Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 5.9e-225 783.9 394 100.0
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 3.8e-216 754.6 391 94.6
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.2e-209 733.0 394 92.4
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 1.6e-209 732.6 394 92.4
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 6.5e-208 727.2 394 91.4
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.0e-205 718.4 421 86.5
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 6.1e-198 694.1 400 86.2
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 3.4e-196 688.3 400 85.5
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 1.4e-181 639.8 399 79.4
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 3.7e-179 631.7 437 73.7
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 4.9e-179 631.3 398 79.1
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.9e-178 629.4 395 78.5
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 5.4e-178 627.9 396 78.3
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 4.6e-177 624.8 396 77.8
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 6.0e-177 624.4 403 77.9
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 3.0e-176 622.1 405 75.3
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 5.0e-176 621.3 339 87.0
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.9e-175 619.4 397 76.3
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 8.1e-174 614.0 405 75.3
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 8.1e-174 614.0 405 75.3
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.4e-173 613.2 389 76.6
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 1.8e-173 612.8 405 75.8
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 2.3e-173 612.5 400 75.8
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 4.0e-173 611.7 395 77.0
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 4.0e-173 611.7 391 77.2
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 1.2e-172 610.1 390 75.9
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 2.0e-172 609.4 386 77.7
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 3.4e-172 608.6 392 78.1
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 7.5e-172 607.4 391 75.7
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 7.5e-172 607.4 397 75.1
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 1.3e-171 606.7 406 74.4
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 1.3e-171 606.7 395 75.9
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 2.2e-171 605.9 398 75.6
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 2.2e-171 605.9 411 72.3
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 4.9e-171 604.7 402 74.9
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 6.4e-171 604.4 398 76.9
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 1.1e-170 603.6 426 70.9
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 3.2e-170 602.1 344 82.6
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 7.1e-170 600.9 399 73.9
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 7.1e-170 600.9 395 75.7
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 9.2e-170 600.5 393 77.1
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 1.2e-169 600.1 417 72.9
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 1.2e-169 600.1 399 73.2
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.2e-169 600.1 404 74.0
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.1e-169 599.4 408 73.8
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 2.7e-169 599.0 403 73.9
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 3.5e-169 598.6 398 75.9
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.0e-168 597.0 396 74.7
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 5.1e-168 594.7 398 72.6
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 5.1e-168 594.7 403 73.9
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 6.6e-168 594.3 394 76.1
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 8.6e-168 594.0 390 77.4
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-167 593.6 393 77.1
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 1.9e-167 592.8 396 72.2
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 2.5e-167 592.4 400 75.2
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 2.5e-167 592.4 418 71.1
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 4.3e-167 591.7 396 71.5
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 5.6e-167 591.3 400 74.5
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 5.6e-167 591.3 340 82.9
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 5.6e-167 591.3 331 84.3
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 5.6e-167 591.3 398 74.1
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.2e-166 590.1 353 80.5
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.6e-166 589.7 401 73.6
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 2.8e-166 589.0 358 79.9
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 1.4e-165 586.6 393 74.0
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.8e-165 586.3 399 72.4
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 4.0e-165 585.1 397 73.3
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 6.8e-165 584.3 341 81.5
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 8.9e-165 583.9 352 79.0
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.5e-164 583.2 393 74.3
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 2.0e-164 582.8 407 70.5
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 4.4e-164 581.6 397 72.5
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 7.6e-164 580.9 349 77.1
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 7.6e-164 580.9 365 78.6
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.7e-163 579.7 345 79.7
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 1.1e-162 577.0 407 71.0
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 4.1e-162 575.1 401 70.1
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 5.4e-162 574.7 346 80.1
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 7.1e-162 574.3 395 73.9
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 8.6e-160 567.4 372 76.1
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 1.2e-158 563.5 331 80.4
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 6.2e-158 561.2 407 68.1
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 1.1e-157 560.5 348 77.6
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.1e-157 560.5 409 68.7
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 1.8e-157 559.7 358 73.7
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 2.4e-157 559.3 351 75.5
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 3.1e-157 558.9 405 68.6
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 5.2e-157 558.1 408 68.4
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 2.6e-156 555.8 344 77.0
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 4.4e-156 555.1 405 68.9
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 4.4e-156 555.1 406 68.0
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 4.4e-156 555.1 396 69.7
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 4.4e-156 555.1 283 93.6
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 9.9e-156 553.9 404 69.1
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 9.9e-156 553.9 342 77.2
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 1.7e-155 553.1 402 69.7
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 1.7e-155 553.1 408 68.1
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 2.2e-155 552.7 393 72.0
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 2.2e-155 552.7 393 72.0
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 4.9e-155 551.6 348 76.4
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-154 550.4 394 73.4
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 7.1e-154 547.7 393 71.5
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 9.3e-154 547.4 383 71.8
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.6e-153 546.6 356 75.6
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 4.6e-153 545.0 296 87.8
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 6.0e-153 544.7 334 77.8
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 1.3e-150 537.0 331 77.0
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 3.6e-150 535.4 336 74.1
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 6.2e-150 534.6 345 75.1
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 3.4e-148 528.9 389 67.1
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.1e-146 523.9 332 73.2
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 5.1e-144 515.0 342 73.4
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 4.3e-143 511.9 323 77.1
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 9.6e-143 510.8 409 63.6
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 1.1e-141 507.3 333 73.3
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 1.4e-141 506.9 297 79.5
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 2.6e-140 502.7 349 69.3
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 3.4e-140 502.3 307 77.2
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 3.4e-140 502.3 307 77.2
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 1.7e-139 500.0 347 67.4
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 7.9e-137 491.1 277 84.1
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 5.1e-136 488.4 342 71.3
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 1.6e-134 483.4 334 68.9
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 5.3e-133 478.4 429 61.1
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 6.0e-129 464.9 326 71.2
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.9e-127 459.9 332 64.8
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 2.4e-125 453.0 325 68.9
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 3.4e-116 422.5 334 63.5
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 4.5e-116 422.2 346 57.2
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.0e-112 409.5 328 66.5
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 8.8e-112 407.9 261 75.9
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 2.7e-105 386.3 295 62.7
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.0e-104 384.4 347 55.0
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 8.2e-102 374.8 325 61.5
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 5.0e-91 339.0 356 55.9
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 2.1e-89 333.6 182 86.3
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.3e-88 330.1 248 69.4
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 4.0e-88 329.3 187 81.8
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 1.6e-81 307.4 275 61.5
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 4.7e-81 305.8 339 50.7
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.8e-77 293.9 158 87.3
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 1.2e-63 248.1 143 77.6
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 2.4e-61 240.4 303 45.5
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-59 233.4 257 52.9
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-58 230.7 235 54.9
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 8.3e-54 215.3 321 44.2
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.6e-49 201.1 175 64.6
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-46 191.0 175 63.4
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-46 191.0 175 63.4
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 2.2e-46 190.7 116 78.4
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 3.8e-46 189.9 130 73.8
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 5.6e-42 176.0 122 75.4
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 9.6e-34 148.7 159 55.3
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 9.6e-34 148.7 159 55.3
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 6.0e-28 129.4 231 37.2
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 6.0e-20 102.8 169 37.3
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 3.7e-17 93.6 49 79.6
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 3.7e-17 93.6 49 79.6
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 2.6e-15 87.4 51 84.3
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 1.8e-08 64.7 43 74.4
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 2.4e-08 64.3 41 73.2
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 4.5e-07 60.1 47 61.7
Psat0s4321g0080 Pisum sativum HOM05D003122 ORTHO05D012218 1.3e-06 58.5 94 43.6
Actinidia29603 Actinidia chinensis HOM05D000367 ORTHO05D002159 2.9e-06 57.4 41 65.9
arahy.Tifrunner.gnm1.ann1.03U3FR Arachis hypogaea HOM05D036434 ORTHO05D085949 6.5e-06 56.2 54 55.6
arahy.Tifrunner.gnm1.ann1.E7EHDM Arachis hypogaea HOM05D036434 ORTHO05D085916 6.5e-06 56.2 54 55.6


User provided reference genes

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