 255.4 233 60.5
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 6.9e-66 254.6 183 71.0
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 6.9e-66 254.6 241 58.5
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 1.5e-65 253.4 224 58.5
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 1.5e-65 253.4 218 59.6
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 2.0e-65 253.1 217 62.2
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 2.0e-65 253.1 219 60.3
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 2.6e-65 252.7 229 60.3
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 2.6e-65 252.7 183 71.0
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 1.0e-64 250.8 183 69.4
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 1.3e-64 250.4 219 60.7
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 2.2e-64 249.6 218 61.5
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 2.9e-64 249.2 222 58.1
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 4.9e-64 248.4 224 59.4
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 1.1e-63 247.3 216 60.6
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 1.9e-63 246.5 216 59.7
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 1.9e-63 246.5 188 67.6
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 2.5e-63 246.1 217 62.2
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 5.5e-63 245.0 219 59.8
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 7.1e-63 244.6 160 76.9
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.6e-62 243.4 160 76.2
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 1.6e-62 243.4 218 60.1
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 2.1e-62 243.0 160 75.6
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 6.0e-62 241.5 174 72.4
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 7.9e-62 241.1 183 66.7
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 6.7e-61 238.0 226 57.5
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 8.7e-61 237.7 224 58.5
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 1.1e-60 237.3 217 59.4
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 1.5e-60 236.9 215 60.0
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 1.5e-60 236.9 187 65.2
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 1.5e-60 236.9 183 65.6
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 2.5e-60 236.1 226 56.2
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 5.7e-60 235.0 188 61.7
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 9.6e-60 234.2 187 64.7
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 3.7e-59 232.3 148 77.7
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 4.8e-59 231.9 292 47.3
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 6.3e-59 231.5 209 59.3
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 8.2e-59 231.1 184 64.1
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.1e-58 230.7 157 74.5
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 6.9e-58 228.0 149 75.8
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 4.5e-57 225.3 188 60.1
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 1.9e-55 219.9 148 73.0
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 2.5e-55 219.5 190 60.0
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 4.2e-55 218.8 190 61.1
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 1.2e-54 217.2 162 68.5
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 7.9e-54 214.5 180 61.7
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 1.3e-53 213.8 157 69.4
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 1.8e-53 213.4 219 53.4
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 5.1e-53 211.8 170 63.5
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 2.5e-52 209.5 157 68.8
Sed0010043 Sechium edule HOM05D006789 ORTHO05D008460 5.7e-52 208.4 186 60.2
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 1.4e-50 203.8 149 65.8
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 1.3e-48 197.2 148 65.5
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 5.0e-48 195.3 159 59.7
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 7.9e-46 188.0 185 54.6
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 3.9e-45 185.7 122 77.0
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 8.2e-43 177.9 147 61.9
AUR62014306 Chenopodium quinoa HOM05D006789 ORTHO05D008460 1.1e-39 167.5 190 51.6
Gorai.010G208600 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.4e-37 160.6 146 61.6
Pp3c10_8520 Physcomitrium patens HOM05D006789 ORTHO05D008460 3.0e-37 159.5 186 47.3
Actinidia29655 Actinidia chinensis HOM05D006789 ORTHO05D008460 3.9e-37 159.1 208 49.5
CARHR208350 Cardamine hirsuta HOM05D006789 ORTHO05D008460 7.0e-34 148.3 90 76.7
SMO364G0543 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 3.6e-30 136.0 184 47.3
Mapoly0023s0087 Marchantia polymorpha HOM05D006789 ORTHO05D008460 1.4e-29 134.0 190 43.2
TAR633G1630 Trochodendron aralioides HOM05D006789 ORTHO05D008460 2.3e-29 133.3 81 79.0
TAR629G1007 Trochodendron aralioides HOM05D001508 ORTHO05D008460 6.7e-29 131.7 79 79.7
Cfa010449 Carpinus fangiana HOM05D006789 ORTHO05D008460 9.7e-28 127.9 132 53.0
Ca_14025_v3 Cicer arietinum L. HOM05D006789 ORTHO05D008460 3.5e-25 119.4 127 52.8
SMO353G0288 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 1.0e-24 117.9 175 45.1
TAR636G3403 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.4e-21 107.5 72 72.2
BcaB03g15210 Brassica carinata HOM05D006789 ORTHO05D008460 1.7e-19 100.5 65 67.7
Cfa005731 Carpinus fangiana HOM05D012552 ORTHO05D018926 4.5e-17 92.4 68 64.7
CBR_g54451 Chara braunii HOM05D003248 ORTHO05D000301 6.5e-16 88.6 244 29.9
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 1.6e-14 84.0 76 59.2
Phvul.005G010900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 1.3e-11 74.3 99 48.5
AUR62034099 Chenopodium quinoa HOM05D006789 ORTHO05D008460 1.1e-10 71.2 59 61.0
Cre16.g683483 Chlamydomonas reinhardtii HOM05D006789 ORTHO05D008460 1.8e-10 70.5 100 43.0
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 7.0e-10 68.6 66 50.0
SHI21242 Sapria himalayana HOM05D006789 ORTHO05D008460 3.8e-08 62.8 66 54.5
Cfa010304 Carpinus fangiana HOM05D012552 ORTHO05D018926 7.3e-07 58.5 87 46.0
MCO03G486 Micromonas commoda HOM05D006789 ORTHO05D008460 7.3e-07 58.5 235 25.5


User provided reference genes

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