Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 1.4e-23 112.1 54 100.0
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 2.3e-23 111.3 53 98.1
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 2.3e-23 111.3 53 98.1
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 2.6e-22 107.8 53 94.3
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 4.4e-22 107.1 53 94.3
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 9.8e-22 105.9 53 94.3
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 2.9e-18 94.4 54 83.3
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.9e-18 94.4 54 83.3
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 6.6e-18 93.2 54 81.5
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 1.4e-15 85.5 53 73.6
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 4.0e-15 84.0 54 77.8
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 5.2e-15 83.6 53 67.9
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 3.4e-14 80.9 47 74.5
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 3.4e-14 80.9 51 64.7
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 4.4e-14 80.5 56 67.9
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 5.7e-14 80.1 50 68.0
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 5.7e-14 80.1 47 72.3
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 1.3e-13 79.0 47 72.3
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.3e-13 79.0 47 72.3
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 1.7e-13 78.6 56 64.3
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 1.7e-13 78.6 46 73.9
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 2.2e-13 78.2 56 66.1
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 2.8e-13 77.8 56 64.3
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.8e-13 77.8 47 72.3
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 2.8e-13 77.8 51 64.7
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 6.3e-13 76.6 50 70.0
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 6.3e-13 76.6 50 66.0
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 8.3e-13 76.3 50 72.0
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 8.3e-13 76.3 50 66.0
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 8.3e-13 76.3 50 66.0
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 1.1e-12 75.9 50 66.0
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.1e-12 75.9 45 71.1
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.1e-12 75.9 45 71.1
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 1.1e-12 75.9 53 62.3
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.1e-12 75.9 50 70.0
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 1.4e-12 75.5 49 65.3
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.4e-12 75.5 56 62.5
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 2.4e-12 74.7 47 68.1
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 2.4e-12 74.7 50 68.0
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 3.2e-12 74.3 50 64.0
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 3.2e-12 74.3 50 66.0
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 3.2e-12 74.3 50 66.0
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 3.2e-12 74.3 54 61.1
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 4.1e-12 73.9 46 69.6
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 4.1e-12 73.9 50 60.0
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 4.1e-12 73.9 48 68.8
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 5.4e-12 73.6 50 64.0
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 7.0e-12 73.2 50 64.0
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 9.2e-12 72.8 56 58.9
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 9.2e-12 72.8 51 62.7
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 1.2e-11 72.4 46 67.4
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 1.2e-11 72.4 54 64.8
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 1.2e-11 72.4 53 56.6
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.0e-11 71.6 50 64.0
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 2.0e-11 71.6 56 60.7
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 2.7e-11 71.2 50 64.0
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 3.5e-11 70.9 54 63.0
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 3.5e-11 70.9 49 67.3
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 4.5e-11 70.5 51 62.7
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 4.5e-11 70.5 50 60.0
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 4.5e-11 70.5 50 62.0
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 4.5e-11 70.5 50 64.0
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 4.5e-11 70.5 51 60.8
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 4.5e-11 70.5 50 60.0
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 4.5e-11 70.5 46 65.2
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 4.5e-11 70.5 46 65.2
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 5.9e-11 70.1 49 61.2
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 5.9e-11 70.1 49 61.2
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 5.9e-11 70.1 52 61.5
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 5.9e-11 70.1 52 61.5
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 5.9e-11 70.1 50 60.0
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 7.8e-11 69.7 46 65.2
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 7.8e-11 69.7 56 60.7
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 1.0e-10 69.3 50 60.0
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 1.0e-10 69.3 50 62.0
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 1.0e-10 69.3 49 65.3
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 1.3e-10 68.9 50 62.0
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 1.3e-10 68.9 50 58.0
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 1.7e-10 68.6 48 64.6
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 1.7e-10 68.6 54 57.4
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 1.7e-10 68.6 53 56.6
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 2.3e-10 68.2 50 56.0
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.3e-10 68.2 46 65.2
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 2.3e-10 68.2 50 58.0
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 2.9e-10 67.8 49 59.2
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 2.9e-10 67.8 46 63.0
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 2.9e-10 67.8 56 57.1
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 2.9e-10 67.8 50 58.0
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 3.9e-10 67.4 46 65.2
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 3.9e-10 67.4 46 65.2
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 5.0e-10 67.0 46 63.0
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 8.6e-10 66.2 50 58.0
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 1.5e-09 65.5 46 63.0
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.5e-09 64.7 51 58.8
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 3.3e-09 64.3 46 58.7
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 4.3e-09 63.9 45 57.8
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 7.3e-09 63.2 49 59.2
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 9.5e-09 62.8 50 50.0
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 1.6e-08 62.0 46 60.9
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 2.1e-08 61.6 50 54.0
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 5.2e-07 57.0 50 54.0
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.0e-06 55.1 43 53.5
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 5.8e-06 53.5 40 55.0


User provided reference genes

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