Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 1.8e-27 125.2 61 100.0
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.9e-21 105.1 50 100.0
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 1.9e-21 105.1 50 100.0
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.9e-21 105.1 50 100.0
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 2.5e-21 104.8 61 83.6
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 3.2e-21 104.4 61 85.2
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 7.2e-21 103.2 61 86.9
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 3.6e-20 100.9 61 80.3
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 6.1e-20 100.1 50 92.0
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 7.9e-20 99.8 50 94.0
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 1.3e-19 99.0 50 90.0
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 5.1e-19 97.1 50 88.0
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 5.1e-19 97.1 50 90.0
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 6.7e-19 96.7 59 79.7
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 6.7e-19 96.7 50 86.0
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 1.1e-18 95.9 50 88.0
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 1.1e-18 95.9 58 79.3
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 1.1e-18 95.9 50 90.0
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 1.9e-18 95.1 50 82.0
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 1.9e-18 95.1 50 82.0
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 1.9e-18 95.1 50 82.0
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 1.9e-18 95.1 50 82.0
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 1.9e-18 95.1 50 82.0
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 2.5e-18 94.7 50 88.0
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 2.5e-18 94.7 50 82.0
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 2.5e-18 94.7 50 86.0
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 2.5e-18 94.7 57 75.4
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 3.3e-18 94.4 50 86.0
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 3.3e-18 94.4 50 82.0
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 3.3e-18 94.4 50 88.0
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 3.3e-18 94.4 50 88.0
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 4.3e-18 94.0 53 79.2
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 4.3e-18 94.0 53 81.1
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 4.3e-18 94.0 50 86.0
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 5.7e-18 93.6 50 86.0
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 5.7e-18 93.6 50 80.0
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 5.7e-18 93.6 50 80.0
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 9.7e-18 92.8 59 72.9
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 1.3e-17 92.4 50 84.0
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 1.3e-17 92.4 50 82.0
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 1.6e-17 92.0 50 80.0
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 1.6e-17 92.0 50 80.0
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 1.6e-17 92.0 50 80.0
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 1.6e-17 92.0 50 82.0
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 2.2e-17 91.7 50 80.0
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 2.8e-17 91.3 59 74.6
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 2.8e-17 91.3 59 74.6
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 2.8e-17 91.3 53 79.2
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 3.7e-17 90.9 50 84.0
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 3.7e-17 90.9 50 82.0
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 4.8e-17 90.5 50 86.0
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 4.8e-17 90.5 59 76.3
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 4.8e-17 90.5 50 82.0
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 4.8e-17 90.5 50 82.0
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 1.1e-16 89.4 50 80.0
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 1.4e-16 89.0 49 81.6
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 1.4e-16 89.0 50 80.0
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 1.8e-16 88.6 50 80.0
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 1.8e-16 88.6 50 78.0
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 1.8e-16 88.6 50 80.0
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 2.4e-16 88.2 41 97.6
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 2.4e-16 88.2 41 97.6
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 3.1e-16 87.8 47 78.7
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 4.1e-16 87.4 50 82.0
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 4.1e-16 87.4 56 67.9
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 5.3e-16 87.0 52 75.0
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 2.0e-15 85.1 49 77.6
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 2.0e-15 85.1 48 72.9
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 2.0e-15 85.1 52 75.0
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 2.6e-15 84.7 41 90.2
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 3.4e-15 84.3 47 76.6
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 4.5e-15 84.0 41 90.2
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 4.5e-15 84.0 56 64.3
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 5.9e-15 83.6 47 74.5
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 1.0e-14 82.8 41 90.2
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 3.8e-14 80.9 48 72.9
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 6.5e-14 80.1 43 86.0
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 8.5e-14 79.7 44 79.5
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 8.5e-14 79.7 41 85.4
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.1e-13 79.3 42 81.0
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 1.4e-13 79.0 41 82.9
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 1.4e-13 79.0 56 69.6
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 1.4e-13 79.0 56 69.6
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 4.2e-13 77.4 41 85.4
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 4.2e-13 77.4 42 78.6
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 7.2e-13 76.6 43 81.4
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 2.1e-12 75.1 39 84.6
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 8.8e-11 69.7 45 66.7
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 3.3e-10 67.8 34 94.1
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.7e-09 65.5 48 72.9
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 6.3e-09 63.5 34 82.4
Mapoly0009s0018 Marchantia polymorpha HOM05D007733 ORTHO05D009786 6.9e-08 60.1 43 60.5
CBR_g21252 Chara braunii HOM05D007733 ORTHO05D009786 1.3e-06 55.8 49 49.0


User provided reference genes

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