Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0328971 Rosa chinensis HOM05D002764 ORTHO05D002960 2.0e-47 192.2 102 100.0
RcHm_v2.0_Chr2g0116291 Rosa chinensis HOM05D002764 ORTHO05D002960 2.3e-27 125.6 75 92.0
RcHm_v2.0_Chr5g0022461 Rosa chinensis HOM05D002764 ORTHO05D002960 5.9e-20 100.9 58 91.4
FAN16G2462 Fragaria x ananassa HOM05D002764 ORTHO05D002960 5.0e-19 97.8 58 87.9
FAN11G2045 Fragaria x ananassa HOM05D002764 ORTHO05D002960 6.6e-19 97.4 58 87.9
FAN21G1338 Fragaria x ananassa HOM05D002764 ORTHO05D002960 6.6e-19 97.4 58 87.9
RcHm_v2.0_Chr6g0255481 Rosa chinensis HOM05D002764 ORTHO05D002960 1.5e-18 96.3 58 87.9
FvH4_3g13510 Fragaria vesca HOM05D002764 ORTHO05D002960 7.3e-18 94.0 58 86.2
FAN25G1120 Fragaria x ananassa HOM05D002764 ORTHO05D002960 9.5e-18 93.6 58 84.5
Dinv05281 Davidia involucrata HOM05D002764 ORTHO05D002960 8.0e-17 90.5 58 79.3
Ciclev10015913m.g Citrus clementina HOM05D002764 ORTHO05D002960 1.0e-16 90.1 57 82.5
Duzib248G0661 Durio zibethinus HOM05D002764 ORTHO05D002960 2.3e-16 89.0 57 82.5
RcHm_v2.0_Chr6g0246611 Rosa chinensis HOM05D002764 ORTHO05D002960 4.0e-16 88.2 64 75.0
Thecc.02G000300 Theobroma cacao HOM05D002764 ORTHO05D002960 4.0e-16 88.2 57 78.9
TAR627G0266 Trochodendron aralioides HOM05D002764 ORTHO05D002960 4.0e-16 88.2 57 82.5
Nn1g09845 Nelumbo nucifera HOM05D002764 ORTHO05D002960 6.8e-16 87.4 65 70.8
Lj4g0007006 Lotus japonicus HOM05D002764 ORTHO05D002960 8.9e-16 87.0 57 77.2
Prupe.4G123300 Prunus persica HOM05D002764 ORTHO05D002960 1.2e-15 86.7 58 81.0
ATR0721G170 Amborella trichopoda HOM05D002764 ORTHO05D002960 1.5e-15 86.3 57 78.9
ATR0737G018 Amborella trichopoda HOM05D002764 ORTHO05D002960 1.5e-15 86.3 57 78.9
Cc09_g04490 Coffea canephora HOM05D002764 ORTHO05D002960 1.5e-15 86.3 58 77.6
GSVIVG01011697001 Vitis vinifera HOM05D002764 ORTHO05D002960 1.5e-15 86.3 58 77.6
Cfa001171 Carpinus fangiana HOM05D002764 ORTHO05D002960 2.6e-15 85.5 56 80.4
CiPaw.09G141200 Carya illinoinensis HOM05D002764 ORTHO05D002960 3.4e-15 85.1 58 75.9
Glyma.16G094500 Glycine max HOM05D002764 ORTHO05D002960 3.4e-15 85.1 57 75.4
Haze_05179 Corylus avellana HOM05D002764 ORTHO05D002960 4.4e-15 84.7 56 78.6
Glyma.08G264402 Glycine max HOM05D002764 ORTHO05D002960 4.4e-15 84.7 57 75.4
VMungo0251G1067 Vigna mungo HOM05D002764 ORTHO05D002960 4.4e-15 84.7 57 73.7
Gohir.A12G051200 Gossypium hirsutum HOM05D002764 ORTHO05D002960 5.8e-15 84.3 57 77.2
Gohir.D12G049400 Gossypium hirsutum HOM05D002764 ORTHO05D002960 5.8e-15 84.3 57 77.2
Gorai.008G052300 Gossypium raimondii HOM05D002764 ORTHO05D002960 5.8e-15 84.3 57 77.2
Psat4g112480 Pisum sativum HOM05D002764 ORTHO05D002960 5.8e-15 84.3 57 75.4
ClCG01G025980 Citrullus lanatus HOM05D002764 ORTHO05D002960 7.5e-15 84.0 71 67.6
COL.COLO4_25012 Corchorus olitorius HOM05D002764 ORTHO05D002960 7.5e-15 84.0 58 75.9
Lalb_Chr16g0391871 Lupinus albus HOM05D002764 ORTHO05D002960 1.3e-14 83.2 57 73.7
Phvul.003G274500 Phaseolus vulgaris HOM05D002764 ORTHO05D002960 1.3e-14 83.2 57 73.7
arahy.Tifrunner.gnm1.ann1.MDM23I Arachis hypogaea HOM05D002764 ORTHO05D002960 1.7e-14 82.8 57 73.7
arahy.Tifrunner.gnm1.ann1.VK0W6N Arachis hypogaea HOM05D002764 ORTHO05D002960 1.7e-14 82.8 57 73.7
Lj2A340G20 Lonicera japonica HOM05D002764 ORTHO05D002960 1.7e-14 82.8 56 76.8
Medtr8g070640 Medicago truncatula HOM05D002764 ORTHO05D002960 1.7e-14 82.8 57 75.4
CsaV3_6G053200 Cucumis sativus L. HOM05D002764 ORTHO05D002960 2.2e-14 82.4 57 73.7
Hma1.2p1_0082F.1_g042610 Hydrangea macrophylla HOM05D002764 ORTHO05D002960 2.2e-14 82.4 56 76.8
TWI38G0493 Tripterygium wilfordii HOM05D002764 ORTHO05D002960 2.9e-14 82.0 58 74.1
MELO3C006994.2 Cucumis melo HOM05D002764 ORTHO05D002960 3.7e-14 81.6 57 73.7
arahy.Tifrunner.gnm1.ann1.25YVJA Arachis hypogaea HOM05D002764 ORTHO05D002960 4.9e-14 81.3 65 66.2
TWI15G1089 Tripterygium wilfordii HOM05D002764 ORTHO05D002960 6.4e-14 80.9 58 74.1
Aqoxy2G00386 Aquilegia oxysepala HOM05D002764 ORTHO05D002960 8.3e-14 80.5 57 70.2
CANSAT35G1062 Cannabis sativa HOM05D002764 ORTHO05D002960 8.3e-14 80.5 56 75.0
MD10G1221300 Malus domestica HOM05D002764 ORTHO05D002960 8.3e-14 80.5 56 75.0
Manes.16G060600 Manihot esculenta HOM05D002764 ORTHO05D002960 8.3e-14 80.5 57 70.2
AUR62007725 Chenopodium quinoa HOM05D002764 ORTHO05D002960 1.1e-13 80.1 57 73.7
AUR62026563 Chenopodium quinoa HOM05D002764 ORTHO05D002960 1.1e-13 80.1 57 73.7
DCAR_007770 Daucus carota HOM05D002764 ORTHO05D002960 1.4e-13 79.7 55 74.5
Potri.001G073300 Populus trichocarpa HOM05D002764 ORTHO05D002960 1.4e-13 79.7 58 70.7
TPR.G19832 Trifolium pratense HOM05D002764 ORTHO05D002960 1.4e-13 79.7 57 70.2
Rhsim13G0136800 Rhododendron simsii HOM05D002764 ORTHO05D002960 1.8e-13 79.3 57 75.4
Sed0003310 Sechium edule HOM05D002764 ORTHO05D002960 2.4e-13 79.0 57 70.2
QL11p010613 Quercus lobata HOM05D002764 ORTHO05D002960 3.2e-13 78.6 61 67.2
arahy.Tifrunner.gnm1.ann1.P96IG1 Arachis hypogaea HOM05D002764 ORTHO05D002960 4.1e-13 78.2 55 72.7
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 5.4e-13 77.8 54 74.1
Eucgr.E04332 Eucalyptus grandis HOM05D002764 ORTHO05D002960 5.4e-13 77.8 57 70.2
Solyc11g068610.2 Solanum lycopersicum HOM05D002764 ORTHO05D002960 5.4e-13 77.8 57 70.2
Sopen11g027330 Solanum pennellii HOM05D002764 ORTHO05D002960 5.4e-13 77.8 57 70.2
PGSC0003DMG400026351 Solanum tuberosum HOM05D002764 ORTHO05D002960 5.4e-13 77.8 57 70.2
MSTRG.28023 Avicennia marina HOM05D002764 ORTHO05D002960 1.2e-12 76.6 58 63.8
CSS0002485 Camellia sinensis var. sinensis HOM05D002764 ORTHO05D002960 1.2e-12 76.6 58 69.0
Nitab4.5_0006120g0020 Nicotiana tabacum HOM05D002764 ORTHO05D002960 1.2e-12 76.6 58 67.2
vmacro03577 Vaccinium macrocarpon HOM05D002764 ORTHO05D002960 1.2e-12 76.6 57 71.9
Potri.003G157700 Populus trichocarpa HOM05D002764 ORTHO05D002960 1.6e-12 76.3 58 67.2
EL10Ac6g13754 Beta vulgaris HOM05D002764 ORTHO05D002960 2.0e-12 75.9 55 70.9
CDE10G0875 Ceratophyllum demersum HOM05D002764 ORTHO05D002960 2.0e-12 75.9 54 74.1
Migut.N01903 Erythranthe guttata HOM05D002764 ORTHO05D002960 2.0e-12 75.9 57 71.9
Nitab4.5_0004266g0020 Nicotiana tabacum HOM05D002764 ORTHO05D002960 2.0e-12 75.9 56 69.6
Hund21012 Selenicereus undatus HOM05D002764 ORTHO05D002960 2.0e-12 75.9 57 68.4
RcHm_v2.0_Chr6g0255501 Rosa chinensis HOM05D002764 ORTHO05D002960 2.7e-12 75.5 42 92.9
BcaB07g32735 Brassica carinata HOM05D002764 ORTHO05D002960 4.6e-12 74.7 58 58.6
BcaC05g27107 Brassica carinata HOM05D002764 ORTHO05D002960 4.6e-12 74.7 58 58.6
A09p35450 Brassica napus HOM05D002764 ORTHO05D002960 4.6e-12 74.7 58 58.6
C05p29900 Brassica napus HOM05D002764 ORTHO05D002960 4.6e-12 74.7 58 58.6
BolC5t31722H Brassica oleracea HOM05D002764 ORTHO05D002960 4.6e-12 74.7 58 58.6
BraA09t39073Z Brassica rapa HOM05D002764 ORTHO05D002960 4.6e-12 74.7 58 58.6
Sp1g26720 Schrenkiella parvula HOM05D002764 ORTHO05D002960 4.6e-12 74.7 58 58.6
arahy.Tifrunner.gnm1.ann1.EUP4KI Arachis hypogaea HOM05D002764 ORTHO05D002960 6.0e-12 74.3 60 65.0
Peaxi162Scf00040g00214 Petunia axillaris HOM05D002764 ORTHO05D002960 6.0e-12 74.3 58 65.5
Sabra01G0051700 Salix brachista HOM05D002764 ORTHO05D002960 6.0e-12 74.3 58 65.5
BcaB03g13812 Brassica carinata HOM05D002764 ORTHO05D002960 7.8e-12 73.9 58 56.9
CAN.G1213.3 Capsicum annuum HOM05D002764 ORTHO05D002960 7.8e-12 73.9 72 55.6
A07p09600 Brassica napus HOM05D002764 ORTHO05D002960 1.0e-11 73.6 58 56.9
BolC7t41980H Brassica oleracea HOM05D002764 ORTHO05D002960 1.0e-11 73.6 58 56.9
BraA07t28755Z Brassica rapa HOM05D002764 ORTHO05D002960 1.0e-11 73.6 58 56.9
HanXRQChr09g0257691 Helianthus annuus HOM05D002764 ORTHO05D002960 1.0e-11 73.6 57 70.2
PGR042G3469 Punica granatum HOM05D002764 ORTHO05D002960 1.0e-11 73.6 58 63.8
Sabra03G0114300 Salix brachista HOM05D002764 ORTHO05D002960 1.0e-11 73.6 58 65.5
THA.LOC104798576 Tarenaya hassleriana HOM05D002764 ORTHO05D002960 1.0e-11 73.6 58 58.6
Ah.03g132240 Amaranthus hybridus HOM05D002764 ORTHO05D002960 1.3e-11 73.2 57 66.7
ECA232G3093 Erigeron canadensis HOM05D000029 ORTHO05D000001 1.3e-11 73.2 57 70.2
THA.LOC104814331 Tarenaya hassleriana HOM05D002764 ORTHO05D002960 1.3e-11 73.2 58 58.6
Aa31LG6G12060 Aethionema arabicum HOM05D002764 ORTHO05D002960 2.3e-11 72.4 63 54.0
C07p14780 Brassica napus HOM05D002764 ORTHO05D002960 3.0e-11 72.0 58 55.2
CAN.G745.4 Capsicum annuum HOM05D002764 ORTHO05D002960 3.0e-11 72.0 57 64.9
Thhalv10008211m.g Eutrema salsugineum HOM05D002764 ORTHO05D002960 3.0e-11 72.0 58 55.2
Sc25g0004730 Simmondsia chinensis HOM05D002764 ORTHO05D002960 8.6e-11 70.5 51 70.6
HPP92_005201 Vanilla planifolia HOM05D002764 ORTHO05D002960 8.6e-11 70.5 57 68.4
Lsat_1_v5_gn_8_107580 Lactuca sativa HOM05D002764 ORTHO05D002960 1.1e-10 70.1 57 66.7
SHI16745 Sapria himalayana HOM05D002764 ORTHO05D002960 1.1e-10 70.1 75 50.7
SEGI_18231 Sequoiadendron giganteum HOM05D002764 ORTHO05D002960 1.5e-10 69.7 54 66.7
PSO063G4440 Papaver somniferum HOM05D002764 ORTHO05D002960 1.9e-10 69.3 57 61.4
PSO782G1036 Papaver somniferum HOM05D002764 ORTHO05D002960 1.9e-10 69.3 57 61.4
CARHR030300 Cardamine hirsuta HOM05D002764 ORTHO05D002960 2.5e-10 68.9 54 59.3
Mapoly0019s0138 Marchantia polymorpha HOM05D002764 ORTHO05D002960 2.5e-10 68.9 54 64.8
AL1G45080 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 3.3e-10 68.6 54 59.3
AT1G30825 Arabidopsis thaliana HOM05D002764 ORTHO05D002960 3.3e-10 68.6 54 59.3
Carub.0001s2914 Capsella rubella HOM05D002764 ORTHO05D002960 3.3e-10 68.6 54 59.3
Zm00001eb116800 Zea mays HOM05D002764 ORTHO05D002960 4.3e-10 68.2 57 59.6
SMO118G0168 Selaginella moellendorffii HOM05D002764 ORTHO05D002960 7.3e-10 67.4 54 63.0
Pp3c14_19930 Physcomitrium patens HOM05D002764 ORTHO05D002960 9.5e-10 67.0 53 67.9
Oeu021869.2 Olea europaea HOM05D002764 ORTHO05D002960 1.2e-09 66.6 58 55.2
SalBow4G2392 Salvia bowleyana HOM05D002764 ORTHO05D002960 1.2e-09 66.6 58 53.4
SalBow4G2049 Salvia bowleyana HOM05D002764 ORTHO05D002960 1.6e-09 66.2 58 53.4
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 6.2e-09 64.3 57 59.6
DCAR_004367 Daucus carota HOM05D002764 ORTHO05D002960 1.1e-08 63.5 57 59.6
AagrBONN_evm.TU.Sc2ySwM_362.1937 Anthoceros agrestis HOM05D002764 ORTHO05D002960 1.8e-08 62.8 54 59.3
Pp3c1_32330 Physcomitrium patens HOM05D002764 ORTHO05D002960 5.2e-08 61.2 50 64.0
SGA_v2.0_scaffold263G46025 Striga asiatica HOM05D002764 ORTHO05D002960 5.2e-08 61.2 56 58.9
AagrBONN_evm.TU.Sc2ySwM_344.4310 Anthoceros agrestis HOM05D002764 ORTHO05D002960 8.9e-08 60.5 54 57.4
unitig_26.g9498 Utricularia gibba HOM05D002764 ORTHO05D002960 2.2e-06 55.8 50 58.0
SEGI_02118 Sequoiadendron giganteum HOM05D002764 ORTHO05D002960 6.4e-06 54.3 54 57.4


User provided reference genes

Program Settings