Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 6.0e-17 89.7 45 100.0
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.1e-10 68.9 40 82.5
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 1.1e-10 68.9 40 82.5
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.5e-10 67.8 34 94.1
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.5e-10 67.8 34 94.1
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 2.5e-10 67.8 34 94.1
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.5e-10 67.8 34 94.1
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 2.5e-10 67.8 34 94.1
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 3.2e-10 67.4 34 91.2
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 7.1e-10 66.2 34 91.2
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 1.6e-09 65.1 37 78.4
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 1.6e-09 65.1 34 85.3
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 2.1e-09 64.7 34 85.3
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 2.7e-09 64.3 34 85.3
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 2.7e-09 64.3 34 85.3
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 2.7e-09 64.3 34 85.3
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 2.7e-09 64.3 34 85.3
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 2.7e-09 64.3 34 91.2
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 3.5e-09 63.9 34 82.4
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 3.5e-09 63.9 34 85.3
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 4.6e-09 63.5 34 85.3
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 4.6e-09 63.5 42 69.0
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 4.6e-09 63.5 34 88.2
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 6.1e-09 63.2 34 82.4
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 6.1e-09 63.2 34 82.4
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 6.1e-09 63.2 34 85.3
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 1.0e-08 62.4 34 79.4
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 1.0e-08 62.4 34 79.4
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 1.0e-08 62.4 34 79.4
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 1.0e-08 62.4 34 79.4
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 1.3e-08 62.0 34 82.4
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 1.3e-08 62.0 34 82.4
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 1.3e-08 62.0 34 82.4
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 1.8e-08 61.6 34 82.4
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 1.8e-08 61.6 34 82.4
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 1.8e-08 61.6 34 85.3
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 1.8e-08 61.6 34 79.4
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 1.8e-08 61.6 33 87.9
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 1.8e-08 61.6 33 87.9
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 2.3e-08 61.2 34 82.4
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 2.3e-08 61.2 37 75.7
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 3.0e-08 60.8 34 82.4
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 3.0e-08 60.8 34 76.5
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 3.0e-08 60.8 34 79.4
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 3.0e-08 60.8 39 69.2
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 3.9e-08 60.5 42 64.3
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 3.9e-08 60.5 42 64.3
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 3.9e-08 60.5 42 64.3
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 3.9e-08 60.5 42 64.3
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 3.9e-08 60.5 42 64.3
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 3.9e-08 60.5 42 69.0
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 3.9e-08 60.5 42 64.3
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 5.1e-08 60.1 34 79.4
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 5.1e-08 60.1 34 79.4
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 5.1e-08 60.1 38 73.7
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 6.7e-08 59.7 34 73.5
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 6.7e-08 59.7 34 76.5
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 8.7e-08 59.3 38 68.4
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 8.7e-08 59.3 34 76.5
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 8.7e-08 59.3 36 72.2
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 8.7e-08 59.3 34 79.4
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 8.7e-08 59.3 34 76.5
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 1.1e-07 58.9 38 68.4
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 1.1e-07 58.9 34 76.5
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.1e-07 58.9 34 76.5
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 1.5e-07 58.5 34 76.5
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 1.9e-07 58.2 34 73.5
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 2.5e-07 57.8 30 76.7
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 2.5e-07 57.8 30 76.7
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 2.5e-07 57.8 34 73.5
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 2.5e-07 57.8 38 65.8
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 3.3e-07 57.4 30 76.7
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 3.3e-07 57.4 34 73.5
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 3.3e-07 57.4 34 73.5
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 3.3e-07 57.4 34 73.5
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 4.3e-07 57.0 34 73.5
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 4.3e-07 57.0 36 75.0
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 5.7e-07 56.6 38 65.8
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 5.7e-07 56.6 38 65.8
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 5.7e-07 56.6 38 65.8
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 7.4e-07 56.2 38 65.8
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 7.4e-07 56.2 34 73.5
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 7.4e-07 56.2 34 73.5
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 9.7e-07 55.8 34 73.5
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 1.3e-06 55.5 34 70.6
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 1.3e-06 55.5 34 70.6
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 1.3e-06 55.5 34 67.6
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 1.3e-06 55.5 34 67.6
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 3.7e-06 53.9 30 70.0


User provided reference genes

Program Settings