Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1731.5 887 100.0
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1676.0 887 96.7
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1553.9 879 90.3
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1545.8 879 89.8
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1504.6 879 88.1
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1501.9 879 87.8
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 0.0e+00 1484.9 832 90.4
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 0.0e+00 1427.5 896 83.7
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 0.0e+00 1279.2 889 74.7
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1258.0 662 95.9
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 0.0e+00 1206.8 927 70.7
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 0.0e+00 1144.8 944 65.3
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 0.0e+00 1098.2 879 64.5
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 0.0e+00 1094.3 877 65.1
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 0.0e+00 1077.8 875 63.7
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 3.0e-311 1071.6 888 62.6
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 2.6e-305 1052.0 883 63.5
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 2.4e-298 1028.9 880 61.5
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.4e-295 1018.8 881 60.6
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 6.0e-294 1014.2 881 60.5
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.8e-293 1012.7 853 62.0
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 8.7e-293 1010.4 888 61.3
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.4e-290 1002.3 889 60.0
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 5.8e-289 997.7 882 60.3
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 2.9e-288 995.3 878 61.5
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.2e-286 989.9 878 59.1
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.0e-285 986.9 878 58.9
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.1e-285 984.6 878 58.8
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 4.3e-284 981.5 922 57.4
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 2.1e-283 979.2 872 58.8
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 5.8e-281 971.1 880 58.1
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 7.6e-281 970.7 890 57.4
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 1.7e-280 969.5 879 59.5
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 5.5e-279 964.5 746 66.8
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 1.2e-278 963.4 899 58.4
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 5.1e-277 958.0 879 58.9
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 2.3e-269 932.6 931 56.0
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 3.0e-269 932.2 889 55.5
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.8e-266 922.9 742 64.3
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.6e-265 919.1 884 55.7
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.3e-264 916.8 881 55.7
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 6.5e-264 914.4 877 55.6
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 8.5e-264 914.1 883 55.7
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 7.2e-263 911.0 883 55.4
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 6.1e-262 907.9 850 58.2
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 2.0e-260 902.9 864 55.6
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 7.0e-258 894.4 879 54.2
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.5e-257 893.3 876 54.5
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.3e-253 879.4 879 54.3
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 2.8e-251 872.5 882 53.7
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 1.1e-250 870.5 882 53.6
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 1.4e-250 870.2 874 54.5
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 7.0e-250 867.8 874 53.4
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 7.7e-249 864.4 861 53.7
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 3.8e-248 862.1 728 61.7
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 4.2e-247 858.6 860 54.2
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 3.6e-246 855.5 879 52.3
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 8.0e-246 854.4 891 52.6
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 5.9e-241 838.2 884 50.6
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 7.7e-241 837.8 878 51.7
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.8e-237 826.6 884 50.2
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 5.2e-237 825.1 882 50.5
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 3.7e-235 818.9 889 49.5
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 6.3e-235 818.1 881 49.9
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.6e-233 813.5 905 50.5
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 3.3e-231 805.8 695 60.3
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 2.1e-230 803.1 875 49.9
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.8e-229 800.0 893 48.9
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 3.4e-228 795.8 947 47.9
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 4.9e-227 792.0 886 49.5
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 1.4e-226 790.4 882 49.7
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.0e-224 784.3 853 51.2
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.0e-224 784.3 881 50.6
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.1e-223 780.8 880 48.6
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 9.5e-223 777.7 910 48.0
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 8.0e-222 774.6 694 59.1
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.0e-220 770.0 727 55.3
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 2.6e-220 769.6 884 48.0
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 7.0e-218 761.5 884 49.0
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 9.2e-218 761.1 648 62.0
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 3.9e-216 755.7 890 47.6
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.1e-215 754.2 887 47.6
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 7.3e-215 751.5 886 47.2
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 9.5e-215 751.1 886 47.4
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 2.1e-214 750.0 891 47.6
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 6.2e-214 748.4 886 47.3
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 6.2e-214 748.4 886 47.0
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 3.1e-213 746.1 889 47.9
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 9.8e-212 741.1 886 46.8
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 3.5e-209 732.6 888 47.2
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.0e-208 731.1 905 46.4
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.0e-208 731.1 708 56.1
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.1e-207 727.6 885 47.2
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.2e-203 713.4 848 48.3
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 2.2e-203 713.4 828 48.6
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 8.9e-197 691.4 890 46.7
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 4.9e-195 685.6 628 56.2
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 2.4e-194 683.3 700 54.3
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 4.2e-194 682.6 924 43.6
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 4.2e-194 682.6 894 45.0
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.7e-192 677.2 888 45.2
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 1.4e-189 667.5 821 46.8
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 2.7e-169 600.1 699 46.4
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.7e-168 595.1 703 49.4
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 7.1e-162 575.5 885 40.1
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 1.0e-155 555.1 551 54.8
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 3.3e-151 540.0 637 45.4
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.7e-150 537.7 748 42.1
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 1.5e-148 531.2 782 41.9
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 6.5e-147 525.8 914 39.8
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 8.0e-137 492.3 893 36.1
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 8.5e-131 472.2 692 40.5
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.0e-128 465.3 559 45.6
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 5.4e-109 399.8 754 36.9
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 3.6e-105 387.1 261 75.5
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 2.0e-100 371.3 607 36.7
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 4.7e-97 360.1 810 32.6
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 8.9e-96 355.9 954 29.9
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 8.9e-96 355.9 954 29.9
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 4.4e-95 353.6 979 29.6
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 9.8e-95 352.4 240 77.1
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.3e-94 349.4 242 74.4
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 5.6e-90 336.7 554 40.4
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 7.8e-84 316.2 236 69.1
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.8e-80 305.1 737 30.1
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 3.5e-76 290.8 531 34.5
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 6.9e-72 276.6 192 75.5
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 4.4e-71 273.9 193 73.6
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 5.8e-71 273.5 199 67.8
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 3.2e-69 267.7 193 69.4
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 4.9e-62 243.8 338 42.0
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 8.4e-62 243.0 350 38.3
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.1e-61 242.7 188 63.3
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.2e-60 239.2 201 58.7
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 1.4e-56 225.7 756 27.1
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.1e-53 216.1 283 44.2
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.5e-53 213.8 201 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 4.3e-50 204.1 324 38.9
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 6.3e-49 200.3 234 47.0
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.1e-48 199.5 108 93.5
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.8e-48 198.7 138 74.6
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 2.8e-41 174.9 188 49.5
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.5e-39 167.5 215 43.3
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 8.5e-38 163.3 142 60.6
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 9.4e-37 159.8 174 49.4
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 3.6e-36 157.9 217 38.7
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.4e-34 151.0 222 41.9
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 9.7e-34 149.8 184 44.6
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 3.0e-27 128.3 84 79.8
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 6.7e-27 127.1 374 28.9
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 1.7e-25 122.5 434 27.4
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 2.2e-25 122.1 94 61.7
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 1.4e-24 119.4 93 60.2
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 2.0e-23 115.5 93 66.7
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 7.2e-21 107.1 111 49.5
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.6e-20 105.9 100 55.0
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 2.7e-20 105.1 202 35.6
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 2.7e-20 105.1 185 36.8
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 2.8e-17 95.1 170 37.1
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 5.3e-16 90.9 114 41.2
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.0e-11 76.6 50 70.0
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 9.8e-10 70.1 76 47.4
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.7e-07 62.0 88 37.5


User provided reference genes

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