Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0330001 Rosa chinensis HOM05D008657 ORTHO05D010869 2.1e-190 669.8 392 100.0
FAN10G0285 Fragaria x ananassa HOM05D008657 ORTHO05D010869 4.9e-123 446.0 382 75.9
FAN06G4111 Fragaria x ananassa HOM05D008657 ORTHO05D010869 1.2e-105 388.3 387 68.5
FvH4_7g04580 Fragaria vesca HOM05D008657 ORTHO05D010869 6.0e-105 386.0 387 68.2
Prupe.2G051600 Prunus persica HOM05D008657 ORTHO05D010869 4.8e-102 376.3 326 72.7
FAN01G0963 Fragaria x ananassa HOM05D008657 ORTHO05D010869 2.5e-90 337.4 396 62.4
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 2.6e-87 327.4 324 63.9
ClCG07G005030 Citrullus lanatus HOM05D008657 ORTHO05D010869 2.7e-81 307.4 361 52.6
CsaV3_5G029290 Cucumis sativus L. HOM05D008657 ORTHO05D010869 2.2e-78 297.7 363 52.1
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.0e-75 288.9 323 57.6
MELO3C011779.2 Cucumis melo HOM05D008657 ORTHO05D010869 1.3e-75 288.5 347 51.3
CANSAT56G3352 Cannabis sativa HOM05D008657 ORTHO05D010869 3.0e-72 277.3 326 59.8
Cpa.g.sc33.145 Carica papaya HOM05D008657 ORTHO05D010869 9.7e-71 272.3 333 58.3
FAN03G0499 Fragaria x ananassa HOM05D008657 ORTHO05D010869 6.3e-70 269.6 194 73.2
COL.COLO4_28899 Corchorus olitorius HOM05D008657 ORTHO05D010869 3.5e-68 263.8 331 58.9
Lj3C333T3 Lonicera japonica HOM05D008657 ORTHO05D010869 3.5e-68 263.8 326 59.5
Actinidia03250 Actinidia chinensis HOM05D008657 ORTHO05D010869 4.5e-68 263.5 323 59.4
Sed0024339 Sechium edule HOM05D008657 ORTHO05D010869 1.0e-67 262.3 325 44.6
TAR376G1027 Trochodendron aralioides HOM05D008657 ORTHO05D010869 2.7e-65 254.2 323 60.1
C07p02910 Brassica napus HOM05D008657 ORTHO05D010869 1.6e-60 238.4 351 42.5
BolC7t40688H Brassica oleracea HOM05D008657 ORTHO05D010869 3.5e-60 237.3 351 42.2
A07p01450 Brassica napus HOM05D008657 ORTHO05D010869 5.9e-60 236.5 349 42.1
BcaB03g16718 Brassica carinata HOM05D008657 ORTHO05D010869 8.5e-59 232.6 348 37.4
Aa31LG8G16330 Aethionema arabicum HOM05D008657 ORTHO05D010869 1.5e-58 231.9 307 53.4
Carub.0003s3351 Capsella rubella HOM05D008657 ORTHO05D010869 8.0e-57 226.1 317 51.4
BcaC06g36560 Brassica carinata HOM05D008657 ORTHO05D010869 1.8e-56 224.9 344 41.9
BraA07t27942Z Brassica rapa HOM05D008657 ORTHO05D010869 5.2e-56 223.4 344 41.6
AT2G19280 Arabidopsis thaliana HOM05D008657 ORTHO05D010869 1.5e-55 221.9 321 51.7
AL3G49010 Arabidopsis lyrata HOM05D008657 ORTHO05D010869 7.5e-55 219.5 347 47.6
Thhalv10023028m.g Eutrema salsugineum HOM05D008657 ORTHO05D010869 1.3e-54 218.8 311 39.2
PGR031G0953 Punica granatum HOM05D008657 ORTHO05D010869 6.3e-54 216.5 298 56.7
Sp3g32660 Schrenkiella parvula HOM05D008657 ORTHO05D010869 1.1e-53 215.7 323 51.1
CARHR109740 Cardamine hirsuta HOM05D008657 ORTHO05D010869 3.1e-53 214.2 323 52.6
Sc08g0000170 Simmondsia chinensis HOM05D008657 ORTHO05D010869 3.1e-53 214.2 337 43.0
Hund22231 Selenicereus undatus HOM05D008657 ORTHO05D010869 4.5e-52 210.3 323 52.3
DCAR_018350 Daucus carota HOM05D008657 ORTHO05D010869 2.0e-44 184.9 371 43.7
Thecc.10G128900 Theobroma cacao HOM05D008657 ORTHO05D010869 6.8e-40 169.9 322 50.0
Gohir.A06G171100 Gossypium hirsutum HOM05D008657 ORTHO05D010869 5.8e-39 166.8 336 46.1
Gorai.010G208900 Gossypium raimondii HOM05D008657 ORTHO05D010869 4.9e-38 163.7 378 43.4
Eucgr.G03180 Eucalyptus grandis HOM05D008657 ORTHO05D010869 7.8e-36 156.4 231 39.0
Oeu052822.1 Olea europaea HOM05D008657 ORTHO05D010869 7.3e-34 149.8 238 57.1
Lj3A303T33 Lonicera japonica HOM05D008657 ORTHO05D010869 1.2e-33 149.1 227 41.9
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 2.2e-14 85.1 244 27.5
Gohir.D06G179000 Gossypium hirsutum HOM05D008657 ORTHO05D010869 1.2e-12 79.3 206 48.5
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 1.7e-11 75.5 193 26.4
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 3.0e-11 74.7 196 27.0
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 8.7e-11 73.2 175 30.3
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 3.3e-10 71.2 180 27.2
Phvul.003G017200 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 3.3e-10 71.2 194 26.3
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 5.6e-10 70.5 241 25.3
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 5.6e-10 70.5 179 27.4
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.3e-09 69.3 194 25.8
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 1.3e-09 69.3 178 27.5
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 3.6e-09 67.8 189 25.4
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 6.2e-09 67.0 189 25.9
Thecc.06G215000 Theobroma cacao HOM05D007956 ORTHO05D010152 8.1e-09 66.6 238 23.5
Oeu004640.1 Olea europaea HOM05D007595 ORTHO05D009570 1.1e-08 66.2 287 38.0
HPP92_001923 Vanilla planifolia HOM05D007455 ORTHO05D009431 1.1e-08 66.2 154 26.0
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 1.4e-08 65.9 242 24.0
ATR0829G190 Amborella trichopoda HOM05D007291 ORTHO05D009038 1.4e-08 65.9 167 31.7
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.4e-08 65.9 245 24.5
RcHm_v2.0_Chr5g0003911 Rosa chinensis HOM05D007956 ORTHO05D010152 1.4e-08 65.9 206 24.3
Atru.chr13.2096 Acer truncatum HOM05D007291 ORTHO05D009038 1.8e-08 65.5 185 28.6
Actinidia18161 Actinidia chinensis HOM05D008483 ORTHO05D010726 1.8e-08 65.5 148 31.1
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 1.8e-08 65.5 207 27.5
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 2.4e-08 65.1 167 30.5
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 3.1e-08 64.7 199 27.1
Rhsim08G0018600 Rhododendron simsii HOM05D001542 ORTHO05D001416 3.1e-08 64.7 206 26.2
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 4.0e-08 64.3 163 26.4
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.0e-08 64.3 287 22.6
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 5.3e-08 63.9 192 25.0
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 6.9e-08 63.5 191 25.1
SalBow4G0419 Salvia bowleyana HOM05D007455 ORTHO05D009431 9.0e-08 63.2 258 23.6
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.2e-07 62.8 197 25.9
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 1.2e-07 62.8 163 26.4
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 2.0e-07 62.0 167 29.9
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 3.4e-07 61.2 186 26.3
VMungo0464G1987 Vigna mungo HOM05D007358 ORTHO05D009117 3.4e-07 61.2 189 24.9
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 4.5e-07 60.8 186 25.8
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 4.5e-07 60.8 186 26.3
Phvul.002G041300 Phaseolus vulgaris HOM05D007128 ORTHO05D009059 4.5e-07 60.8 195 22.6
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 4.5e-07 60.8 158 27.2
CSS0019242 Camellia sinensis var. sinensis HOM05D008483 ORTHO05D010726 5.8e-07 60.5 193 25.4
CSS0039397 Camellia sinensis var. sinensis HOM05D008483 ORTHO05D010726 5.8e-07 60.5 193 25.4
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 5.8e-07 60.5 105 31.4
Cc07_g13560 Coffea canephora HOM05D007291 ORTHO05D009038 5.8e-07 60.5 134 30.6
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 5.8e-07 60.5 167 26.9
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 5.8e-07 60.5 176 27.8
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 5.8e-07 60.5 178 23.6
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 7.6e-07 60.1 237 22.8
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 7.6e-07 60.1 194 26.3
Manes.01G274800 Manihot esculenta HOM05D007595 ORTHO05D009570 7.6e-07 60.1 215 27.0
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 7.6e-07 60.1 166 24.1
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 9.9e-07 59.7 167 28.7
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.3e-06 59.3 174 25.9
COL.COLO4_12359 Corchorus olitorius HOM05D007595 ORTHO05D009570 1.3e-06 59.3 164 26.8
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 1.3e-06 59.3 194 25.8
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 1.3e-06 59.3 142 25.4
A04p11620 Brassica napus HOM05D007347 ORTHO05D009296 1.7e-06 58.9 132 30.3
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 1.7e-06 58.9 186 26.3
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 1.7e-06 58.9 178 23.6
PGSC0003DMG401014601 Solanum tuberosum HOM05D007291 ORTHO05D009038 1.7e-06 58.9 180 28.3
FvH4_5g24430 Fragaria vesca HOM05D007551 ORTHO05D009424 2.2e-06 58.5 205 25.9
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 2.2e-06 58.5 194 25.3
Nn7g37112 Nelumbo nucifera HOM05D008657 ORTHO05D010869 2.2e-06 58.5 49 53.1
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 2.9e-06 58.2 167 28.7
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 2.9e-06 58.2 167 28.7
BraA04t16830Z Brassica rapa HOM05D007347 ORTHO05D009296 2.9e-06 58.2 132 30.3
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 2.9e-06 58.2 171 26.3
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 2.9e-06 58.2 170 26.5
FAN13G0867 Fragaria x ananassa HOM05D007551 ORTHO05D009424 2.9e-06 58.2 205 25.4
TAR633G1897 Trochodendron aralioides HOM05D007551 ORTHO05D009424 2.9e-06 58.2 196 25.5
CANSAT64G0946 Cannabis sativa HOM05D007291 ORTHO05D009038 3.8e-06 57.8 150 26.7
CARHR175750 Cardamine hirsuta HOM05D002986 ORTHO05D007611 3.8e-06 57.8 186 28.0
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 3.8e-06 57.8 182 26.9
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 3.8e-06 57.8 166 25.9
Sopen05g029730 Solanum pennellii HOM05D007291 ORTHO05D009038 3.8e-06 57.8 180 27.2
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 4.9e-06 57.4 203 24.6
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 4.9e-06 57.4 183 25.7
AT5G55840 Arabidopsis thaliana HOM05D007390 ORTHO05D009114 6.4e-06 57.0 196 24.5
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 6.4e-06 57.0 203 24.6
ClCG09G021340 Citrullus lanatus HOM05D007390 ORTHO05D009114 6.4e-06 57.0 193 25.4
Atru.chr2.3702 Acer truncatum HOM05D007390 ORTHO05D009114 8.4e-06 56.6 176 29.0
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 8.4e-06 56.6 207 24.6
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 8.4e-06 56.6 182 23.6
Duzib151G0548 Durio zibethinus HOM05D007128 ORTHO05D009059 8.4e-06 56.6 199 25.6
HanXRQChr06g0182581 Helianthus annuus HOM05D007455 ORTHO05D009431 8.4e-06 56.6 164 23.2
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 8.4e-06 56.6 269 23.8
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 8.4e-06 56.6 175 25.7
TPR.G8243 Trifolium pratense HOM05D007291 ORTHO05D009038 8.4e-06 56.6 174 23.0


User provided reference genes

Program Settings