Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0330541 Rosa chinensis HOM05D000576 ORTHO05D000368 1.1e-47 193.0 94 100.0
RcHm_v2.0_Chr1g0330451 Rosa chinensis HOM05D000576 ORTHO05D000368 5.8e-46 187.2 94 96.8
Prupe.7G069200 Prunus persica HOM05D000576 ORTHO05D000368 1.8e-18 95.9 94 54.3
MD02G1028400 Malus domestica HOM05D000005 ORTHO05D000368 9.7e-17 90.1 91 51.6
MD14G1064800 Malus domestica HOM05D000576 ORTHO05D000368 4.8e-16 87.8 93 51.6
FvH4_1g04280 Fragaria vesca HOM05D000576 ORTHO05D000368 8.2e-16 87.0 95 50.5
MD02G1024100 Malus domestica HOM05D000576 ORTHO05D000368 1.4e-15 86.3 93 49.5
Prupe.6G354500 Prunus persica HOM05D000576 ORTHO05D000368 2.4e-15 85.5 92 50.0
Prupe.5G181600 Prunus persica HOM05D000576 ORTHO05D000368 5.3e-15 84.3 89 50.6
RcHm_v2.0_Chr2g0160681 Rosa chinensis HOM05D000576 ORTHO05D000368 5.3e-15 84.3 91 47.3
FvH4_1g04271 Fragaria vesca HOM05D000576 ORTHO05D000368 1.5e-14 82.8 95 49.5
Prupe.3G194200 Prunus persica HOM05D000576 ORTHO05D000368 4.5e-14 81.3 95 45.3
FAN19G1792 Fragaria x ananassa HOM05D000576 ORTHO05D000368 5.9e-14 80.9 92 46.7
FAN28G2519 Fragaria x ananassa HOM05D000576 ORTHO05D000368 5.9e-14 80.9 96 45.8
RcHm_v2.0_Chr1g0360451 Rosa chinensis HOM05D000576 ORTHO05D000368 1.0e-13 80.1 91 45.1
FAN05G5357 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.3e-13 79.7 92 44.6
MD02G1269100 Malus domestica HOM05D000576 ORTHO05D000368 1.7e-13 79.3 93 46.2
RcHm_v2.0_Chr6g0302471 Rosa chinensis HOM05D000576 ORTHO05D035880 1.7e-13 79.3 91 48.4
FvH4_1g04270 Fragaria vesca HOM05D000576 ORTHO05D000368 2.9e-13 78.6 95 46.3
Hma1.2p1_1677F.1_g297050 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 2.9e-13 78.6 94 43.6
RcHm_v2.0_Chr3g0449571 Rosa chinensis HOM05D000576 ORTHO05D000368 2.9e-13 78.6 92 46.7
FvH4_1g04260 Fragaria vesca HOM05D002514 ORTHO05D000368 3.8e-13 78.2 88 47.7
Hma1.2p1_1488F.1_g286620 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 3.8e-13 78.2 94 43.6
FvH4_2g38801 Fragaria vesca HOM05D000576 ORTHO05D000368 5.0e-13 77.8 91 46.2
FvH4_6g05150 Fragaria vesca HOM05D000576 ORTHO05D000368 5.0e-13 77.8 96 42.7
Prupe.7G247200 Prunus persica HOM05D000576 ORTHO05D000368 5.0e-13 77.8 92 43.5
RcHm_v2.0_Chr3g0449541 Rosa chinensis HOM05D000576 ORTHO05D000368 6.5e-13 77.4 92 42.4
Dinv21743 Davidia involucrata HOM05D000576 ORTHO05D000368 1.1e-12 76.6 96 42.7
MSTRG.8963 Avicennia marina HOM05D000576 ORTHO05D000368 2.5e-12 75.5 96 42.7
RcHm_v2.0_Chr3g0449591 Rosa chinensis HOM05D000576 ORTHO05D000368 2.5e-12 75.5 92 44.6
FAN05G4776 Fragaria x ananassa HOM05D000205 ORTHO05D000438 4.2e-12 74.7 86 44.2
FAN05G5654 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.2e-12 74.7 86 44.2
FAN19G2457 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.2e-12 74.7 91 47.3
Oeu048256.1 Olea europaea HOM05D000576 ORTHO05D000368 4.2e-12 74.7 92 45.7
RcHm_v2.0_Chr3g0448841 Rosa chinensis HOM05D000576 ORTHO05D000368 5.5e-12 74.3 90 47.8
RcHm_v2.0_Chr3g0449531 Rosa chinensis HOM05D000576 ORTHO05D000368 9.4e-12 73.6 94 44.7
FvH4_6g01850 Fragaria vesca HOM05D000576 ORTHO05D000368 1.2e-11 73.2 95 43.2
RcHm_v2.0_Chr3g0449581 Rosa chinensis HOM05D000576 ORTHO05D000368 2.1e-11 72.4 94 43.6
FAN03G2698 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.7e-11 72.0 91 41.8
FAN03G3513 Fragaria x ananassa HOM05D000576 ORTHO05D008832 2.7e-11 72.0 93 47.3
FAN06G0443 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.6e-11 71.2 93 47.3
QL08p062492 Quercus lobata HOM05D000576 ORTHO05D000368 6.1e-11 70.9 93 41.9
RcHm_v2.0_Chr3g0449821 Rosa chinensis HOM05D000576 ORTHO05D000368 6.1e-11 70.9 92 40.2
FAN01G1594 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.0e-10 70.1 92 45.7
Migut.J01303 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.4e-10 69.7 88 45.5
RcHm_v2.0_Chr7g0192671 Rosa chinensis HOM05D000576 ORTHO05D000368 1.4e-10 69.7 94 41.5
RcHm_v2.0_Chr7g0197551 Rosa chinensis HOM05D000576 ORTHO05D000368 1.4e-10 69.7 92 42.4
COL.COLO4_27090 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.8e-10 69.3 85 42.4
FvH4_7g08150 Fragaria vesca HOM05D000576 ORTHO05D000368 1.8e-10 69.3 93 45.2
FAN02G2935 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.3e-10 68.9 94 40.4
RcHm_v2.0_Chr2g0105251 Rosa chinensis HOM05D000576 ORTHO05D029628 3.9e-10 68.2 93 47.3
FAN20G1480 Fragaria x ananassa HOM05D000576 ORTHO05D000368 5.1e-10 67.8 66 54.5
Peaxi162Scf00041g00103 Petunia axillaris HOM05D000576 ORTHO05D000368 5.1e-10 67.8 94 39.4
Prupe.8G159200 Prunus persica HOM05D000576 ORTHO05D000368 5.1e-10 67.8 89 42.7
Migut.J00211 Erythranthe guttata HOM05D000576 ORTHO05D000368 6.7e-10 67.4 90 44.4
FAN15G0784 Fragaria x ananassa HOM05D000576 ORTHO05D000368 8.8e-10 67.0 81 49.4
FAN05G4495 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.1e-09 66.6 88 44.3
Hma1.2p1_0024F.1_g015920 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 1.1e-09 66.6 95 42.1
Hma1.2p1_2024F.1_g311420 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 1.1e-09 66.6 95 42.1
Migut.J00210 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.5e-09 66.2 87 42.5
FAN05G2942 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.5e-09 66.2 108 38.9
FAN05G3726 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.5e-09 66.2 94 39.4
FvH4_6g01970 Fragaria vesca HOM05D000576 ORTHO05D000368 2.0e-09 65.9 94 39.4
FAN01G1348 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.0e-09 65.9 90 45.6
FAN05G5531 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.0e-09 65.9 94 39.4
FAN05G5241 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.5e-09 65.5 88 44.3
Peaxi162Scf00041g00112 Petunia axillaris HOM05D000576 ORTHO05D000368 2.5e-09 65.5 92 39.1
RcHm_v2.0_Chr7g0184471 Rosa chinensis HOM05D000576 ORTHO05D000368 2.5e-09 65.5 90 38.9
FvH4_6g01240 Fragaria vesca HOM05D000576 ORTHO05D000368 3.3e-09 65.1 88 46.6
FvH4_6g05140 Fragaria vesca HOM05D000576 ORTHO05D000368 3.3e-09 65.1 91 40.7
Nitab4.5_0005673g0030 Nicotiana tabacum HOM05D000576 ORTHO05D000368 3.3e-09 65.1 92 37.0
Cfa001772 Carpinus fangiana HOM05D000576 ORTHO05D000368 4.3e-09 64.7 91 44.0
Migut.F00694 Erythranthe guttata HOM05D000576 ORTHO05D000368 5.7e-09 64.3 96 38.5
FAN05G2174 Fragaria x ananassa HOM05D000576 ORTHO05D035880 5.7e-09 64.3 91 38.5
FAN05G3965 Fragaria x ananassa HOM05D000576 ORTHO05D000368 5.7e-09 64.3 91 38.5
FAN14G1549 Fragaria x ananassa HOM05D000576 ORTHO05D000368 5.7e-09 64.3 87 46.0
HanXRQChr08g0221771 Helianthus annuus HOM05D000576 ORTHO05D000368 5.7e-09 64.3 91 39.6
Migut.J00214 Erythranthe guttata HOM05D000576 ORTHO05D000368 7.4e-09 63.9 90 43.3
FAN03G2208 Fragaria x ananassa HOM05D008289 ORTHO05D008832 7.4e-09 63.9 93 43.0
Rhsim02G0021500 Rhododendron simsii HOM05D000576 ORTHO05D000368 7.4e-09 63.9 87 41.4
SGA_v2.0_scaffold44G16702 Striga asiatica HOM05D000576 ORTHO05D000368 7.4e-09 63.9 92 39.1
Migut.G01093 Erythranthe guttata HOM05D000576 ORTHO05D000368 9.7e-09 63.5 95 40.0
Migut.J00215 Erythranthe guttata HOM05D000576 ORTHO05D000368 9.7e-09 63.5 91 36.3
FAN02G1180 Fragaria x ananassa HOM05D000576 ORTHO05D000368 9.7e-09 63.5 91 39.6
PGSC0003DMG400026860 Solanum tuberosum HOM05D000576 ORTHO05D000368 9.7e-09 63.5 88 39.8
Eucgr.A02273 Eucalyptus grandis HOM05D000576 ORTHO05D000368 1.3e-08 63.2 85 44.7
Prupe.5G213700 Prunus persica HOM05D000576 ORTHO05D000368 1.3e-08 63.2 87 41.4
CSS0015792 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 1.7e-08 62.8 92 42.4
Haze_16783 Corylus avellana HOM05D000576 ORTHO05D000368 1.7e-08 62.8 46 65.2
FAN14G0093 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.7e-08 62.8 88 40.9
FAN14G5717 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.7e-08 62.8 94 38.3
Peaxi162Scf00310g00017 Petunia axillaris HOM05D000576 ORTHO05D000368 1.7e-08 62.8 92 37.0
CAN.G1261.4 Capsicum annuum HOM05D000576 ORTHO05D000368 2.2e-08 62.4 93 33.3
FAN09G1828 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.2e-08 62.4 87 40.2
PGSC0003DMG402009486 Solanum tuberosum HOM05D000576 ORTHO05D000368 2.2e-08 62.4 90 40.0
ECA233G4739 Erigeron canadensis HOM05D000576 ORTHO05D000368 3.7e-08 61.6 91 38.5
Migut.G00964 Erythranthe guttata HOM05D000576 ORTHO05D000368 3.7e-08 61.6 93 38.7
FAN10G0775 Fragaria x ananassa HOM05D000576 ORTHO05D008832 3.7e-08 61.6 89 43.8
FAN14G3375 Fragaria x ananassa HOM05D000576 ORTHO05D000368 3.7e-08 61.6 86 41.9
Lj1A70T15 Lonicera japonica HOM05D000576 ORTHO05D000368 3.7e-08 61.6 90 37.8
Prupe.7G069300 Prunus persica HOM05D000576 ORTHO05D000368 3.7e-08 61.6 88 40.9
Cc10_g03840 Coffea canephora HOM05D000576 ORTHO05D000368 4.8e-08 61.2 88 43.2
FAN14G0572 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.8e-08 61.2 86 39.5
FvH4_6g01230 Fragaria vesca HOM05D000576 ORTHO05D000368 6.3e-08 60.8 88 40.9
Nitab4.5_0000099g0260 Nicotiana tabacum HOM05D000576 ORTHO05D000368 6.3e-08 60.8 92 35.9
CAN.G617.7 Capsicum annuum HOM05D000576 ORTHO05D000368 8.2e-08 60.5 92 41.3
Migut.F01284 Erythranthe guttata HOM05D000576 ORTHO05D000368 8.2e-08 60.5 90 40.0
TAR636G3326 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.1e-07 60.1 76 40.8
Migut.C00187 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.4e-07 59.7 88 39.8
Migut.J00208 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.4e-07 59.7 93 39.8
COL.COLO4_27089 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.8e-07 59.3 85 40.0
Prupe.5G083600 Prunus persica HOM05D000576 ORTHO05D000368 1.8e-07 59.3 91 35.2
RcHm_v2.0_Chr7g0184481 Rosa chinensis HOM05D000576 ORTHO05D000368 1.8e-07 59.3 90 36.7
FAN01G0824 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.4e-07 58.9 91 38.5
FAN02G3362 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.4e-07 58.9 91 37.4
Migut.J00168 Erythranthe guttata HOM05D000576 ORTHO05D000368 3.1e-07 58.5 90 35.6
Migut.N02494 Erythranthe guttata HOM05D000576 ORTHO05D000368 3.1e-07 58.5 83 42.2
Migut.J00156 Erythranthe guttata HOM05D000576 ORTHO05D013658 4.1e-07 58.2 88 37.5
Hma1.2p1_0108F.1_g052030 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 4.1e-07 58.2 89 40.4
Nitab4.5_0008827g0010 Nicotiana tabacum HOM05D000576 ORTHO05D000368 4.1e-07 58.2 92 37.0
Cc10_g03770 Coffea canephora HOM05D000576 ORTHO05D000368 5.3e-07 57.8 98 38.8
TAR371G0526 Trochodendron aralioides HOM05D000576 ORTHO05D000368 5.3e-07 57.8 89 38.2
COL.COLO4_22884 Corchorus olitorius HOM05D000576 ORTHO05D000368 6.9e-07 57.4 72 40.3
Migut.J00162 Erythranthe guttata HOM05D000576 ORTHO05D000368 6.9e-07 57.4 87 36.8
FAN09G4026 Fragaria x ananassa HOM05D000576 ORTHO05D000368 6.9e-07 57.4 104 35.6
QL10p004689 Quercus lobata HOM05D000576 ORTHO05D000368 6.9e-07 57.4 87 40.2
Eucgr.A02104 Eucalyptus grandis HOM05D000576 ORTHO05D016187 9.1e-07 57.0 84 40.5
FAN17G0971 Fragaria x ananassa HOM05D000615 ORTHO05D000447 9.1e-07 57.0 89 37.1
Rhsim07G0244200 Rhododendron simsii HOM05D000576 ORTHO05D000368 9.1e-07 57.0 90 38.9
Dinv11146 Davidia involucrata HOM05D000576 ORTHO05D000368 1.2e-06 56.6 94 34.0
Migut.J00273 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.2e-06 56.6 88 34.1
TWI63G0014 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 1.2e-06 56.6 71 45.1
Eucgr.A01965 Eucalyptus grandis HOM05D000576 ORTHO05D000368 1.5e-06 56.2 85 40.0
MD11G1200500 Malus domestica HOM05D000576 ORTHO05D000368 1.5e-06 56.2 65 46.2
FAN12G3004 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.0e-06 55.8 81 39.5
Lj7A195T11 Lonicera japonica HOM05D000576 ORTHO05D000368 2.0e-06 55.8 85 38.8
PGSC0003DMG400010328 Solanum tuberosum HOM05D000576 ORTHO05D000368 2.0e-06 55.8 92 40.2
Cc11_g02250 Coffea canephora HOM05D000576 ORTHO05D000368 2.6e-06 55.5 90 36.7
Migut.G00965 Erythranthe guttata HOM05D000576 ORTHO05D000368 2.6e-06 55.5 93 35.5
SGA_v2.0_scaffold70G23622 Striga asiatica HOM05D000576 ORTHO05D000368 2.6e-06 55.5 84 35.7
FAN14G4441 Fragaria x ananassa HOM05D000576 ORTHO05D000368 3.4e-06 55.1 96 35.4
PGSC0003DMG400017941 Solanum tuberosum HOM05D000576 ORTHO05D000368 3.4e-06 55.1 92 39.1
TWI18G0117 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 3.4e-06 55.1 45 55.6
TWI18G0229 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 3.4e-06 55.1 45 55.6
Migut.J00163 Erythranthe guttata HOM05D000576 ORTHO05D000368 4.5e-06 54.7 94 36.2
Migut.J00790 Erythranthe guttata HOM05D000576 ORTHO05D000368 4.5e-06 54.7 90 35.6
Migut.I00397 Erythranthe guttata HOM05D000576 ORTHO05D000368 5.9e-06 54.3 90 33.3
Migut.J00212 Erythranthe guttata HOM05D000576 ORTHO05D013658 7.7e-06 53.9 56 46.4
Migut.J01178 Erythranthe guttata HOM05D000576 ORTHO05D000368 7.7e-06 53.9 91 38.5
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 7.7e-06 53.9 89 33.7
RcHm_v2.0_Chr2g0105201 Rosa chinensis HOM05D000576 ORTHO05D000368 7.7e-06 53.9 93 38.7


User provided reference genes

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