Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0330781 Rosa chinensis HOM05D002889 ORTHO05D003366 6.2e-126 454.1 229 100.0
RcHm_v2.0_Chr6g0285551 Rosa chinensis HOM05D002889 ORTHO05D003366 1.1e-93 347.1 281 67.3
FvH4_2g19850 Fragaria vesca HOM05D002889 ORTHO05D003366 1.3e-91 340.1 281 65.8
FAN24G0698 Fragaria x ananassa HOM05D002889 ORTHO05D003366 1.3e-91 340.1 281 65.8
FAN27G1075 Fragaria x ananassa HOM05D002889 ORTHO05D003366 2.9e-91 339.0 281 65.1
FAN15G1177 Fragaria x ananassa HOM05D002889 ORTHO05D003366 8.5e-91 337.4 281 65.5
Prupe.8G209400 Prunus persica HOM05D002889 ORTHO05D003366 2.0e-87 326.2 282 64.5
MD05G1182800 Malus domestica HOM05D002889 ORTHO05D003366 4.3e-87 325.1 282 64.2
Cfa002518 Carpinus fangiana HOM05D002889 ORTHO05D003366 9.7e-87 323.9 281 62.6
CiPaw.03G153400 Carya illinoinensis HOM05D002889 ORTHO05D003366 9.7e-87 323.9 281 62.6
MD10G1170900 Malus domestica HOM05D002889 ORTHO05D003366 9.7e-87 323.9 281 63.3
Manes.12G044400 Manihot esculenta HOM05D002889 ORTHO05D003366 1.3e-86 323.6 282 63.1
Haze_24745 Corylus avellana HOM05D002889 ORTHO05D003366 4.8e-86 321.6 281 62.6
Thecc.01G236600 Theobroma cacao HOM05D002889 ORTHO05D003366 6.3e-86 321.2 284 62.0
QL09p043970 Quercus lobata HOM05D002889 ORTHO05D003366 1.4e-85 320.1 285 62.1
Gohir.D07G208500 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.8e-85 319.7 283 61.1
Gorai.001G235400 Gossypium raimondii HOM05D002889 ORTHO05D003366 3.1e-85 318.9 283 61.1
Gorai.004G223500 Gossypium raimondii HOM05D002889 ORTHO05D003366 3.1e-85 318.9 282 62.1
Atru.chr5.1927 Acer truncatum HOM05D002889 ORTHO05D003366 4.1e-85 318.5 282 62.4
Gohir.A07G202300 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.3e-85 318.2 283 60.8
CiPaw.04G108600 Carya illinoinensis HOM05D002889 ORTHO05D003366 6.9e-85 317.8 285 61.8
Duzib138G1300 Durio zibethinus HOM05D002889 ORTHO05D003366 1.2e-84 317.0 284 61.3
Gohir.D08G210800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.2e-84 317.0 282 61.7
Sabra02G0192400 Salix brachista HOM05D002889 ORTHO05D003366 1.2e-84 317.0 282 62.1
Lj2C1137G6 Lonicera japonica HOM05D002889 ORTHO05D003366 1.5e-84 316.6 285 60.4
Potri.002G253200 Populus trichocarpa HOM05D002889 ORTHO05D003366 1.5e-84 316.6 282 62.1
CSS0022688 Camellia sinensis var. sinensis HOM05D002889 ORTHO05D003366 2.0e-84 316.2 282 62.1
Gohir.A08G192800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 2.0e-84 316.2 282 61.7
Cpa.g.sc8.204 Carica papaya HOM05D002889 ORTHO05D003366 2.6e-84 315.8 282 61.7
Ciclev10018498m.g Citrus clementina HOM05D002889 ORTHO05D003366 5.9e-84 314.7 282 61.7
Duzib133G1137 Durio zibethinus HOM05D002889 ORTHO05D003366 1.3e-83 313.5 284 60.6
DCAR_018539 Daucus carota HOM05D002889 ORTHO05D003366 2.2e-83 312.8 285 59.6
Dinv43034 Davidia involucrata HOM05D002889 ORTHO05D003366 5.0e-83 311.6 282 61.0
Dinv19241 Davidia involucrata HOM05D002889 ORTHO05D003366 6.5e-83 311.2 281 61.2
DCAR_012623 Daucus carota HOM05D002889 ORTHO05D003366 1.9e-82 309.7 285 58.9
Peaxi162Scf00052g02011 Petunia axillaris HOM05D002889 ORTHO05D003366 1.9e-82 309.7 284 59.5
Manes.13G042800 Manihot esculenta HOM05D002889 ORTHO05D003366 2.5e-82 309.3 282 60.6
Nitab4.5_0024802g0010 Nicotiana tabacum HOM05D002889 ORTHO05D003366 4.2e-82 308.5 284 59.5
TWI59G1284 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 4.2e-82 308.5 283 60.8
Nitab4.5_0000813g0100 Nicotiana tabacum HOM05D002889 ORTHO05D003366 5.5e-82 308.1 284 59.5
PGR044G2403 Punica granatum HOM05D002889 ORTHO05D003366 5.5e-82 308.1 282 59.6
Rhsim13G0041900 Rhododendron simsii HOM05D002889 ORTHO05D003366 7.2e-82 307.8 285 59.3
Sc05g0002470 Simmondsia chinensis HOM05D002889 ORTHO05D003366 9.4e-82 307.4 281 60.1
Glyma.03G170000 Glycine max HOM05D002889 ORTHO05D003366 1.2e-81 307.0 282 59.6
Lj1A81G48 Lonicera japonica HOM05D002889 ORTHO05D003366 1.2e-81 307.0 285 60.0
Sed0016475 Sechium edule HOM05D002889 ORTHO05D003366 1.6e-81 306.6 282 59.2
Cc01_g17450 Coffea canephora HOM05D002889 ORTHO05D003366 2.1e-81 306.2 281 59.8
Solyc09g063030.4 Solanum lycopersicum HOM05D002889 ORTHO05D003366 2.7e-81 305.8 284 59.2
TWI14G1217 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 2.7e-81 305.8 285 60.0
ClCG09G009410 Citrullus lanatus HOM05D002889 ORTHO05D003366 3.6e-81 305.4 282 59.6
MELO3C024150.2 Cucumis melo HOM05D002889 ORTHO05D003366 3.6e-81 305.4 282 59.6
CsaV3_7G025450 Cucumis sativus L. HOM05D002889 ORTHO05D003366 3.6e-81 305.4 282 59.6
Nitab4.5_0002727g0040 Nicotiana tabacum HOM05D002889 ORTHO05D003366 3.6e-81 305.4 285 58.2
Nitab4.5_0003180g0050 Nicotiana tabacum HOM05D002889 ORTHO05D003366 3.6e-81 305.4 285 57.9
Hund18347 Selenicereus undatus HOM05D002889 ORTHO05D003366 3.6e-81 305.4 281 58.0
Sopen09g025200 Solanum pennellii HOM05D002889 ORTHO05D003366 4.7e-81 305.1 284 59.2
Oeu017344.1 Olea europaea HOM05D002889 ORTHO05D003366 6.1e-81 304.7 284 58.1
Migut.N02247 Erythranthe guttata HOM05D002889 ORTHO05D003366 7.9e-81 304.3 281 58.0
Glyma.13G130000 Glycine max HOM05D002889 ORTHO05D003366 1.0e-80 303.9 281 58.0
Lalb_Chr02g0152941 Lupinus albus HOM05D002889 ORTHO05D003366 1.0e-80 303.9 281 58.4
Lalb_Chr25g0289711 Lupinus albus HOM05D002889 ORTHO05D003366 1.0e-80 303.9 282 58.9
Medtr1g069165 Medicago truncatula HOM05D002889 ORTHO05D003366 1.0e-80 303.9 281 58.4
Peaxi162Scf00499g00610 Petunia axillaris HOM05D002889 ORTHO05D003366 1.0e-80 303.9 285 57.2
vmacro02730 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 1.0e-80 303.9 285 58.6
CAN.G154.1 Capsicum annuum HOM05D002889 ORTHO05D003366 1.4e-80 303.5 284 58.8
CAN.G941.45 Capsicum annuum HOM05D002889 ORTHO05D003366 1.4e-80 303.5 285 57.5
Phvul.001G168400 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 1.4e-80 303.5 280 59.3
SalBow6G0687 Salvia bowleyana HOM05D002889 ORTHO05D003366 1.4e-80 303.5 284 58.1
TAR362G1318 Trochodendron aralioides HOM05D002889 ORTHO05D003366 1.4e-80 303.5 282 58.9
Psat6g064880 Pisum sativum HOM05D002889 ORTHO05D003366 1.8e-80 303.1 281 57.3
VMungo1383G1051 Vigna mungo HOM05D002889 ORTHO05D003366 1.8e-80 303.1 282 58.9
Ca_08769_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 2.3e-80 302.8 282 58.5
TPR.G35800 Trifolium pratense HOM05D002889 ORTHO05D003366 2.3e-80 302.8 281 57.7
Ca_09624_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 6.7e-80 301.2 281 57.7
Glyma.10G042600 Glycine max HOM05D002889 ORTHO05D003366 6.7e-80 301.2 280 58.6
Glyma.19G171200 Glycine max HOM05D002889 ORTHO05D003366 6.7e-80 301.2 282 58.9
ECA236G1707 Erigeron canadensis HOM05D002889 ORTHO05D003366 8.8e-80 300.8 285 57.5
Phvul.007G156100 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 8.8e-80 300.8 281 58.4
Medtr7g099480 Medicago truncatula HOM05D002889 ORTHO05D003366 1.1e-79 300.4 282 57.8
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 1.1e-79 300.4 288 55.6
Ah.08g213900 Amaranthus hybridus HOM05D002889 ORTHO05D003366 1.5e-79 300.1 280 57.5
BcaC04g22811 Brassica carinata HOM05D002889 ORTHO05D003366 2.0e-79 299.7 281 56.2
A09p12740 Brassica napus HOM05D002889 ORTHO05D003366 2.0e-79 299.7 281 56.2
C09p15080 Brassica napus HOM05D002889 ORTHO05D003366 2.0e-79 299.7 281 56.2
BolC9t54414H Brassica oleracea HOM05D002889 ORTHO05D003366 2.0e-79 299.7 281 56.2
BraA09t36918Z Brassica rapa HOM05D002889 ORTHO05D003366 2.0e-79 299.7 281 56.2
Lj5g0008167 Lotus japonicus HOM05D002889 ORTHO05D003366 2.0e-79 299.7 281 57.7
Sed0001453 Sechium edule HOM05D002889 ORTHO05D003366 2.0e-79 299.7 282 58.2
Solyc06g008040.3 Solanum lycopersicum HOM05D002889 ORTHO05D003366 2.0e-79 299.7 282 57.4
Sopen06g002880 Solanum pennellii HOM05D002889 ORTHO05D003366 3.3e-79 298.9 282 57.4
TPR.G7556 Trifolium pratense HOM05D002889 ORTHO05D003366 3.3e-79 298.9 282 57.8
VMungo0720G0228 Vigna mungo HOM05D002889 ORTHO05D003366 3.3e-79 298.9 281 57.7
BcaNung04093 Brassica carinata HOM05D002889 ORTHO05D003366 5.7e-79 298.1 281 55.5
PSO170G4103 Papaver somniferum HOM05D002889 ORTHO05D003366 5.7e-79 298.1 281 58.7
TWI23G0798 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 5.7e-79 298.1 283 59.4
arahy.Tifrunner.gnm1.ann1.PFSA3S Arachis hypogaea HOM05D002889 ORTHO05D003366 9.7e-79 297.4 281 56.6
Eucgr.H00823 Eucalyptus grandis HOM05D002889 ORTHO05D003366 1.3e-78 297.0 280 56.8
AUR62008857 Chenopodium quinoa HOM05D002889 ORTHO05D003366 1.7e-78 296.6 277 57.4
Nn1g03087 Nelumbo nucifera HOM05D002889 ORTHO05D003366 1.7e-78 296.6 285 57.9
Nn3g19858 Nelumbo nucifera HOM05D002889 ORTHO05D003366 1.7e-78 296.6 285 58.2
Actinidia09497 Actinidia chinensis HOM05D002889 ORTHO05D003366 2.2e-78 296.2 285 57.2
HanXRQChr10g0287251 Helianthus annuus HOM05D002889 ORTHO05D003366 2.2e-78 296.2 283 56.2
TAR365G1138 Trochodendron aralioides HOM05D002889 ORTHO05D003366 2.2e-78 296.2 281 59.1
Eucgr.K03590 Eucalyptus grandis HOM05D002889 ORTHO05D003366 2.8e-78 295.8 285 56.5
arahy.Tifrunner.gnm1.ann1.EIAU9G Arachis hypogaea HOM05D002889 ORTHO05D003366 3.7e-78 295.4 281 56.2
BcaB03g16811 Brassica carinata HOM05D002889 ORTHO05D003366 3.7e-78 295.4 281 55.5
Thhalv10001879m.g Eutrema salsugineum HOM05D002889 ORTHO05D003366 4.8e-78 295.0 281 55.5
arahy.Tifrunner.gnm1.ann1.73DRY2 Arachis hypogaea HOM05D002889 ORTHO05D003366 6.3e-78 294.7 282 56.7
arahy.Tifrunner.gnm1.ann1.CB4TML Arachis hypogaea HOM05D002889 ORTHO05D003366 6.3e-78 294.7 282 56.7
MSTRG.17535 Avicennia marina HOM05D002889 ORTHO05D003366 6.3e-78 294.7 283 56.2
Carub.0003s3449 Capsella rubella HOM05D002889 ORTHO05D003366 6.3e-78 294.7 281 55.9
PSO764G0331 Papaver somniferum HOM05D002889 ORTHO05D003366 6.3e-78 294.7 281 58.0
Aqoxy5G00053 Aquilegia oxysepala HOM05D002889 ORTHO05D003366 8.2e-78 294.3 280 57.5
AUR62025387 Chenopodium quinoa HOM05D002889 ORTHO05D003366 8.2e-78 294.3 277 57.0
Sp3g33430 Schrenkiella parvula HOM05D002889 ORTHO05D003366 1.1e-77 293.9 281 55.2
Lsat_1_v5_gn_8_90261 Lactuca sativa HOM05D002889 ORTHO05D003366 1.4e-77 293.5 287 57.1
Lj1g0020070 Lotus japonicus HOM05D002889 ORTHO05D003366 1.4e-77 293.5 282 56.7
BcaC06g36696 Brassica carinata HOM05D002889 ORTHO05D003366 1.8e-77 293.1 281 55.5
C07p00990 Brassica napus HOM05D002889 ORTHO05D003366 1.8e-77 293.1 281 55.5
BolC7t40536H Brassica oleracea HOM05D002889 ORTHO05D003366 1.8e-77 293.1 281 55.5
Rhsim01G0258400 Rhododendron simsii HOM05D002889 ORTHO05D003366 1.8e-77 293.1 282 57.8
MSTRG.12505 Avicennia marina HOM05D002889 ORTHO05D003366 3.1e-77 292.4 273 58.2
SGA_v2.0_scaffold42G16158 Striga asiatica HOM05D002889 ORTHO05D003366 3.1e-77 292.4 288 55.2
BraA07t27848Z Brassica rapa HOM05D002889 ORTHO05D003366 4.1e-77 292.0 281 55.2
Gohir.D07G160200 Gossypium hirsutum HOM05D002889 ORTHO05D003366 4.1e-77 292.0 284 57.7
Gorai.001G183300 Gossypium raimondii HOM05D002889 ORTHO05D003366 4.1e-77 292.0 284 57.7
vmacro14772 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 4.1e-77 292.0 282 58.2
AT2G20190 Arabidopsis thaliana HOM05D002889 ORTHO05D003366 5.3e-77 291.6 281 55.2
Gohir.A07G154000 Gossypium hirsutum HOM05D002889 ORTHO05D003366 7.0e-77 291.2 279 58.4
CARHR110690 Cardamine hirsuta HOM05D002889 ORTHO05D003366 9.1e-77 290.8 281 55.2
HanXRQChr13g0409041 Helianthus annuus HOM05D002889 ORTHO05D003366 1.2e-76 290.4 282 56.0
Aa31LG8G17120 Aethionema arabicum HOM05D002889 ORTHO05D003366 1.0e-75 287.3 281 54.4
AL3G47890 Arabidopsis lyrata HOM05D002889 ORTHO05D003366 1.0e-75 287.3 281 54.1
Hund05497 Selenicereus undatus HOM05D002889 ORTHO05D003366 1.0e-75 287.3 277 56.7
THA.LOC104820061 Tarenaya hassleriana HOM05D002889 ORTHO05D003366 1.3e-75 287.0 282 55.0
SGA_v2.0_scaffold3G01589 Striga asiatica HOM05D002889 ORTHO05D003366 2.2e-75 286.2 279 55.6
EL10Ac7g17762 Beta vulgaris HOM05D002889 ORTHO05D003366 2.9e-75 285.8 280 55.4
A07p00540 Brassica napus HOM05D002889 ORTHO05D003366 2.9e-75 285.8 282 54.6
Lsat_1_v5_gn_9_11241 Lactuca sativa HOM05D002889 ORTHO05D003366 6.5e-75 284.6 276 58.0
HPP92_027294 Vanilla planifolia HOM05D002889 ORTHO05D003366 3.0e-72 275.8 282 53.9
unitig_746.g26747 Utricularia gibba HOM05D002889 ORTHO05D003366 3.9e-72 275.4 281 52.7
ATR0787G124 Amborella trichopoda HOM05D002889 ORTHO05D003366 8.8e-72 274.2 282 53.5
unitig_899.g15235 Utricularia gibba HOM05D002889 ORTHO05D003366 2.8e-70 269.2 280 51.4
SHI30570 Sapria himalayana HOM05D002889 ORTHO05D003366 1.1e-69 267.3 283 52.7
MBI10_g16806_MAGBIO Magnolia biondii HOM05D002889 ORTHO05D003366 1.6e-68 263.5 286 51.4
Zm00001eb426220 Zea mays HOM05D002889 ORTHO05D003366 7.2e-66 254.6 279 50.9
Gohir.D09G053074 Gossypium hirsutum HOM05D002889 ORTHO05D003366 9.4e-66 254.2 283 48.4
Duzib212G0822 Durio zibethinus HOM05D002889 ORTHO05D003366 2.7e-65 252.7 283 49.1
Thecc.04G215400 Theobroma cacao HOM05D002889 ORTHO05D003366 2.7e-65 252.7 282 50.4
Gohir.A09G053900 Gossypium hirsutum HOM05D002889 ORTHO05D003366 4.7e-65 251.9 283 47.7
Gorai.006G054600 Gossypium raimondii HOM05D002889 ORTHO05D003366 4.7e-65 251.9 282 48.2
COL.COLO4_05728 Corchorus olitorius HOM05D002889 ORTHO05D003366 1.0e-64 250.8 282 50.0
PGR083G0457 Punica granatum HOM05D002889 ORTHO05D003366 1.8e-64 250.0 285 49.8
Zm00001eb077900 Zea mays HOM05D002889 ORTHO05D003366 5.7e-63 245.0 280 50.0
SMO358G0024 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 5.7e-55 218.4 276 44.9
AagrBONN_evm.TU.Sc2ySwM_228.3600 Anthoceros agrestis HOM05D002889 ORTHO05D003366 7.5e-55 218.0 275 45.1
Mapoly0066s0036 Marchantia polymorpha HOM05D002889 ORTHO05D003366 1.8e-53 213.4 271 44.6
Pp3c8_18290 Physcomitrium patens HOM05D002889 ORTHO05D003366 3.1e-53 212.6 275 44.4
Psat5g201480 Pisum sativum HOM05D002889 ORTHO05D003366 2.7e-52 209.5 230 50.9
Pp3c24_11460 Physcomitrium patens HOM05D002889 ORTHO05D003366 2.3e-51 206.5 275 43.6
SMO271G0072 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 3.8e-51 205.7 262 43.9
Pp3c3_31820 Physcomitrium patens HOM05D002889 ORTHO05D003366 1.7e-46 190.3 273 41.8
AagrBONN_evm.TU.Sc2ySwM_344.3269 Anthoceros agrestis HOM05D002889 ORTHO05D003366 4.9e-46 188.7 253 42.7
CDE02G1653 Ceratophyllum demersum HOM05D002889 ORTHO05D002017 1.5e-42 177.2 224 45.5
Lalb_Chr20g0113361 Lupinus albus HOM05D002889 ORTHO05D003366 7.3e-42 174.9 233 48.1
Os02g0816300 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 1.6e-41 173.7 262 40.8
Zm00001eb258850 Zea mays HOM05D002889 ORTHO05D003366 3.6e-41 172.6 262 38.5
Psat3g050160 Pisum sativum HOM05D002889 ORTHO05D003366 8.9e-40 167.9 112 69.6
EL10Ac7g17763 Beta vulgaris HOM05D002889 ORTHO05D003366 5.8e-39 165.2 110 69.1
EL10Ac7g17765 Beta vulgaris HOM05D002889 ORTHO05D003366 5.8e-39 165.2 110 69.1
EL10Ac7g17767 Beta vulgaris HOM05D002889 ORTHO05D003366 5.8e-39 165.2 110 69.1
Psat5g305680 Pisum sativum HOM05D002889 ORTHO05D003366 1.4e-37 160.6 164 53.0
Psat1g069640 Pisum sativum HOM05D002889 ORTHO05D003366 7.8e-36 154.8 108 74.1
CBR_g12856 Chara braunii HOM05D002889 ORTHO05D003366 2.9e-30 136.3 248 31.5
CDE08G0296 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 8.3e-30 134.8 271 34.3
Oeu015449.1 Olea europaea HOM05D002889 ORTHO05D003366 1.7e-27 127.1 82 73.2
Psat5g155920 Pisum sativum HOM05D002889 ORTHO05D003366 7.6e-15 85.1 55 63.6
Psat7g250920 Pisum sativum HOM05D002889 ORTHO05D003366 4.6e-12 75.9 51 60.8
Actinidia37571 Actinidia chinensis HOM05D002889 ORTHO05D056472 1.2e-07 61.2 223 31.4


User provided reference genes

Program Settings