Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0329861 Rosa chinensis HOM05D004691 ORTHO05D005552 1.6e-106 389.4 192 100.0
RcHm_v2.0_Chr6g0290451 Rosa chinensis HOM05D004691 ORTHO05D005552 2.6e-77 292.4 192 78.6
FAN24G2920 Fragaria x ananassa HOM05D004691 ORTHO05D005552 4.5e-77 291.6 192 78.1
FvH4_2g23200 Fragaria vesca HOM05D004691 ORTHO05D005552 9.9e-77 290.4 192 77.6
FAN27G3192 Fragaria x ananassa HOM05D004691 ORTHO05D005552 9.9e-77 290.4 192 78.6
Thecc.01G274400 Theobroma cacao HOM05D004691 ORTHO05D005552 6.0e-74 281.2 192 75.0
Lalb_Chr06g0162871 Lupinus albus HOM05D004691 ORTHO05D005552 1.3e-73 280.0 192 75.5
Manes.05G079200 Manihot esculenta HOM05D004691 ORTHO05D005552 1.3e-73 280.0 192 74.5
TPR.G11285 Trifolium pratense HOM05D004691 ORTHO05D005552 1.3e-73 280.0 192 75.0
Medtr1g047130 Medicago truncatula HOM05D004691 ORTHO05D005552 2.3e-73 279.3 192 74.0
Ca_01504_v3 Cicer arietinum L. HOM05D004691 ORTHO05D005552 3.0e-73 278.9 192 74.0
Duzib138G0407 Durio zibethinus HOM05D004691 ORTHO05D005552 3.0e-73 278.9 192 73.4
Prupe.1G577100 Prunus persica HOM05D004691 ORTHO05D005552 3.0e-73 278.9 192 75.5
Prupe.8G237600 Prunus persica HOM05D004691 ORTHO05D005552 3.0e-73 278.9 192 75.0
CANSAT25G2296 Cannabis sativa HOM05D004691 ORTHO05D005552 5.1e-73 278.1 192 71.9
Lj2A1168T23 Lonicera japonica HOM05D004691 ORTHO05D005552 6.7e-73 277.7 192 73.4
Potri.004G062600 Populus trichocarpa HOM05D004691 ORTHO05D005552 6.7e-73 277.7 192 72.9
Cpa.g.sc52.60 Carica papaya HOM05D004691 ORTHO05D005552 8.7e-73 277.3 192 74.0
MD11G1281700 Malus domestica HOM05D004691 ORTHO05D005552 1.1e-72 276.9 192 75.0
Gohir.D12G003600 Gossypium hirsutum HOM05D004691 ORTHO05D005552 1.5e-72 276.6 192 73.4
Gorai.008G003400 Gossypium raimondii HOM05D004691 ORTHO05D005552 1.5e-72 276.6 192 73.4
Lj9A529T34 Lonicera japonica HOM05D004691 ORTHO05D005552 1.9e-72 276.2 192 72.9
MD03G1261300 Malus domestica HOM05D004691 ORTHO05D005552 1.9e-72 276.2 192 74.5
COL.COLO4_11872 Corchorus olitorius HOM05D004691 ORTHO05D005552 2.5e-72 275.8 192 74.0
Sabra04G0041500 Salix brachista HOM05D004691 ORTHO05D005552 2.5e-72 275.8 192 73.4
VMungo0647G0910 Vigna mungo HOM05D004691 ORTHO05D005552 3.3e-72 275.4 192 74.0
PGR119G1056 Punica granatum HOM05D004691 ORTHO05D005552 4.3e-72 275.0 192 72.4
PGR119G1812 Punica granatum HOM05D004691 ORTHO05D005552 4.3e-72 275.0 192 72.4
Ciclev10022626m.g Citrus clementina HOM05D004691 ORTHO05D005552 5.6e-72 274.6 192 72.4
TPR.G13465 Trifolium pratense HOM05D004691 ORTHO05D005552 5.6e-72 274.6 192 74.0
Phvul.001G053600 Phaseolus vulgaris HOM05D004691 ORTHO05D005552 7.4e-72 274.2 192 73.4
Glyma.17G206800 Glycine max HOM05D004691 ORTHO05D005552 9.6e-72 273.9 192 72.9
RcHm_v2.0_Chr1g0329981 Rosa chinensis HOM05D004691 ORTHO05D005552 9.6e-72 273.9 185 76.8
AL6G34810 Arabidopsis lyrata HOM05D004691 ORTHO05D005552 1.6e-71 273.1 192 72.9
AT5G23535 Arabidopsis thaliana HOM05D004691 ORTHO05D005552 1.6e-71 273.1 192 72.9
Glyma.07G180400 Glycine max HOM05D004691 ORTHO05D005552 1.6e-71 273.1 192 73.4
Sp2g23660 Schrenkiella parvula HOM05D004691 ORTHO05D005552 1.6e-71 273.1 192 72.9
Thhalv10005052m.g Eutrema salsugineum HOM05D004691 ORTHO05D005552 2.1e-71 272.7 192 72.9
CARHR189990 Cardamine hirsuta HOM05D004691 ORTHO05D005552 3.7e-71 271.9 192 72.4
Cfa006171 Carpinus fangiana HOM05D004691 ORTHO05D005552 3.7e-71 271.9 192 72.4
Phvul.001G054100 Phaseolus vulgaris HOM05D004691 ORTHO05D005552 3.7e-71 271.9 192 72.9
BcaB04g19862 Brassica carinata HOM05D004691 ORTHO05D005552 4.8e-71 271.6 192 72.4
BcaC04g23501 Brassica carinata HOM05D004691 ORTHO05D005552 4.8e-71 271.6 192 72.4
A06p34500 Brassica napus HOM05D004691 ORTHO05D005552 4.8e-71 271.6 192 72.4
A09p06900 Brassica napus HOM05D004691 ORTHO05D005552 4.8e-71 271.6 192 72.4
C07p44050 Brassica napus HOM05D004691 ORTHO05D005552 4.8e-71 271.6 192 72.4
C09p07630 Brassica napus HOM05D004691 ORTHO05D005552 4.8e-71 271.6 192 72.4
BolC9t53681H Brassica oleracea HOM05D004691 ORTHO05D005552 4.8e-71 271.6 192 72.4
BraA06t26378Z Brassica rapa HOM05D004691 ORTHO05D005552 4.8e-71 271.6 192 72.4
BraA09t36337Z Brassica rapa HOM05D004691 ORTHO05D005552 4.8e-71 271.6 192 72.4
MELO3C014296.2 Cucumis melo HOM05D004691 ORTHO05D005552 4.8e-71 271.6 192 72.4
Dinv34779 Davidia involucrata HOM05D004691 ORTHO05D005552 4.8e-71 271.6 192 70.8
BolC7t44929H Brassica oleracea HOM05D004691 ORTHO05D005552 6.2e-71 271.2 192 71.9
CiPaw.08G107800 Carya illinoinensis HOM05D004691 ORTHO05D005552 6.2e-71 271.2 192 71.9
CsaV3_2G013570 Cucumis sativus L. HOM05D004691 ORTHO05D005552 6.2e-71 271.2 192 71.4
AL4G15050 Arabidopsis lyrata HOM05D004691 ORTHO05D005552 8.2e-71 270.8 192 72.4
Carub.0006s2131 Capsella rubella HOM05D004691 ORTHO05D005552 8.2e-71 270.8 192 72.4
Hma1.2p1_0667F.1_g199750 Hydrangea macrophylla HOM05D004691 ORTHO05D005552 8.2e-71 270.8 192 71.4
Dinv32905 Davidia involucrata HOM05D004691 ORTHO05D005552 1.1e-70 270.4 192 71.4
CSS0029439 Camellia sinensis var. sinensis HOM05D004691 ORTHO05D005552 1.4e-70 270.0 192 70.3
PSO761G0020 Papaver somniferum HOM05D004691 ORTHO05D005552 1.4e-70 270.0 192 70.8
HanXRQChr08g0213401 Helianthus annuus HOM05D004691 ORTHO05D005552 1.8e-70 269.6 192 70.8
Sc17g0001280 Simmondsia chinensis HOM05D004691 ORTHO05D005552 1.8e-70 269.6 192 71.4
Aa31LG11G2940 Aethionema arabicum HOM05D004691 ORTHO05D005552 2.4e-70 269.2 192 71.9
Hund12255 Selenicereus undatus HOM05D004691 ORTHO05D005552 2.4e-70 269.2 192 70.3
Cc08_g05170 Coffea canephora HOM05D004691 ORTHO05D005552 3.1e-70 268.9 192 69.8
Migut.A00557 Erythranthe guttata HOM05D004691 ORTHO05D005552 3.1e-70 268.9 192 69.8
Rhsim13G0027100 Rhododendron simsii HOM05D004691 ORTHO05D005552 3.1e-70 268.9 192 70.8
TWI18G0899 Tripterygium wilfordii HOM05D004691 ORTHO05D005552 4.0e-70 268.5 192 69.3
Lj1g0022890 Lotus japonicus HOM05D004691 ORTHO05D005552 5.3e-70 268.1 192 70.3
PSO210G7297 Papaver somniferum HOM05D004691 ORTHO05D005552 5.3e-70 268.1 192 70.3
ClCG07G000390 Citrullus lanatus HOM05D004691 ORTHO05D005552 6.9e-70 267.7 188 72.9
THA.LOC104823041 Tarenaya hassleriana HOM05D004691 ORTHO05D005552 9.0e-70 267.3 192 71.9
unitig_748.g8144 Utricularia gibba HOM05D004691 ORTHO05D005552 9.0e-70 267.3 192 69.8
arahy.Tifrunner.gnm1.ann1.3Q9Y1V Arachis hypogaea HOM05D004691 ORTHO05D005552 1.2e-69 266.9 192 71.4
arahy.Tifrunner.gnm1.ann1.GXX04Y Arachis hypogaea HOM05D004691 ORTHO05D005552 1.2e-69 266.9 192 71.4
SGA_v2.0_scaffold96G29067 Striga asiatica HOM05D004691 ORTHO05D005552 1.2e-69 266.9 192 69.3
TWI75G0960 Tripterygium wilfordii HOM05D004691 ORTHO05D005552 1.2e-69 266.9 198 68.7
arahy.Tifrunner.gnm1.ann1.DJ1VY2 Arachis hypogaea HOM05D004691 ORTHO05D005552 1.5e-69 266.5 192 71.4
Haze_24303 Corylus avellana HOM05D004691 ORTHO05D005552 1.5e-69 266.5 235 62.6
PSO675G3171 Papaver somniferum HOM05D004691 ORTHO05D005552 1.5e-69 266.5 192 69.3
CANSAT80G0426 Cannabis sativa HOM05D004691 ORTHO05D005552 2.6e-69 265.8 192 68.2
ECA248G3453 Erigeron canadensis HOM05D004691 ORTHO05D005552 3.4e-69 265.4 192 69.8
Aqoxy5G00433 Aquilegia oxysepala HOM05D004691 ORTHO05D005552 4.5e-69 265.0 192 69.8
Eucgr.K03344 Eucalyptus grandis HOM05D004691 ORTHO05D005552 4.5e-69 265.0 192 69.8
PSO017G2306 Papaver somniferum HOM05D004691 ORTHO05D005552 4.5e-69 265.0 192 68.8
GSVIVG01001184001 Vitis vinifera HOM05D004691 ORTHO05D005552 4.5e-69 265.0 192 70.3
arahy.Tifrunner.gnm1.ann1.2S5JQC Arachis hypogaea HOM05D004691 ORTHO05D005552 5.8e-69 264.6 192 70.8
Sed0017796 Sechium edule HOM05D004691 ORTHO05D005552 7.6e-69 264.2 192 69.8
TAR260G0003 Trochodendron aralioides HOM05D004691 ORTHO05D005552 1.3e-68 263.5 192 69.3
vmacro02596 Vaccinium macrocarpon HOM05D004691 ORTHO05D005552 1.3e-68 263.5 192 69.8
DCAR_002717 Daucus carota HOM05D004691 ORTHO05D005552 2.2e-68 262.7 192 69.3
DCAR_018435 Daucus carota HOM05D004691 ORTHO05D005552 2.2e-68 262.7 192 68.2
EL10Ac4g08388 Beta vulgaris HOM05D004691 ORTHO05D005552 4.9e-68 261.5 192 67.2
SalBow4G0422 Salvia bowleyana HOM05D004691 ORTHO05D005552 6.5e-68 261.2 200 66.0
Lj3A731T61 Lonicera japonica HOM05D004691 ORTHO05D005552 8.4e-68 260.8 192 68.2
CDE04G1639 Ceratophyllum demersum HOM05D004691 ORTHO05D005552 2.5e-67 259.2 192 67.7
Solyc08g075850.3 Solanum lycopersicum HOM05D004691 ORTHO05D005552 2.5e-67 259.2 192 67.2
Sopen08g024490 Solanum pennellii HOM05D004691 ORTHO05D005552 2.5e-67 259.2 192 67.2
PGSC0003DMG400030873 Solanum tuberosum HOM05D004691 ORTHO05D005552 2.5e-67 259.2 192 67.2
ATR0787G203 Amborella trichopoda HOM05D004691 ORTHO05D005552 3.2e-67 258.8 192 67.7
SGA_v2.0_scaffold89G27398 Striga asiatica HOM05D004691 ORTHO05D005552 5.5e-67 258.1 194 67.5
Nitab4.5_0000108g0400 Nicotiana tabacum HOM05D004691 ORTHO05D005552 7.1e-67 257.7 192 67.7
Peaxi162Scf00408g00833 Petunia axillaris HOM05D004691 ORTHO05D005552 1.6e-66 256.5 192 66.7
Glyma.02G145800 Glycine max HOM05D004691 ORTHO05D005552 1.0e-65 253.8 192 68.8
Lj5g0022765 Lotus japonicus HOM05D004691 ORTHO05D005552 1.0e-65 253.8 192 68.2
Sed0022085 Sechium edule HOM05D004691 ORTHO05D005552 2.3e-65 252.7 216 62.0
Lsat_1_v5_gn_5_187201 Lactuca sativa HOM05D004691 ORTHO05D005552 5.1e-65 251.5 186 69.4
FAN20G3100 Fragaria x ananassa HOM05D004691 ORTHO05D005552 1.1e-64 250.4 192 71.4
Os11g0139100 Oryza sativa ssp. japonica HOM05D004691 ORTHO05D005552 1.1e-64 250.4 192 66.1
EL10Ac4g08386 Beta vulgaris HOM05D004691 ORTHO05D005552 3.3e-64 248.8 218 59.2
PGSC0003DMG400017984 Solanum tuberosum HOM05D004691 ORTHO05D005552 4.3e-64 248.4 192 66.1
Os12g0135900 Oryza sativa ssp. japonica HOM05D004691 ORTHO05D005552 1.3e-63 246.9 192 65.6
Zm00001eb196350 Zea mays HOM05D004691 ORTHO05D005552 2.2e-63 246.1 192 66.1
Nitab4.5_0003992g0020 Nicotiana tabacum HOM05D004691 ORTHO05D005552 4.8e-63 245.0 192 64.1
QL02p011400 Quercus lobata HOM05D004691 ORTHO05D005552 8.2e-63 244.2 249 55.0
EL10Ac2g03130 Beta vulgaris HOM05D004691 ORTHO05D005552 2.4e-62 242.7 218 58.3
SEGI_08900 Sequoiadendron giganteum HOM05D004691 ORTHO05D005552 2.2e-60 236.1 192 61.5
Hma1.2p1_0525F.1_g172750 Hydrangea macrophylla HOM05D004691 ORTHO05D005552 8.5e-60 234.2 262 51.9
Lsat_1_v5_gn_9_49380 Lactuca sativa HOM05D004691 ORTHO05D005552 8.8e-57 224.2 172 66.9
Nn1g02379 Nelumbo nucifera HOM05D004691 ORTHO05D005552 5.7e-56 221.5 164 68.9
Ah.10g032130 Amaranthus hybridus HOM05D004691 ORTHO05D005552 1.5e-53 213.4 194 59.8
AUR62018176 Chenopodium quinoa HOM05D004691 ORTHO05D005552 2.0e-53 213.0 183 63.4
Gorai.007G138900 Gossypium raimondii HOM05D004691 ORTHO05D005552 4.5e-53 211.8 159 70.4
CAN.G1427.9 Capsicum annuum HOM05D004691 ORTHO05D005552 1.0e-52 210.7 164 64.0
Actinidia00785 Actinidia chinensis HOM05D004691 ORTHO05D005552 2.2e-52 209.5 192 58.9
HPP92_004579 Vanilla planifolia HOM05D004691 ORTHO05D005552 2.9e-52 209.1 185 60.0
Gohir.D11G129800 Gossypium hirsutum HOM05D004691 ORTHO05D005552 8.5e-52 207.6 159 69.2
Nitab4.5_0002485g0080 Nicotiana tabacum HOM05D004691 ORTHO05D005552 3.2e-51 205.7 192 56.8
HanXRQChr01g0009931 Helianthus annuus HOM05D004691 ORTHO05D005552 7.2e-51 204.5 159 66.7
Psat6g047600 Pisum sativum HOM05D004691 ORTHO05D005552 1.6e-50 203.4 192 60.4
AUR62038661 Chenopodium quinoa HOM05D004691 ORTHO05D005552 1.8e-49 199.9 192 55.2
SalBow8G2642 Salvia bowleyana HOM05D004691 ORTHO05D005552 5.7e-48 194.9 164 62.2
Oeu017325.1 Olea europaea HOM05D004691 ORTHO05D005552 2.2e-47 193.0 108 85.2
Pp3c2_11670 Physcomitrium patens HOM05D004691 ORTHO05D005552 1.7e-44 183.3 192 50.5
Duzib133G0007 Durio zibethinus HOM05D004691 ORTHO05D005552 3.8e-44 182.2 135 68.1
AagrBONN_evm.TU.Sc2ySwM_117.3924 Anthoceros agrestis HOM05D004691 ORTHO05D005552 4.1e-38 162.2 169 50.9
Mapoly0064s0052 Marchantia polymorpha HOM05D004691 ORTHO05D005552 4.1e-38 162.2 187 44.9
Gohir.A12G003900 Gossypium hirsutum HOM05D004691 ORTHO05D005552 1.1e-35 154.1 119 67.2
TAR362G0310 Trochodendron aralioides HOM05D004691 ORTHO05D005552 2.7e-34 149.4 123 65.9
MCO13G165 Micromonas commoda HOM05D004691 ORTHO05D005552 5.9e-29 131.7 177 37.9
CBR_g54238 Chara braunii HOM05D004691 ORTHO05D005552 1.4e-25 120.6 186 40.3
SMO347G0488 Selaginella moellendorffii HOM05D004691 ORTHO05D005552 2.8e-23 112.8 189 37.6
Oeu046808.1 Olea europaea HOM05D004691 ORTHO05D005552 2.4e-22 109.8 168 43.5
Psat6g046920 Pisum sativum HOM05D004691 ORTHO05D005552 1.0e-20 104.4 97 57.7
FvH4_2g22413 Fragaria vesca HOM05D004691 ORTHO05D005552 1.5e-19 100.5 56 85.7
Oeu037306.1 Olea europaea HOM05D004691 ORTHO05D005552 6.1e-18 95.1 56 75.0
Cre07.g330450 Chlamydomonas reinhardtii HOM05D004691 ORTHO05D005552 3.1e-14 82.8 183 32.8
RcHm_v2.0_Chr7g0235701 Rosa chinensis HOM05D004691 ORTHO05D005552 3.8e-12 75.9 41 82.9
CSS0025047 Camellia sinensis var. sinensis HOM05D004691 ORTHO05D005552 9.5e-11 71.2 60 58.3
CSS0006769 Camellia sinensis var. sinensis HOM05D004691 ORTHO05D005552 2.8e-10 69.7 68 52.9
SMO356G0620 Selaginella moellendorffii HOM05D006094 ORTHO05D007761 7.5e-08 61.6 155 31.6
Cre16.g652550 Chlamydomonas reinhardtii HOM05D006094 ORTHO05D007761 9.8e-08 61.2 129 34.9
Thecc.01G231900 Theobroma cacao HOM05D004691 ORTHO05D005552 1.7e-07 60.5 43 67.4
MD05G1236100 Malus domestica HOM05D000071 ORTHO05D000029 3.7e-07 59.3 82 45.1
unitig_0.g2378 Utricularia gibba HOM05D006094 ORTHO05D007761 1.4e-06 57.4 136 30.9
ATR1088G047 Amborella trichopoda HOM05D006094 ORTHO05D007761 1.9e-06 57.0 132 34.1
MBI19_g03677_MAGBIO Magnolia biondii HOM05D006094 ORTHO05D007761 1.9e-06 57.0 135 30.4
QL08p014044 Quercus lobata HOM05D006094 ORTHO05D007761 1.9e-06 57.0 132 31.1
TWI38G1667 Tripterygium wilfordii HOM05D006094 ORTHO05D007761 2.4e-06 56.6 135 30.4
Os06g0683200 Oryza sativa ssp. japonica HOM05D006094 ORTHO05D007761 3.2e-06 56.2 125 29.6
Pp3c15_17530 Physcomitrium patens HOM05D006094 ORTHO05D007761 3.2e-06 56.2 135 28.9
Sc03g0009180 Simmondsia chinensis HOM05D006094 ORTHO05D007761 3.2e-06 56.2 126 31.0
AT5G54600 Arabidopsis thaliana HOM05D006094 ORTHO05D007761 4.1e-06 55.8 139 27.3
AUR62034219 Chenopodium quinoa HOM05D006094 ORTHO05D007761 4.1e-06 55.8 145 31.0
Migut.H01870 Erythranthe guttata HOM05D006094 ORTHO05D007761 4.1e-06 55.8 126 27.8
SEGI_26346 Sequoiadendron giganteum HOM05D006094 ORTHO05D007761 4.1e-06 55.8 145 26.9
PRCOL_00005792 Prasinoderma coloniale HOM05D004691 ORTHO05D005552 5.4e-06 55.5 172 25.0
THA.LOC104809288 Tarenaya hassleriana HOM05D006094 ORTHO05D007761 5.4e-06 55.5 135 29.6
CiPaw.11G182300 Carya illinoinensis HOM05D006094 ORTHO05D007761 7.0e-06 55.1 126 30.2
Haze_09585 Corylus avellana HOM05D006094 ORTHO05D007761 7.0e-06 55.1 157 29.3
Hma1.2p1_1054F.1_g252540 Hydrangea macrophylla HOM05D006094 ORTHO05D007761 7.0e-06 55.1 135 28.9
PGR031G3561 Punica granatum HOM05D006094 ORTHO05D007761 7.0e-06 55.1 148 27.0
Sabra16G0282000 Salix brachista HOM05D006094 ORTHO05D007761 7.0e-06 55.1 132 30.3
SalBow7G2145 Salvia bowleyana HOM05D006094 ORTHO05D007761 7.0e-06 55.1 126 27.8
Zm00001eb225380 Zea mays HOM05D006094 ORTHO05D007761 7.0e-06 55.1 125 29.6
Cfa020459 Carpinus fangiana HOM05D006094 ORTHO05D007761 9.2e-06 54.7 151 28.5
CBR_g8903 Chara braunii HOM05D006094 ORTHO05D007761 9.2e-06 54.7 115 36.5
Eucgr.F03416 Eucalyptus grandis HOM05D006094 ORTHO05D007761 9.2e-06 54.7 135 28.9
Lsat_1_v5_gn_9_94980 Lactuca sativa HOM05D006094 ORTHO05D007761 9.2e-06 54.7 135 28.1
Pp3c9_9200 Physcomitrium patens HOM05D006094 ORTHO05D007761 9.2e-06 54.7 135 28.1


User provided reference genes

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