Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.5e-248 861.7 451 100.0
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 2.3e-217 758.8 452 88.5
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.3e-215 750.7 452 87.6
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.4e-214 749.6 451 87.8
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 4.2e-211 738.0 452 87.2
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 3.4e-168 595.5 457 72.4
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 6.4e-167 591.3 457 70.9
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.8e-165 584.3 432 75.5
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.7e-164 583.2 463 70.2
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.9e-134 483.4 461 60.7
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 5.5e-134 481.9 472 58.7
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 1.0e-132 477.6 468 58.5
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 8.7e-132 474.6 451 59.4
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.3e-131 472.6 466 58.8
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 2.2e-130 469.9 460 58.3
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.4e-129 466.5 468 57.7
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 9.0e-129 464.5 473 56.9
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 3.4e-128 462.6 468 56.6
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 5.9e-128 461.8 465 58.9
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 2.2e-127 459.9 475 56.4
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 6.5e-127 458.4 475 56.0
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.4e-126 457.2 468 55.6
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.9e-126 456.8 466 55.6
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 4.2e-126 455.7 467 56.5
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 5.5e-126 455.3 465 56.6
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 7.9e-125 451.4 458 56.3
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 7.9e-125 451.4 460 57.4
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 2.3e-124 449.9 473 57.3
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.5e-123 447.2 460 55.7
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 2.8e-122 443.0 472 56.1
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 4.8e-122 442.2 468 55.6
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 6.3e-122 441.8 471 54.6
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 6.3e-122 441.8 461 56.2
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.1e-121 441.0 464 53.9
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.6e-120 436.4 476 55.7
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 2.6e-120 436.4 471 55.4
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.4e-120 436.0 460 54.8
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.4e-120 436.0 460 54.8
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 7.7e-120 434.9 476 53.4
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.0e-119 434.5 476 56.1
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.7e-119 433.7 476 55.5
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.7e-119 433.7 468 54.9
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 8.5e-119 431.4 473 54.8
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 1.1e-118 431.0 470 56.4
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 4.2e-118 429.1 471 54.4
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.2e-118 429.1 468 54.5
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 2.7e-117 426.4 469 53.3
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 3.6e-117 426.0 465 53.8
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.1e-116 422.2 465 53.8
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 8.8e-116 421.4 464 55.2
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.4e-115 419.1 471 52.9
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.7e-114 417.2 595 45.5
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.7e-114 417.2 466 53.9
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.2e-114 416.8 474 53.0
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.8e-113 413.7 463 52.1
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 5.9e-112 408.7 468 51.9
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.0e-111 407.9 472 50.4
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.7e-111 407.1 478 51.5
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.5e-110 402.1 468 51.1
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 9.4e-110 401.4 472 51.1
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.6e-109 400.6 472 51.5
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.7e-109 399.8 475 51.4
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 4.7e-109 399.1 462 52.8
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.0e-108 397.9 472 51.3
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.4e-108 397.5 468 50.6
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 7.4e-107 391.7 466 48.7
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 2.8e-106 389.8 491 48.5
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 3.7e-106 389.4 531 46.9
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 6.3e-106 388.7 466 48.7
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 3.1e-105 386.3 461 51.8
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.6e-104 383.3 464 49.4
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.6e-104 383.3 473 48.2
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.0e-103 381.3 470 49.4
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.0e-103 381.3 476 47.5
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 2.9e-103 379.8 464 48.5
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 3.8e-103 379.4 464 48.3
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 3.8e-103 379.4 468 48.5
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.1e-102 377.9 472 48.1
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.5e-102 377.5 466 49.1
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.5e-102 376.7 465 48.0
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.2e-102 376.3 465 48.0
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.2e-102 375.9 469 48.2
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 9.4e-102 374.8 465 47.5
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 2.7e-101 373.2 465 47.5
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 2.7e-101 373.2 471 48.8
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.7e-101 373.2 315 61.9
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.6e-101 372.9 462 46.5
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 6.1e-101 372.1 453 48.8
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 8.0e-101 371.7 469 47.5
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.8e-100 370.5 462 48.7
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.4e-99 365.9 472 48.1
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 5.7e-99 365.5 406 53.7
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.2e-98 363.6 467 46.0
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 4.8e-98 362.5 471 47.3
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 5.3e-97 359.0 463 48.6
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 3.5e-96 356.3 460 47.0
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 2.2e-95 353.6 482 47.7
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.9e-95 353.2 425 52.5
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 6.5e-95 352.1 499 44.3
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 6.5e-95 352.1 461 47.1
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 3.2e-94 349.7 485 44.3
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 4.2e-94 349.4 465 46.0
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.2e-93 347.8 468 44.4
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 3.6e-93 346.3 454 45.8
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 3.0e-92 343.2 528 43.6
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.5e-91 340.9 455 47.7
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 9.8e-91 338.2 367 56.4
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.3e-90 337.8 461 46.0
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.3e-90 337.8 456 45.8
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.7e-90 337.4 461 45.3
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.1e-89 334.7 462 46.3
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 9.1e-89 331.6 453 45.5
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.2e-88 331.3 461 45.8
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.6e-88 330.9 279 63.1
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 2.0e-88 330.5 416 46.4
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 2.7e-88 330.1 450 45.8
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 7.7e-88 328.6 469 43.7
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 7.7e-88 328.6 462 43.9
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 3.8e-87 326.2 416 46.9
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 2.5e-86 323.6 459 43.8
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 3.3e-86 323.2 485 43.3
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 5.5e-86 322.4 304 56.6
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 2.1e-85 320.5 461 45.3
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 2.6e-83 313.5 456 45.8
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.6e-80 304.3 429 44.5
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 3.9e-79 299.7 448 44.0
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 8.6e-79 298.5 370 51.4
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 4.3e-78 296.2 425 44.5
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.0e-76 291.6 366 47.3
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.8e-76 290.8 356 46.6
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 3.4e-75 286.6 392 44.4
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.3e-74 284.6 433 42.0
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 3.7e-74 283.1 405 43.5
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.0e-72 277.3 470 40.6
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 6.0e-72 275.8 383 45.4
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 8.0e-69 265.4 306 48.4
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.5e-67 261.2 435 41.4
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 9.8e-67 258.5 375 41.9
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 3.7e-66 256.5 241 56.4
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.9e-65 254.2 371 46.4
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 3.2e-65 253.4 212 60.8
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 3.2e-65 253.4 349 43.0
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.9e-62 244.2 310 43.2
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.2e-61 241.5 310 42.9
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.1e-60 238.4 350 43.4
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.5e-59 234.6 368 43.5
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 2.2e-58 230.7 351 40.2
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 8.3e-58 228.8 306 45.1
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 5.1e-55 219.5 337 41.8
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 9.6e-54 215.3 142 73.2
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 2.1e-53 214.2 200 57.0
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 2.4e-52 210.7 382 39.8
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.9e-50 203.8 451 32.8
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 8.4e-50 202.2 458 35.8
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.1e-49 201.8 296 40.5
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 2.7e-48 197.2 287 42.5
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 6.0e-48 196.1 254 45.7
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.0e-47 195.3 355 38.0
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.1e-45 187.6 343 37.6
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.1e-45 187.6 223 50.2
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 2.8e-45 187.2 300 39.0
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 6.2e-45 186.0 224 46.4
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.4e-44 184.9 229 47.2
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 3.1e-36 157.1 140 57.1
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.1e-33 148.7 100 74.0
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 4.2e-33 146.7 215 43.3
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 2.1e-29 134.4 359 30.9
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.2e-26 124.4 199 37.7
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.6e-24 118.2 72 80.6
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 3.5e-24 117.1 102 52.9
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 5.1e-23 113.2 196 37.8
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 5.7e-22 109.8 193 37.3
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.8e-20 104.8 81 63.0
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 4.5e-19 100.1 85 57.6
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.1e-17 95.5 87 57.5
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 7.9e-16 89.4 59 76.3
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 8.5e-10 69.3 52 63.5
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 7.2e-09 66.2 117 36.8
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 7.4e-06 56.2 34 73.5


User provided reference genes

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