Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 4.7e-106 387.9 197 100.0
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 3.3e-51 205.7 108 96.3
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 6.2e-50 201.4 108 94.4
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.2e-50 201.4 108 94.4
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.2e-50 201.4 108 94.4
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.2e-50 201.4 108 94.4
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 8.1e-50 201.1 108 94.4
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.1e-49 200.7 108 93.5
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.2e-45 187.2 102 92.2
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 1.3e-44 183.7 116 79.3
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 1.3e-44 183.7 116 79.3
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.0e-44 182.6 108 82.4
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 3.0e-44 182.6 135 69.6
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.9e-43 179.9 108 80.6
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 9.6e-43 177.6 109 85.3
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.6e-42 176.8 108 80.6
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 2.4e-41 172.9 108 76.9
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 5.3e-41 171.8 108 77.8
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 5.3e-41 171.8 108 79.6
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 5.3e-41 171.8 108 75.9
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 9.0e-41 171.0 108 75.9
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.5e-40 170.2 108 76.9
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 2.0e-40 169.9 108 78.7
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 2.6e-40 169.5 108 77.8
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 5.8e-40 168.3 108 77.8
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 1.0e-39 167.5 108 77.8
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.3e-39 167.2 109 74.3
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.7e-39 166.8 108 75.0
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.0e-39 165.2 108 73.1
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 6.5e-39 164.9 108 75.9
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.4e-38 163.7 116 69.0
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.9e-38 163.3 108 75.0
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.9e-38 163.3 116 68.1
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.5e-38 162.9 116 68.1
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 2.5e-38 162.9 116 68.1
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 2.5e-38 162.9 112 68.8
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 3.2e-38 162.5 108 71.3
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 4.2e-38 162.2 120 64.2
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.2e-38 162.2 108 72.2
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 5.5e-38 161.8 108 71.3
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 5.5e-38 161.8 108 71.3
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 5.5e-38 161.8 108 75.0
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 5.5e-38 161.8 122 69.7
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 7.1e-38 161.4 116 68.1
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.2e-37 160.6 108 71.3
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.6e-37 160.2 108 70.4
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 2.1e-37 159.8 108 73.1
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.5e-37 159.1 108 71.3
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 4.6e-37 158.7 108 70.4
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 4.6e-37 158.7 108 70.4
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 6.1e-37 158.3 108 72.2
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.0e-36 157.5 108 71.3
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.0e-36 157.5 108 71.3
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.0e-36 157.5 108 70.4
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.8e-36 156.8 108 69.4
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.3e-36 156.4 108 73.1
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 3.0e-36 156.0 108 74.1
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 3.0e-36 156.0 108 65.7
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 5.1e-36 155.2 108 68.5
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 6.7e-36 154.8 108 64.8
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.9e-35 153.3 159 52.8
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.9e-35 153.3 108 71.3
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 2.5e-35 152.9 108 70.4
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 2.5e-35 152.9 108 69.4
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 3.3e-35 152.5 108 70.4
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 5.7e-35 151.8 109 65.1
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 7.4e-35 151.4 120 63.3
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 9.7e-35 151.0 108 70.4
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 9.7e-35 151.0 108 70.4
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.3e-34 150.6 108 69.4
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 2.8e-34 149.4 108 63.9
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.8e-34 149.4 109 66.1
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 3.7e-34 149.1 109 66.1
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 3.7e-34 149.1 108 66.7
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 6.3e-34 148.3 108 68.5
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.1e-33 147.5 109 65.1
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.1e-33 147.5 108 66.7
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.4e-33 147.1 120 62.5
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 3.1e-33 146.0 109 65.1
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 4.1e-33 145.6 121 61.2
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 5.3e-33 145.2 108 67.6
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 6.9e-33 144.8 108 64.8
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 9.0e-33 144.4 121 60.3
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 9.0e-33 144.4 109 63.3
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.5e-32 143.7 108 65.7
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.5e-32 143.7 108 65.7
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.6e-32 142.9 120 60.8
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 4.5e-32 142.1 120 60.8
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 7.7e-32 141.4 108 65.7
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 6.5e-31 138.3 108 65.7
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 8.5e-31 137.9 108 62.0
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.4e-30 137.1 128 55.5
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 2.5e-30 136.3 108 62.0
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 7.2e-30 134.8 121 55.4
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.6e-29 133.7 129 57.4
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 2.1e-29 133.3 108 59.3
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 1.8e-28 130.2 120 56.7
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.7e-26 122.5 145 47.6
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 4.8e-26 122.1 108 56.5
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 4.8e-26 122.1 108 56.5
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 4.8e-26 122.1 108 56.5
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 6.3e-26 121.7 108 56.5
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 6.3e-26 121.7 108 56.5
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 6.3e-26 121.7 107 57.9
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.1e-25 120.9 108 59.3
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.4e-25 120.6 109 56.9
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.4e-25 120.6 109 56.9
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 5.3e-25 118.6 108 60.2
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 9.1e-25 117.9 108 53.7
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 9.1e-25 117.9 107 57.0
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 7.7e-24 114.8 109 54.1
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.7e-21 105.5 109 56.0
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.4e-20 104.0 109 52.3
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 6.7e-20 101.7 121 43.0
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 6.3e-18 95.1 116 46.6
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 4.1e-17 92.4 99 45.5
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 4.1e-17 92.4 99 45.5
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.5e-16 90.5 70 62.9
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.3e-15 87.4 58 70.7
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.7e-15 87.0 58 67.2
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.5e-14 84.0 61 60.7
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 2.5e-14 83.2 97 41.2
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 3.6e-13 79.3 101 40.6
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 1.4e-12 77.4 99 39.4
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 2.3e-12 76.6 50 70.0
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 6.7e-12 75.1 41 85.4
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 2.0e-11 73.6 41 85.4
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 6.3e-10 68.6 44 70.5
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 7.0e-09 65.1 41 70.7
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 2.0e-08 63.5 40 70.0
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 8.5e-07 58.2 41 63.4
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 3.2e-06 56.2 53 52.8


User provided reference genes

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