Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0328821 Rosa chinensis HOM05D007678 ORTHO05D009658 1.3e-132 476.5 246 100.0
FvH4_7g04260 Fragaria vesca HOM05D007678 ORTHO05D009658 6.5e-113 411.0 235 91.1
FAN10G0661 Fragaria x ananassa HOM05D007678 ORTHO05D009658 7.2e-112 407.5 233 91.0
Prupe.2G048500 Prunus persica HOM05D007678 ORTHO05D009658 1.4e-99 366.7 235 81.7
FAN06G1516 Fragaria x ananassa HOM05D007678 ORTHO05D009658 1.2e-95 353.6 265 75.1
MD02G1272300 Malus domestica HOM05D007678 ORTHO05D009658 9.7e-93 344.0 240 77.1
Potri.001G033500 Populus trichocarpa HOM05D007678 ORTHO05D009658 4.8e-84 315.1 216 76.4
Atru.chr2.1713_Atru.chr2.1714 Acer truncatum HOM05D007678 ORTHO05D009658 1.4e-83 313.5 223 72.6
QL04p021923 Quercus lobata HOM05D007678 ORTHO05D009658 5.3e-83 311.6 226 73.9
Thecc.10G137600 Theobroma cacao HOM05D007678 ORTHO05D009658 2.5e-80 302.8 237 69.6
Actinidia01693 Actinidia chinensis HOM05D007678 ORTHO05D009658 4.2e-80 302.0 238 66.0
Lj1g0010481 Lotus japonicus HOM05D007678 ORTHO05D009658 9.4e-80 300.8 207 74.4
TWI38G1059 Tripterygium wilfordii HOM05D007678 ORTHO05D009658 6.1e-79 298.1 244 66.8
Dinv31528 Davidia involucrata HOM05D007678 ORTHO05D009658 1.8e-78 296.6 226 69.5
Nn7g37012 Nelumbo nucifera HOM05D007678 ORTHO05D009658 2.3e-78 296.2 233 66.1
Sed0019894 Sechium edule HOM05D000001 ORTHO05D000003 6.8e-78 294.7 230 69.6
Haze_02966 Corylus avellana HOM05D007678 ORTHO05D009658 1.5e-77 293.5 250 66.0
MELO3C034052.2 Cucumis melo HOM05D007678 ORTHO05D009658 1.5e-77 293.5 239 66.9
Duzib106G1843 Durio zibethinus HOM05D007678 ORTHO05D009658 9.8e-77 290.8 242 67.4
Medtr7g009670 Medicago truncatula HOM05D007678 ORTHO05D009658 1.7e-76 290.0 215 70.7
Psat3g196520 Pisum sativum HOM05D007678 ORTHO05D009658 3.7e-76 288.9 215 70.2
Glyma.09G240200 Glycine max HOM05D007678 ORTHO05D009658 8.3e-76 287.7 227 68.3
Lalb_Chr17g0337231 Lupinus albus HOM05D007678 ORTHO05D009658 8.3e-76 287.7 218 69.3
Ca_04109_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 1.8e-75 286.6 230 67.0
Ca_04118_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 1.8e-75 286.6 230 67.0
Gohir.D10G198600 Gossypium hirsutum HOM05D007678 ORTHO05D009658 5.4e-75 285.0 236 66.1
TAR623G0324 Trochodendron aralioides HOM05D007678 ORTHO05D009658 5.4e-75 285.0 247 64.4
Sabra01G0023800 Salix brachista HOM05D007678 ORTHO05D009658 3.5e-74 282.3 258 62.4
Gorai.011G222500 Gossypium raimondii HOM05D007678 ORTHO05D009658 1.3e-73 280.4 236 65.7
Manes.04G155050 Manihot esculenta HOM05D007678 ORTHO05D009658 5.0e-73 278.5 282 58.9
Eucgr.G03196 Eucalyptus grandis HOM05D007678 ORTHO05D009658 9.4e-72 274.2 231 64.1
ECA248G0545 Erigeron canadensis HOM05D007678 ORTHO05D009658 2.1e-71 273.1 213 66.7
Sopen10g031780 Solanum pennellii HOM05D007678 ORTHO05D009658 2.1e-71 273.1 211 68.2
PGSC0003DMG401028118 Solanum tuberosum HOM05D007678 ORTHO05D009658 2.1e-71 273.1 213 67.1
Solyc10g081280.2 Solanum lycopersicum HOM05D007678 ORTHO05D009658 2.7e-71 272.7 211 67.3
HanXRQChr12g0376111 Helianthus annuus HOM05D007678 ORTHO05D009658 4.7e-71 271.9 243 62.6
DCAR_001914 Daucus carota HOM05D007678 ORTHO05D009658 1.4e-70 270.4 237 62.4
QL04p022035 Quercus lobata HOM05D007678 ORTHO05D009658 2.8e-68 262.7 198 70.2
ATR0307G037 Amborella trichopoda HOM05D007678 ORTHO05D009658 4.9e-68 261.9 241 57.7
COL.COLO4_04659 Corchorus olitorius HOM05D007678 ORTHO05D009658 6.3e-68 261.5 237 63.3
Oeu044217.3 Olea europaea HOM05D007678 ORTHO05D009658 1.1e-67 260.8 253 56.5
PGR031G1114 Punica granatum HOM05D007678 ORTHO05D009658 1.4e-67 260.4 233 63.5
Peaxi162Scf00153g00057 Petunia axillaris HOM05D007678 ORTHO05D009658 2.4e-67 259.6 195 70.3
MBI13_g30074_MAGBIO Magnolia biondii HOM05D007678 ORTHO05D009658 4.1e-67 258.8 225 64.0
Gohir.A10G190900 Gossypium hirsutum HOM05D007678 ORTHO05D009658 9.2e-67 257.7 195 71.3
Lsat_1_v5_gn_7_114920 Lactuca sativa HOM05D007678 ORTHO05D009658 1.2e-66 257.3 241 60.6
arahy.Tifrunner.gnm1.ann1.EB95VJ Arachis hypogaea HOM05D007678 ORTHO05D009658 1.6e-66 256.9 226 64.6
Migut.J01589 Erythranthe guttata HOM05D007678 ORTHO05D009658 5.0e-65 251.9 228 59.2
Ah.12g064780 Amaranthus hybridus HOM05D007678 ORTHO05D009658 6.6e-65 251.5 227 60.4
SalBow6G2419 Salvia bowleyana HOM05D007678 ORTHO05D009658 6.6e-65 251.5 213 61.5
CAN.G128.118 Capsicum annuum HOM05D001269 ORTHO05D001083 1.0e-62 244.2 193 66.3
Sc10g0003150 Simmondsia chinensis HOM05D007678 ORTHO05D009658 1.0e-62 244.2 240 59.6
vmacro20847 Vaccinium macrocarpon HOM05D007678 ORTHO05D009658 1.0e-62 244.2 240 57.5
Nitab4.5_0008005g0010 Nicotiana tabacum HOM05D007678 ORTHO05D009658 1.5e-61 240.4 183 66.7
CsaV3_5G029470 Cucumis sativus L. HOM05D007678 ORTHO05D000003 3.4e-61 239.2 183 69.9
unitig_37.g12769 Utricularia gibba HOM05D007678 ORTHO05D009658 1.7e-60 236.9 205 61.0
HPP92_018248 Vanilla planifolia HOM05D007678 ORTHO05D009658 2.4e-59 233.0 231 52.8
Hund13420 Selenicereus undatus HOM05D007678 ORTHO05D009658 9.2e-59 231.1 234 58.1
EL10Ac2g02701 Beta vulgaris HOM05D007678 ORTHO05D009658 3.5e-58 229.2 213 59.6
CDE09G0612 Ceratophyllum demersum HOM05D007678 ORTHO05D009658 3.5e-58 229.2 184 65.8
Nitab4.5_0000062g0570 Nicotiana tabacum HOM05D007678 ORTHO05D009658 1.7e-57 226.9 192 63.0
Zm00001eb303400 Zea mays HOM05D007678 ORTHO05D009658 3.9e-57 225.7 204 57.8
CiPaw.14G011000 Carya illinoinensis HOM05D007678 ORTHO05D009658 6.6e-57 224.9 189 65.1
Glyma.18G256300 Glycine max HOM05D007678 ORTHO05D009658 2.0e-53 213.4 216 58.3
VMungo1383G0210 Vigna mungo HOM05D000430 ORTHO05D009658 3.4e-53 212.6 156 71.8
AUR62031676 Chenopodium quinoa HOM05D007678 ORTHO05D009658 2.2e-52 209.9 177 63.3
Rhsim01G0121700 Rhododendron simsii HOM05D007678 ORTHO05D009658 4.1e-51 205.7 150 68.7
Mapoly0003s0067 Marchantia polymorpha HOM05D007678 ORTHO05D009658 2.0e-45 186.8 209 43.1
SMO174G0167 Selaginella moellendorffii HOM05D007678 ORTHO05D009658 1.4e-43 180.6 183 48.1
CANSAT56G0191 Cannabis sativa HOM05D007678 ORTHO05D009658 1.6e-42 177.2 133 67.7
Pp3c18_7980 Physcomitrium patens HOM05D007678 ORTHO05D009658 2.1e-42 176.8 206 43.2
Cc06_g20600 Coffea canephora HOM05D007678 ORTHO05D009658 4.6e-42 175.6 137 65.0
arahy.Tifrunner.gnm1.ann1.L3S1G4 Arachis hypogaea HOM05D007678 ORTHO05D009658 1.0e-41 174.5 208 51.4
CBR_g30334 Chara braunii HOM05D007678 ORTHO05D009658 3.9e-41 172.6 213 40.8
TPR.G4277 Trifolium pratense HOM05D007678 ORTHO05D009658 6.8e-38 161.8 119 69.7
QL04p021970 Quercus lobata HOM05D007678 ORTHO05D009658 9.9e-37 157.9 108 75.0
Phvul.008G043200 Phaseolus vulgaris HOM05D007678 ORTHO05D009658 8.4e-36 154.8 148 59.5
Cpa.g.sc33.162 Carica papaya HOM05D007678 ORTHO05D009658 5.4e-35 152.1 101 76.2
TPR.G8973 Trifolium pratense HOM05D007678 ORTHO05D009658 4.3e-32 142.5 98 73.5
Lsat_1_v5_gn_5_155661 Lactuca sativa HOM05D007678 ORTHO05D009658 5.6e-32 142.1 191 46.6
arahy.Tifrunner.gnm1.ann1.1DGF2A Arachis hypogaea HOM05D007678 ORTHO05D009658 6.2e-31 138.7 94 72.3
Cc06_g20610 Coffea canephora HOM05D007678 ORTHO05D009658 8.7e-25 118.2 85 67.1
PRCOL_00006709 Prasinoderma coloniale HOM05D007678 ORTHO05D009658 2.4e-22 110.2 199 32.7
FAN03G1326 Fragaria x ananassa HOM05D001392 ORTHO05D006407 5.3e-22 109.0 62 91.9
MCO01G505 Micromonas commoda HOM05D007678 ORTHO05D009658 6.4e-20 102.1 226 27.9
arahy.Tifrunner.gnm1.ann1.6E2HM0 Arachis hypogaea HOM05D007678 ORTHO05D009658 8.4e-20 101.7 78 66.7
GSVIVG01012452001 Vitis vinifera HOM05D007678 ORTHO05D009658 1.9e-19 100.5 80 66.2
CSS0047660 Camellia sinensis var. sinensis HOM05D007678 ORTHO05D009658 4.3e-16 89.4 60 70.0
arahy.Tifrunner.gnm1.ann1.78M82M Arachis hypogaea HOM05D007678 ORTHO05D009658 2.4e-14 83.6 64 67.2
QL04p021975 Quercus lobata HOM05D007678 ORTHO05D009658 4.9e-12 75.9 59 67.8
QL02p047964 Quercus lobata HOM05D007678 ORTHO05D009658 1.4e-11 74.3 77 58.4
arahy.Tifrunner.gnm1.ann1.NH3ZAS Arachis hypogaea HOM05D007678 ORTHO05D009658 1.0e-09 68.2 55 65.5
Os07g0222900 Oryza sativa ssp. japonica HOM05D007678 ORTHO05D009658 1.3e-07 61.2 65 52.3
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 2.8e-07 60.1 49 59.2
arahy.Tifrunner.gnm1.ann1.MMNX5U Arachis hypogaea HOM05D000747 ORTHO05D009658 1.4e-06 57.8 52 61.5
MBI17_g22149_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D000084 4.0e-06 56.2 36 63.9


User provided reference genes

Program Settings