Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 4.7e-310 1067.0 538 100.0
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 2.6e-263 911.8 530 87.2
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 6.3e-262 907.1 530 87.0
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 5.9e-260 900.6 530 86.6
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 5.2e-256 887.5 530 85.7
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 8.6e-219 763.8 554 71.1
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 9.2e-205 717.2 553 67.5
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 1.9e-189 666.4 557 63.6
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 3.1e-184 649.0 493 66.3
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 1.9e-181 639.8 422 72.5
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 4.2e-181 638.6 479 66.0
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 5.4e-181 638.3 516 63.2
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 1.0e-179 634.0 539 59.9
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 1.3e-179 633.6 481 65.1
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 2.8e-177 625.9 460 65.7
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 4.8e-177 625.2 418 70.1
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 4.0e-176 622.1 464 64.7
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 9.0e-176 620.9 517 61.3
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 1.0e-174 617.5 474 64.8
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 1.9e-173 613.2 473 64.5
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 1.9e-173 613.2 520 59.8
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 2.5e-173 612.8 544 59.0
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 2.5e-173 612.8 476 63.4
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 2.5e-173 612.8 537 56.4
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 4.2e-173 612.1 494 62.1
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 1.2e-172 610.5 534 58.6
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 1.6e-172 610.1 422 70.1
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 2.1e-172 609.8 474 63.7
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 2.1e-172 609.8 534 58.1
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 2.7e-172 609.4 477 64.8
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 2.7e-172 609.4 531 58.8
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 7.9e-172 607.8 530 60.4
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 3.9e-171 605.5 466 63.1
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 5.1e-171 605.1 476 62.6
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 6.7e-171 604.7 419 67.3
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 6.7e-171 604.7 533 58.5
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 1.6e-169 600.1 423 68.1
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 3.1e-168 595.9 455 62.4
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 6.9e-168 594.7 438 63.7
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 5.0e-166 588.6 412 67.5
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 7.1e-165 584.7 408 67.6
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 1.6e-164 583.6 517 57.8
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 7.9e-164 581.3 423 65.2
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 5.3e-160 568.5 470 60.9
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 5.0e-158 562.0 518 54.8
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 5.5e-157 558.5 429 64.6
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 7.2e-157 558.1 420 64.0
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 2.7e-156 556.2 504 55.2
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 3.6e-156 555.8 466 58.8
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 4.6e-156 555.4 392 65.3
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 3.0e-155 552.7 491 56.6
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 3.9e-155 552.4 485 57.7
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 6.7e-155 551.6 426 60.6
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 8.8e-155 551.2 476 55.0
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 1.1e-154 550.8 392 64.5
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 2.5e-154 549.7 478 57.1
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 3.3e-154 549.3 413 63.2
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 7.4e-154 548.1 484 56.4
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 2.2e-153 546.6 478 57.7
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 2.2e-153 546.6 487 57.7
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 2.2e-153 546.6 417 61.2
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 2.8e-153 546.2 478 57.5
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 2.8e-153 546.2 476 54.6
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 4.8e-153 545.4 483 57.8
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 4.8e-153 545.4 474 58.0
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 6.3e-153 545.0 474 56.8
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 8.2e-153 544.7 502 55.2
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 1.4e-152 543.9 461 58.8
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 1.8e-152 543.5 518 53.9
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 2.4e-152 543.1 483 57.1
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 6.9e-152 541.6 475 56.8
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 1.2e-151 540.8 508 55.5
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 1.0e-150 537.7 483 57.1
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 1.0e-150 537.7 474 56.1
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 1.3e-150 537.3 420 62.6
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 3.8e-150 535.8 478 54.8
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 2.7e-148 529.6 464 56.5
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 7.9e-148 528.1 515 51.8
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 2.0e-146 523.5 528 51.1
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 2.0e-143 513.5 461 54.2
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 1.1e-133 481.1 361 60.1
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 2.3e-131 473.4 444 52.9
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 3.8e-126 456.1 297 73.1
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 1.9e-125 453.8 290 72.1
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 2.1e-124 450.3 310 68.1
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 5.2e-115 419.1 452 44.2
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 6.3e-113 412.1 421 47.5
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 1.4e-112 411.0 420 47.1
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 1.4e-112 411.0 387 48.8
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 7.8e-111 405.2 288 66.3
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 1.2e-106 391.3 290 63.4
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 2.4e-104 383.6 484 44.6
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 2.0e-103 380.6 292 62.3
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 8.3e-97 358.6 536 40.7
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.6e-95 354.4 265 68.3
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 1.7e-94 350.9 235 69.8
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 4.3e-93 346.3 232 71.1
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 1.8e-91 340.9 469 41.4
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 2.3e-91 340.5 358 47.5
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 4.0e-91 339.7 217 69.6
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 5.8e-90 335.9 359 46.2
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 7.3e-85 318.9 250 66.8
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 2.1e-71 274.2 293 52.9
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 2.2e-65 254.2 542 33.9
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 3.2e-64 250.4 165 68.5
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 1.4e-59 235.0 345 37.7
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 3.9e-46 190.3 283 34.6
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 9.0e-43 179.1 250 44.4
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 1.5e-42 178.3 174 53.4
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 2.6e-42 177.6 185 52.4
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 7.7e-42 176.0 510 28.8
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 2.7e-39 167.5 103 77.7
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 3.6e-39 167.2 226 43.4
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 4.6e-39 166.8 428 30.6
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 1.9e-32 144.8 102 68.6
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 3.6e-31 140.6 232 38.8
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 7.9e-31 139.4 323 33.1
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 3.5e-26 124.0 91 67.0
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 5.0e-25 120.2 122 46.7
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 1.1e-19 102.4 98 53.1
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 3.2e-16 90.9 62 66.1
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 1.6e-15 88.6 83 57.8
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 8.5e-09 66.2 35 68.6
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.2e-08 64.3 41 65.9


User provided reference genes

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