Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 6.7e-116 420.6 203 100.0
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 8.5e-111 403.7 201 97.0
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.5e-107 392.9 200 94.5
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 7.5e-107 390.6 201 93.5
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 9.8e-107 390.2 200 93.5
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.7e-106 389.4 200 93.5
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 2.2e-106 389.0 201 92.0
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 2.7e-104 382.1 201 90.5
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 4.5e-104 381.3 203 90.6
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 7.7e-104 380.6 208 88.9
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 9.8e-99 363.6 201 83.6
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 3.7e-98 361.7 201 83.6
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 6.3e-98 360.9 201 84.6
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 6.3e-98 360.9 201 83.6
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 1.1e-97 360.1 201 84.6
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 5.4e-97 357.8 201 84.6
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 1.6e-96 356.3 201 82.6
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 2.7e-96 355.5 200 83.5
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.5e-96 355.1 201 82.6
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 4.5e-96 354.8 201 82.6
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 7.7e-96 354.0 201 82.6
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 2.9e-95 352.1 201 80.6
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 8.6e-95 350.5 201 81.1
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.1e-94 350.1 201 79.1
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.1e-94 350.1 201 79.1
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 1.9e-94 349.4 201 82.6
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 3.3e-94 348.6 201 81.1
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 3.3e-94 348.6 201 81.1
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 7.2e-94 347.4 201 80.6
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 1.6e-93 346.3 201 78.6
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 1.6e-93 346.3 201 80.1
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 1.6e-93 346.3 201 79.6
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 2.1e-93 345.9 201 78.6
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.1e-93 345.9 201 80.1
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 2.1e-93 345.9 201 81.6
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 3.6e-93 345.1 201 80.1
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 8.0e-93 344.0 201 80.1
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 1.0e-92 343.6 201 79.6
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 1.4e-92 343.2 201 82.1
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 1.8e-92 342.8 201 81.1
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 3.0e-92 342.0 198 78.3
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 4.0e-92 341.7 201 81.1
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 5.2e-92 341.3 201 80.6
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 8.9e-92 340.5 201 79.6
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.6e-91 339.0 200 78.0
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.6e-91 339.0 201 78.6
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 4.4e-91 338.2 201 78.6
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 5.7e-91 337.8 200 78.0
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 7.5e-91 337.4 199 77.9
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 7.5e-91 337.4 201 77.6
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 9.8e-91 337.0 201 78.1
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 9.8e-91 337.0 201 78.6
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 9.8e-91 337.0 198 80.3
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 9.8e-91 337.0 198 80.3
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.3e-90 336.7 201 78.6
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 1.7e-90 336.3 200 79.0
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 2.9e-90 335.5 201 77.1
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 2.9e-90 335.5 201 75.1
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 6.3e-90 334.3 201 78.1
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 8.3e-90 334.0 201 77.1
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 1.1e-89 333.6 200 77.5
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 1.4e-89 333.2 200 78.0
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 1.8e-89 332.8 201 76.6
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 1.8e-89 332.8 200 77.5
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 3.2e-89 332.0 201 76.6
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 4.1e-89 331.6 200 76.5
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 4.1e-89 331.6 201 76.1
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 7.0e-89 330.9 201 76.1
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 7.0e-89 330.9 198 75.8
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 9.2e-89 330.5 201 77.6
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 3.5e-88 328.6 201 77.1
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 5.9e-88 327.8 198 76.8
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 7.8e-88 327.4 198 76.8
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 1.3e-87 326.6 200 76.0
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.3e-87 326.6 200 75.0
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 2.3e-87 325.9 201 76.1
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 2.9e-87 325.5 201 75.1
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 3.9e-87 325.1 245 65.3
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 6.6e-87 324.3 198 76.3
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 4.3e-86 321.6 201 74.6
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 5.6e-86 321.2 198 76.3
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 5.6e-86 321.2 200 74.0
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 4.7e-85 318.2 201 74.1
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 6.1e-85 317.8 200 74.5
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 6.1e-85 317.8 200 73.5
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 8.0e-85 317.4 201 73.1
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 3.1e-84 315.5 206 72.8
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 4.0e-84 315.1 200 72.5
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 6.8e-84 314.3 201 72.6
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 6.8e-84 314.3 201 73.1
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 1.5e-83 313.2 199 72.9
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 2.6e-83 312.4 199 72.4
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 4.4e-83 311.6 200 71.5
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 7.5e-83 310.8 201 74.6
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 1.3e-82 310.1 200 72.0
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 8.3e-82 307.4 200 70.5
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 1.1e-81 307.0 199 71.4
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.4e-81 306.6 224 66.1
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 1.9e-81 306.2 199 71.4
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 2.4e-81 305.8 181 86.7
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 5.4e-81 304.7 201 69.7
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.7e-80 302.4 177 78.5
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 5.6e-78 294.7 206 68.4
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 5.6e-78 294.7 143 98.6
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 1.2e-77 293.5 177 75.7
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 1.2e-77 293.5 200 68.5
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 2.8e-77 292.4 201 69.7
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 8.1e-77 290.8 198 69.2
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 6.8e-76 287.7 201 70.6
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 1.5e-75 286.6 165 79.4
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 7.5e-75 284.3 201 71.6
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 7.1e-73 277.7 200 65.0
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 1.1e-68 263.8 179 72.1
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 4.4e-67 258.5 153 76.5
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.9e-62 243.0 152 71.7
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 9.6e-62 240.7 198 55.1
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 2.1e-61 239.6 196 57.7
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 5.1e-55 218.4 196 55.1
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 1.9e-54 216.5 150 68.7
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 8.1e-53 211.1 198 54.5
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 1.8e-52 209.9 195 50.8
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.3e-47 193.0 175 56.0
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.5e-43 180.3 107 81.3
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 9.6e-38 161.0 102 68.6
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 7.6e-27 124.8 75 73.3
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 6.5e-26 121.7 80 66.2
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.9e-25 120.2 75 70.7
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 3.4e-19 99.4 81 55.6
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 2.2e-18 96.7 52 80.8


User provided reference genes

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