Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 2.4e-212 741.9 366 100.0
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.0e-207 726.5 366 98.4
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 2.0e-182 642.5 366 88.0
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.4e-182 641.7 366 87.7
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.8e-181 638.6 367 87.5
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.1e-177 626.7 397 80.9
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.7e-176 622.1 397 80.6
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.7e-176 622.1 397 80.6
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 3.2e-140 502.3 364 72.8
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 3.1e-135 485.7 365 68.2
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.6e-131 473.4 367 67.8
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 6.9e-111 404.8 368 59.2
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.7e-109 400.2 367 59.9
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 8.4e-109 397.9 372 59.1
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 3.2e-108 396.0 368 59.0
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 5.5e-108 395.2 371 59.0
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 5.5e-108 395.2 363 58.7
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 7.1e-108 394.8 373 57.4
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 2.7e-107 392.9 368 59.0
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 5.1e-106 388.7 366 59.0
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.5e-105 386.3 382 55.2
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 3.3e-105 386.0 357 59.1
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 5.7e-105 385.2 366 57.9
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.8e-104 382.9 366 57.4
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 8.2e-104 381.3 367 58.9
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 4.1e-103 379.0 366 55.2
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 9.0e-103 377.9 364 56.9
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.0e-102 376.7 387 54.5
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 4.5e-102 375.6 374 56.7
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 2.9e-101 372.9 363 57.3
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 2.9e-101 372.9 373 56.3
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.9e-101 372.9 368 55.7
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 7.2e-100 368.2 364 56.0
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 7.2e-100 368.2 364 56.0
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.2e-99 367.5 361 56.0
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.2e-99 367.5 361 56.0
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 2.1e-99 366.7 371 56.1
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 3.6e-99 365.9 373 55.5
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 1.8e-98 363.6 372 54.8
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 3.0e-98 362.8 382 54.7
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 3.0e-98 362.8 382 54.7
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 6.7e-98 361.7 367 55.9
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 5.7e-97 358.6 363 56.2
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 4.8e-96 355.5 370 53.2
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 1.4e-95 354.0 362 54.4
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 5.9e-94 348.6 370 51.6
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 2.9e-93 346.3 361 53.7
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 5.0e-93 345.5 335 55.8
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 1.1e-92 344.4 323 60.4
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.9e-92 343.6 362 52.8
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 1.6e-91 340.5 365 54.0
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.1e-91 340.1 377 53.8
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 6.1e-91 338.6 381 51.7
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.4e-90 337.4 366 51.4
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.0e-89 333.6 366 50.8
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 4.4e-89 332.4 372 53.5
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 7.4e-89 331.6 368 52.2
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 7.4e-89 331.6 335 56.4
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 2.2e-88 330.1 365 50.1
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 2.8e-88 329.7 376 48.9
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 3.7e-88 329.3 366 51.9
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 3.7e-88 329.3 273 61.5
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 3.7e-88 329.3 366 50.8
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 4.1e-87 325.9 360 50.8
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.5e-86 323.9 366 50.0
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 2.6e-86 323.2 372 49.7
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 2.6e-86 323.2 358 52.8
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 3.4e-86 322.8 365 50.7
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 4.5e-86 322.4 380 48.4
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 5.9e-86 322.0 358 50.6
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.0e-85 321.2 286 59.1
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.0e-85 321.2 363 51.2
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.3e-85 320.9 361 51.5
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 2.2e-85 320.1 359 51.5
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 2.2e-85 320.1 358 50.0
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.8e-85 319.3 363 49.9
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 6.5e-85 318.5 362 51.4
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.1e-84 317.8 358 49.7
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 1.4e-84 317.4 365 48.8
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.4e-84 317.4 365 47.1
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 1.4e-84 317.4 357 49.0
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 7.2e-84 315.1 358 50.0
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.7e-83 312.4 363 49.0
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 7.9e-83 311.6 360 50.3
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 2.3e-82 310.1 368 49.5
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.5e-81 307.4 369 50.7
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 4.4e-81 305.8 368 48.4
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 7.4e-81 305.1 365 49.3
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 1.3e-80 304.3 289 54.0
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 1.3e-80 304.3 360 48.6
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.7e-80 303.9 379 47.2
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.7e-80 303.9 362 47.8
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.2e-80 303.5 369 47.4
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 6.3e-80 302.0 266 56.8
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 1.8e-79 300.4 370 48.4
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.8e-79 300.4 369 46.6
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 2.4e-79 300.1 363 50.7
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 2.4e-79 300.1 365 46.0
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 2.0e-78 297.0 358 48.9
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 5.9e-78 295.4 361 48.8
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 7.7e-78 295.0 278 53.6
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 2.2e-77 293.5 272 54.8
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 3.8e-77 292.7 274 56.2
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.8e-77 292.7 413 44.1
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 5.0e-77 292.4 363 46.3
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 6.5e-77 292.0 266 56.4
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.5e-76 290.8 360 48.9
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 3.2e-76 289.7 362 47.2
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 5.5e-76 288.9 367 46.3
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 9.4e-76 288.1 364 47.5
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.2e-75 287.7 361 46.8
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 2.7e-75 286.6 361 46.8
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 4.7e-75 285.8 361 47.1
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.8e-74 283.9 365 44.7
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.8e-74 283.9 359 47.1
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 2.3e-74 283.5 375 46.9
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 3.0e-74 283.1 359 47.6
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 8.8e-74 281.6 360 47.5
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 1.2e-73 281.2 359 47.9
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 4.4e-73 279.3 363 46.6
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 4.4e-73 279.3 359 46.5
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.8e-72 275.8 367 46.0
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 1.8e-71 273.9 359 45.4
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 4.5e-70 269.2 364 46.7
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.5e-68 264.2 358 45.0
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.9e-68 263.8 318 47.8
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.6e-67 260.8 227 57.7
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 2.7e-67 260.0 377 42.4
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.0e-66 256.5 373 41.8
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 4.0e-66 256.1 274 48.9
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 4.0e-66 256.1 274 48.9
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.2e-65 254.6 274 48.9
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.2e-64 250.4 323 45.2
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.2e-62 244.6 322 47.2
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 2.0e-62 243.8 321 45.8
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.0e-62 243.8 321 47.7
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 5.9e-62 242.3 359 44.0
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 7.2e-60 235.3 233 52.4
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 7.2e-60 235.3 258 50.4
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 1.0e-58 231.5 431 35.5
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 2.0e-57 227.3 319 43.6
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 9.2e-55 218.4 357 39.5
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 1.3e-53 214.5 305 42.0
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.5e-49 201.1 215 52.1
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 4.4e-49 199.5 327 38.5
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 2.4e-47 193.7 263 44.5
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 3.2e-47 193.4 319 39.8
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.3e-45 187.2 326 36.5
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.3e-44 183.3 242 42.6
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.1e-42 176.8 184 52.7
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.3e-37 160.6 250 37.6
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 1.9e-36 157.5 214 45.3
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 4.0e-34 149.8 449 28.5
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 6.8e-34 149.1 149 47.0
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 3.4e-33 146.7 147 53.1
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 7.5e-33 145.6 188 46.8
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.1e-31 139.8 156 53.8
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 3.5e-30 136.7 162 50.6
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 4.3e-28 129.8 144 48.6
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.1e-26 125.2 282 30.9
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.3e-24 118.2 161 44.7
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 2.2e-24 117.5 208 39.9
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 1.2e-22 111.7 107 48.6
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.6e-22 111.3 157 40.1
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.0e-21 108.6 202 39.6
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 2.1e-19 100.9 77 55.8
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 3.4e-17 93.6 105 42.9
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 4.9e-16 89.7 421 25.4
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 7.1e-15 85.9 86 47.7
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 9.3e-15 85.5 111 40.5
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.2e-14 85.1 86 46.5
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 6.0e-14 82.8 102 48.0
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 7.8e-14 82.4 96 44.8
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 2.5e-12 77.4 77 49.4
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 3.6e-11 73.6 86 54.7
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 6.2e-11 72.8 132 31.8
Cfa022807 Carpinus fangiana HOM05D003781 ORTHO05D004299 9.0e-10 68.9 321 25.5
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 3.4e-09 67.0 47 66.0
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 7.6e-09 65.9 45 66.7
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 2.2e-08 64.3 40 75.0
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 6.0e-06 56.2 132 34.1
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 6.0e-06 56.2 50 50.0
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 7.9e-06 55.8 107 31.8


User provided reference genes

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