Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0328651 Rosa chinensis HOM05D004849 ORTHO05D005955 5.3e-71 270.8 125 100.0
RcHm_v2.0_Chr1g0343821 Rosa chinensis HOM05D004849 ORTHO05D005955 2.9e-61 238.4 118 94.1
RcHm_v2.0_Chr4g0417521 Rosa chinensis HOM05D004849 ORTHO05D005955 6.8e-34 147.5 84 81.0
MD13G1185500 Malus domestica HOM05D004849 ORTHO05D005955 7.5e-33 144.1 84 79.8
Potri.008G204000 Populus trichocarpa HOM05D004849 ORTHO05D005955 9.8e-33 143.7 92 73.9
Sabra08G0157700 Salix brachista HOM05D004849 ORTHO05D005955 9.8e-33 143.7 92 73.9
Potri.010G031900 Populus trichocarpa HOM05D004849 ORTHO05D005955 1.3e-32 143.3 85 78.8
Prupe.1G153200 Prunus persica HOM05D004849 ORTHO05D005955 1.3e-32 143.3 75 85.3
CiPaw.01G161400 Carya illinoinensis HOM05D004849 ORTHO05D005955 1.7e-32 142.9 104 69.2
Manes.15G024600 Manihot esculenta HOM05D004849 ORTHO05D005955 2.2e-32 142.5 107 67.3
MD16G1186500 Malus domestica HOM05D004849 ORTHO05D005955 2.8e-32 142.1 75 84.0
QL05p054428 Quercus lobata HOM05D004849 ORTHO05D005955 2.8e-32 142.1 75 85.3
GSVIVG01017905001 Vitis vinifera HOM05D004849 ORTHO05D005955 2.8e-32 142.1 75 85.3
Ah.04g154300 Amaranthus hybridus HOM05D004849 ORTHO05D005955 4.9e-32 141.4 106 67.9
DCAR_027166 Daucus carota HOM05D004849 ORTHO05D005955 4.9e-32 141.4 106 67.9
EL10As3g23293 Beta vulgaris HOM05D004849 ORTHO05D005955 6.3e-32 141.0 106 66.0
Peaxi162Scf00134g02031 Petunia axillaris HOM05D004849 ORTHO05D005955 6.3e-32 141.0 106 67.0
QL06p003788 Quercus lobata HOM05D004849 ORTHO05D005955 8.3e-32 140.6 75 84.0
Sc13g0004120 Simmondsia chinensis HOM05D004849 ORTHO05D005955 8.3e-32 140.6 104 68.3
Thecc.04G224600 Theobroma cacao HOM05D004849 ORTHO05D005955 8.3e-32 140.6 107 66.4
Cpa.g.sc147.13 Carica papaya HOM05D004849 ORTHO05D005955 1.1e-31 140.2 106 66.0
Ciclev10006509m.g Citrus clementina HOM05D004849 ORTHO05D005955 1.1e-31 140.2 104 67.3
Manes.03G182800 Manihot esculenta HOM05D004849 ORTHO05D005955 1.1e-31 140.2 85 76.5
CANSAT78G0899 Cannabis sativa HOM05D004849 ORTHO05D005955 1.4e-31 139.8 72 86.1
FAN26G1719 Fragaria x ananassa HOM05D004849 ORTHO05D005955 1.4e-31 139.8 72 84.7
Oeu059240.1 Olea europaea HOM05D004849 ORTHO05D005955 1.4e-31 139.8 107 65.4
PGR142G0613 Punica granatum HOM05D004849 ORTHO05D005955 1.4e-31 139.8 72 86.1
Hund12176 Selenicereus undatus HOM05D004849 ORTHO05D005955 1.4e-31 139.8 106 67.0
TAR633G1443 Trochodendron aralioides HOM05D004849 ORTHO05D005955 1.4e-31 139.8 72 86.1
Cfa015600 Carpinus fangiana HOM05D004849 ORTHO05D005955 1.8e-31 139.4 75 82.7
Haze_00945 Corylus avellana HOM05D004849 ORTHO05D005955 1.8e-31 139.4 75 82.7
ClCG05G005350 Citrullus lanatus HOM05D004849 ORTHO05D005955 2.4e-31 139.0 75 84.0
MELO3C006555.2 Cucumis melo HOM05D004849 ORTHO05D005955 2.4e-31 139.0 75 84.0
Dinv44492 Davidia involucrata HOM05D004849 ORTHO05D005955 2.4e-31 139.0 106 66.0
Gohir.A09G213680 Gossypium hirsutum HOM05D004849 ORTHO05D005955 2.4e-31 139.0 106 66.0
Gohir.D09G216000 Gossypium hirsutum HOM05D004849 ORTHO05D005955 2.4e-31 139.0 106 66.0
Gorai.006G236400 Gossypium raimondii HOM05D004849 ORTHO05D005955 2.4e-31 139.0 106 66.0
Sed0011286 Sechium edule HOM05D004849 ORTHO05D005955 2.4e-31 139.0 75 84.0
DCAR_024593 Daucus carota HOM05D000983 ORTHO05D005955 3.1e-31 138.7 106 65.1
Dinv38407 Davidia involucrata HOM05D004849 ORTHO05D005955 3.1e-31 138.7 106 66.0
CAN.G69.23 Capsicum annuum HOM05D004849 ORTHO05D005955 4.1e-31 138.3 84 76.2
Solyc01g079840.3 Solanum lycopersicum HOM05D004849 ORTHO05D005955 4.1e-31 138.3 84 76.2
Sopen01g031590 Solanum pennellii HOM05D004849 ORTHO05D005955 4.1e-31 138.3 84 76.2
PGSC0003DMG400008991 Solanum tuberosum HOM05D004849 ORTHO05D005955 4.1e-31 138.3 84 76.2
TWI73G0956 Tripterygium wilfordii HOM05D004849 ORTHO05D005955 4.1e-31 138.3 72 84.7
Atru.chr4.2537 Acer truncatum HOM05D004849 ORTHO05D005955 5.4e-31 137.9 86 77.9
CsaV3_3G013600 Cucumis sativus L. HOM05D004849 ORTHO05D005955 5.4e-31 137.9 75 82.7
Sed0000406 Sechium edule HOM05D004849 ORTHO05D005955 7.0e-31 137.5 75 82.7
Ca_21102_v3 Cicer arietinum L. HOM05D004849 ORTHO05D005955 9.2e-31 137.1 72 84.7
FAN07G1248 Fragaria x ananassa HOM05D004849 ORTHO05D005955 9.2e-31 137.1 72 84.7
FAN22G1365 Fragaria x ananassa HOM05D004849 ORTHO05D005955 9.2e-31 137.1 72 84.7
Hma1.2p1_0511F.1_g169010 Hydrangea macrophylla HOM05D004849 ORTHO05D005955 9.2e-31 137.1 106 66.0
Lj4g0022520 Lotus japonicus HOM05D004849 ORTHO05D005955 9.2e-31 137.1 106 65.1
Lalb_Chr18g0056171 Lupinus albus HOM05D004849 ORTHO05D005955 9.2e-31 137.1 106 65.1
Lalb_Chr20g0118511 Lupinus albus HOM05D004849 ORTHO05D005955 9.2e-31 137.1 106 65.1
CSS0004513 Camellia sinensis var. sinensis HOM05D004849 ORTHO05D005955 1.2e-30 136.7 106 66.0
PSO170G1707 Papaver somniferum HOM05D004849 ORTHO05D005955 1.2e-30 136.7 84 76.2
PSO302G0110 Papaver somniferum HOM05D004849 ORTHO05D005955 1.2e-30 136.7 84 76.2
Rhsim04G0203300 Rhododendron simsii HOM05D004849 ORTHO05D005955 1.2e-30 136.7 72 83.3
TAR362G1319 Trochodendron aralioides HOM05D004849 ORTHO05D005955 1.2e-30 136.7 72 84.7
Glyma.07G258000 Glycine max HOM05D004849 ORTHO05D005955 1.6e-30 136.3 106 65.1
Glyma.17G016000 Glycine max HOM05D004849 ORTHO05D005955 1.6e-30 136.3 106 64.2
HanXRQChr16g0508681 Helianthus annuus HOM05D004849 ORTHO05D005955 2.0e-30 136.0 72 81.9
vmacro19618 Vaccinium macrocarpon HOM05D004849 ORTHO05D005955 2.0e-30 136.0 72 83.3
ECA236G3497 Erigeron canadensis HOM05D004849 ORTHO05D005955 2.7e-30 135.6 72 83.3
Eucgr.H03572 Eucalyptus grandis HOM05D004849 ORTHO05D005955 2.7e-30 135.6 75 80.0
Aa31LG11G10460 Aethionema arabicum HOM05D004849 ORTHO05D005955 3.5e-30 135.2 102 65.7
TWI09G1150 Tripterygium wilfordii HOM05D004849 ORTHO05D005955 3.5e-30 135.2 72 83.3
Nn1g02186 Nelumbo nucifera HOM05D004849 ORTHO05D005955 4.5e-30 134.8 84 75.0
VMungo1215G1989 Vigna mungo HOM05D004849 ORTHO05D005955 4.5e-30 134.8 72 83.3
BcaB08g36596 Brassica carinata HOM05D004849 ORTHO05D005955 5.9e-30 134.4 75 78.7
BcaC04g18590 Brassica carinata HOM05D004849 ORTHO05D005955 5.9e-30 134.4 106 64.2
A10p20450 Brassica napus HOM05D004849 ORTHO05D005955 5.9e-30 134.4 106 64.2
BraA10t44115Z Brassica rapa HOM05D004849 ORTHO05D005955 5.9e-30 134.4 106 64.2
AUR62038065 Chenopodium quinoa HOM05D004849 ORTHO05D005955 5.9e-30 134.4 72 81.9
AUR62038191 Chenopodium quinoa HOM05D004849 ORTHO05D005955 5.9e-30 134.4 72 81.9
Lj6A574T38 Lonicera japonica HOM05D004849 ORTHO05D005955 5.9e-30 134.4 72 81.9
Lj6C576T2 Lonicera japonica HOM05D004849 ORTHO05D005955 5.9e-30 134.4 72 81.9
Phvul.003G091500 Phaseolus vulgaris HOM05D004849 ORTHO05D005955 5.9e-30 134.4 106 64.2
vmacro19827 Vaccinium macrocarpon HOM05D004849 ORTHO05D005955 5.9e-30 134.4 72 81.9
BolC9t58573H Brassica oleracea HOM05D004849 ORTHO05D005955 7.8e-30 134.0 106 64.2
Cc03_g03260 Coffea canephora HOM05D004849 ORTHO05D005955 7.8e-30 134.0 73 80.8
FvH4_1g25030 Fragaria vesca HOM05D004849 ORTHO05D005955 7.8e-30 134.0 72 83.3
FvH4_4g14790 Fragaria vesca HOM05D004849 ORTHO05D005955 7.8e-30 134.0 72 83.3
FAN12G0879 Fragaria x ananassa HOM05D004849 ORTHO05D005955 7.8e-30 134.0 72 83.3
arahy.Tifrunner.gnm1.ann1.75KEF6 Arachis hypogaea HOM05D004849 ORTHO05D005955 1.0e-29 133.7 75 78.7
arahy.Tifrunner.gnm1.ann1.U1U343 Arachis hypogaea HOM05D004849 ORTHO05D005955 1.0e-29 133.7 75 78.7
FAN19G3009 Fragaria x ananassa HOM05D004849 ORTHO05D005955 1.0e-29 133.7 73 80.8
Medtr4g131690 Medicago truncatula HOM05D004849 ORTHO05D005955 1.0e-29 133.7 106 64.2
HPP92_001335 Vanilla planifolia HOM05D004849 ORTHO05D005955 1.0e-29 133.7 75 78.7
BcaB01g04873 Brassica carinata HOM05D004849 ORTHO05D005955 1.3e-29 133.3 75 78.7
A03p09400 Brassica napus HOM05D004849 ORTHO05D005955 1.3e-29 133.3 75 78.7
C03p10980 Brassica napus HOM05D004849 ORTHO05D005955 1.3e-29 133.3 75 78.7
BolC3t13567H Brassica oleracea HOM05D004849 ORTHO05D005955 1.3e-29 133.3 75 78.7
BraA03t10258Z Brassica rapa HOM05D004849 ORTHO05D005955 1.3e-29 133.3 75 78.7
Duzib151G0519 Durio zibethinus HOM05D004849 ORTHO05D005955 1.3e-29 133.3 106 64.2
Thhalv10013467m.g Eutrema salsugineum HOM05D004849 ORTHO05D005955 1.3e-29 133.3 75 78.7
Duzib212G0178 Durio zibethinus HOM05D004849 ORTHO05D005955 2.3e-29 132.5 106 64.2
ATR0626G348 Amborella trichopoda HOM05D004849 ORTHO05D005955 2.9e-29 132.1 72 80.6
Carub.0006s1751 Capsella rubella HOM05D004849 ORTHO05D005955 2.9e-29 132.1 102 64.7
Migut.G00304 Erythranthe guttata HOM05D004849 ORTHO05D005955 2.9e-29 132.1 106 63.2
Psat4g008440 Pisum sativum HOM05D004849 ORTHO05D005955 2.9e-29 132.1 106 63.2
TPR.G37111 Trifolium pratense HOM05D004849 ORTHO05D005955 2.9e-29 132.1 106 63.2
C09p57080 Brassica napus HOM05D004849 ORTHO05D005955 5.0e-29 131.3 106 63.2
CARHR193770 Cardamine hirsuta HOM05D004849 ORTHO05D005955 6.6e-29 131.0 91 69.2
COL.COLO4_26630 Corchorus olitorius HOM05D004849 ORTHO05D005955 8.6e-29 130.6 104 60.6
Actinidia23503 Actinidia chinensis HOM05D004849 ORTHO05D005955 1.9e-28 129.4 92 67.4
MSTRG.4003 Avicennia marina HOM05D004849 ORTHO05D005955 2.5e-28 129.0 72 77.8
Sp6g25195 Schrenkiella parvula HOM05D004849 ORTHO05D005955 2.5e-28 129.0 75 76.0
SGA_v2.0_scaffold237G43812 Striga asiatica HOM05D004849 ORTHO05D005955 2.5e-28 129.0 73 78.1
Lsat_1_v5_gn_9_81160 Lactuca sativa HOM05D004849 ORTHO05D005955 4.3e-28 128.3 106 59.4
Zm00001eb332890 Zea mays HOM05D004849 ORTHO05D005955 7.3e-28 127.5 72 79.2
AL6G30630 Arabidopsis lyrata HOM05D004849 ORTHO05D005955 2.1e-27 125.9 102 61.8
AT5G19180 Arabidopsis thaliana HOM05D004849 ORTHO05D005955 2.1e-27 125.9 102 61.8
MSTRG.10007 Avicennia marina HOM05D004849 ORTHO05D005955 2.1e-27 125.9 72 76.4
Os01g0271500 Oryza sativa ssp. japonica HOM05D004849 ORTHO05D005955 2.1e-27 125.9 72 77.8
SalBow2G0641 Salvia bowleyana HOM05D004849 ORTHO05D005955 4.7e-27 124.8 106 59.4
SEGI_19294 Sequoiadendron giganteum HOM05D004849 ORTHO05D005955 1.4e-26 123.2 104 59.6
unitig_748.g8344 Utricularia gibba HOM05D004849 ORTHO05D005955 1.4e-26 123.2 72 75.0
Aqoxy2G03291 Aquilegia oxysepala HOM05D004849 ORTHO05D005955 1.5e-25 119.8 102 58.8
MCO07G571 Micromonas commoda HOM05D004849 ORTHO05D005955 7.0e-23 110.9 76 63.2
PRCOL_00002962 Prasinoderma coloniale HOM05D004849 ORTHO05D005955 7.0e-23 110.9 91 58.2
Mapoly0032s0081 Marchantia polymorpha HOM05D004849 ORTHO05D005955 1.2e-22 110.2 101 52.5
Cre12.g491500 Chlamydomonas reinhardtii HOM05D004849 ORTHO05D005955 1.6e-22 109.8 72 65.3
Pp3c21_10350 Physcomitrium patens HOM05D004849 ORTHO05D005955 4.6e-22 108.2 101 52.5
SMO141G0184 Selaginella moellendorffii HOM05D004849 ORTHO05D005955 4.6e-22 108.2 101 52.5
Pp3c19_5590 Physcomitrium patens HOM05D004849 ORTHO05D005955 1.7e-21 106.3 69 63.8
AagrBONN_evm.TU.Sc2ySwM_368.1673 Anthoceros agrestis HOM05D004849 ORTHO05D005955 8.6e-21 104.0 107 46.7
BcaB01g05137 Brassica carinata HOM05D004849 ORTHO05D005955 5.6e-20 101.3 60 75.0
SHI00393 Sapria himalayana HOM05D004849 ORTHO05D005955 5.6e-20 101.3 101 58.4
Eucgr.H03570 Eucalyptus grandis HOM05D004849 ORTHO05D005955 8.0e-19 97.4 52 84.6
CBR_g30851 Chara braunii HOM05D004849 ORTHO05D005955 1.3e-13 80.1 70 52.9
Zm00001eb343560 Zea mays HOM05D005945 ORTHO05D006749 6.8e-10 67.8 39 71.8
Haze_27108 Corylus avellana HOM05D004849 ORTHO05D005955 1.2e-09 67.0 78 38.5
CDE11G0641 Ceratophyllum demersum HOM05D004849 ORTHO05D005955 3.5e-06 55.5 75 41.3


User provided reference genes

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