Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0326881 Rosa chinensis HOM05D002403 ORTHO05D348155 8.7e-22 105.9 48 100.0
RcHm_v2.0_Chr2g0097941 Rosa chinensis HOM05D002403 ORTHO05D002724 3.7e-12 73.9 34 97.1
MD03G1234700 Malus domestica HOM05D002403 ORTHO05D002724 6.9e-11 69.7 34 97.1
MD12G1203100 Malus domestica HOM05D002403 ORTHO05D002724 6.9e-11 69.7 34 97.1
RcHm_v2.0_Chr7g0234131 Rosa chinensis HOM05D002403 ORTHO05D002724 6.9e-11 69.7 34 97.1
Prupe.6G308800 Prunus persica HOM05D002403 ORTHO05D002724 2.0e-10 68.2 34 91.2
RcHm_v2.0_Chr3g0457711 Rosa chinensis HOM05D002403 ORTHO05D002724 2.0e-10 68.2 34 94.1
Cfa006730 Carpinus fangiana HOM05D002403 ORTHO05D002724 3.4e-10 67.4 34 91.2
MD04G1190400 Malus domestica HOM05D002403 ORTHO05D002724 4.5e-10 67.0 34 91.2
FvH4_6g08040 Fragaria vesca HOM05D002403 ORTHO05D002724 5.8e-10 66.6 34 91.2
FAN14G3133 Fragaria x ananassa HOM05D002403 ORTHO05D002724 5.8e-10 66.6 34 91.2
FAN05G4162 Fragaria x ananassa HOM05D002403 ORTHO05D002724 7.6e-10 66.2 34 88.2
Haze_04030 Corylus avellana HOM05D002403 ORTHO05D002724 1.3e-09 65.5 34 88.2
Duzib093G2011 Durio zibethinus HOM05D002403 ORTHO05D002724 3.8e-09 63.9 34 88.2
Eucgr.H01294 Eucalyptus grandis HOM05D002403 ORTHO05D002724 3.8e-09 63.9 34 88.2
FAN02G2552 Fragaria x ananassa HOM05D002403 ORTHO05D002724 3.8e-09 63.9 34 85.3
MD04G1190800 Malus domestica HOM05D002403 ORTHO05D002724 3.8e-09 63.9 34 85.3
Manes.08G080200 Manihot esculenta HOM05D002403 ORTHO05D002724 3.8e-09 63.9 34 88.2
VMungo0720G0820 Vigna mungo HOM05D002403 ORTHO05D002724 3.8e-09 63.9 34 88.2
CANSAT54G0224 Cannabis sativa HOM05D002403 ORTHO05D002724 4.9e-09 63.5 34 85.3
Potri.003G155800 Populus trichocarpa HOM05D002403 ORTHO05D002724 4.9e-09 63.5 34 85.3
Potri.006G086000 Populus trichocarpa HOM05D002403 ORTHO05D002724 4.9e-09 63.5 34 85.3
PGR031G0862 Punica granatum HOM05D002403 ORTHO05D002724 4.9e-09 63.5 34 85.3
Rhsim01G0130300 Rhododendron simsii HOM05D002403 ORTHO05D002724 4.9e-09 63.5 34 82.4
Sabra06G0065600 Salix brachista HOM05D002403 ORTHO05D002724 4.9e-09 63.5 34 85.3
THA.LOC104827018 Tarenaya hassleriana HOM05D002403 ORTHO05D002724 6.5e-09 63.2 34 85.3
Aa31LG1G22480 Aethionema arabicum HOM05D002403 ORTHO05D002724 8.4e-09 62.8 34 82.4
arahy.Tifrunner.gnm1.ann1.B4GIY0 Arachis hypogaea HOM05D002403 ORTHO05D002724 8.4e-09 62.8 34 85.3
A03p00600 Brassica napus HOM05D002403 ORTHO05D002724 8.4e-09 62.8 34 82.4
CiPaw.08G153200 Carya illinoinensis HOM05D002403 ORTHO05D002724 8.4e-09 62.8 34 85.3
GSVIVG01031286001 Vitis vinifera HOM05D002403 ORTHO05D002724 8.4e-09 62.8 34 85.3
Atru.chr8.1982 Acer truncatum HOM05D002403 ORTHO05D002724 1.1e-08 62.4 34 79.4
CSS0018724 Camellia sinensis var. sinensis HOM05D002403 ORTHO05D002724 1.1e-08 62.4 34 82.4
CSS0029925 Camellia sinensis var. sinensis HOM05D002403 ORTHO05D002724 1.1e-08 62.4 34 82.4
Dinv24483 Davidia involucrata HOM05D002403 ORTHO05D002724 1.1e-08 62.4 34 82.4
Thhalv10014095m.g Eutrema salsugineum HOM05D002403 ORTHO05D002724 1.1e-08 62.4 34 82.4
Nn3g21835 Nelumbo nucifera HOM05D002403 ORTHO05D002724 1.1e-08 62.4 34 82.4
RhsimUnG0037800 Rhododendron simsii HOM05D002403 ORTHO05D002724 1.1e-08 62.4 34 85.3
TWI77G1018 Tripterygium wilfordii HOM05D002403 ORTHO05D002724 1.1e-08 62.4 34 79.4
Ciclev10012095m.g Citrus clementina HOM05D002403 ORTHO05D002724 1.4e-08 62.0 34 85.3
COL.COLO4_14790 Corchorus olitorius HOM05D002403 ORTHO05D002724 1.4e-08 62.0 34 85.3
ECA246G1410 Erigeron canadensis HOM05D002403 ORTHO05D002724 1.4e-08 62.0 34 76.5
Lju99C10T11 Lonicera japonica HOM05D002403 ORTHO05D002724 1.4e-08 62.0 34 79.4
Thecc.05G038800 Theobroma cacao HOM05D002403 ORTHO05D002724 1.4e-08 62.0 34 82.4
vmacro19773 Vaccinium macrocarpon HOM05D002403 ORTHO05D002724 1.4e-08 62.0 34 82.4
Phvul.007G203500 Phaseolus vulgaris HOM05D002403 ORTHO05D002724 1.9e-08 61.6 34 82.4
BcaB01g06220 Brassica carinata HOM05D002403 ORTHO05D002724 2.5e-08 61.2 34 79.4
A10p33350 Brassica napus HOM05D002403 ORTHO05D002724 2.5e-08 61.2 34 79.4
BraA10t45366Z Brassica rapa HOM05D002403 ORTHO05D002724 2.5e-08 61.2 34 79.4
Cpa.g.sc260.7 Carica papaya HOM05D002403 ORTHO05D002724 2.5e-08 61.2 34 85.3
Lsat_1_v5_gn_3_61220 Lactuca sativa HOM05D002403 ORTHO05D002724 2.5e-08 61.2 34 76.5
PSO724G0808 Papaver somniferum HOM05D002403 ORTHO05D002724 2.5e-08 61.2 34 79.4
PSO729G0056 Papaver somniferum HOM05D002403 ORTHO05D002724 2.5e-08 61.2 34 79.4
Hund21853 Selenicereus undatus HOM05D002403 ORTHO05D002724 2.5e-08 61.2 34 79.4
Aqoxy5G02737 Aquilegia oxysepala HOM05D002403 ORTHO05D002724 3.2e-08 60.8 34 79.4
arahy.Tifrunner.gnm1.ann1.THA6J1 Arachis hypogaea HOM05D002403 ORTHO05D002724 3.2e-08 60.8 34 82.4
Glyma.10G145200 Glycine max HOM05D002403 ORTHO05D002724 3.2e-08 60.8 34 82.4
Lalb_Chr06g0167391 Lupinus albus HOM05D002403 ORTHO05D002724 3.2e-08 60.8 34 82.4
AL6G11530 Arabidopsis lyrata HOM05D002403 ORTHO05D002724 4.2e-08 60.5 34 79.4
AT5G02270 Arabidopsis thaliana HOM05D002403 ORTHO05D002724 4.2e-08 60.5 34 79.4
Carub.0006s0111 Capsella rubella HOM05D002403 ORTHO05D002724 4.2e-08 60.5 34 79.4
CARHR211100 Cardamine hirsuta HOM05D002403 ORTHO05D002724 4.2e-08 60.5 34 79.4
CiPaw.07G032700 Carya illinoinensis HOM05D002403 ORTHO05D002724 4.2e-08 60.5 34 79.4
Psat6g153720 Pisum sativum HOM05D002403 ORTHO05D002724 4.2e-08 60.5 34 79.4
TAR362G0833 Trochodendron aralioides HOM05D002403 ORTHO05D002724 4.2e-08 60.5 34 79.4
Actinidia01670 Actinidia chinensis HOM05D002403 ORTHO05D002724 5.5e-08 60.1 34 82.4
QL03p017774 Quercus lobata HOM05D002403 ORTHO05D002724 5.5e-08 60.1 34 82.4
BraA03t09450Z Brassica rapa HOM05D002403 ORTHO05D002724 7.1e-08 59.7 34 76.5
Gohir.A11G327000 Gossypium hirsutum HOM05D002403 ORTHO05D002724 7.1e-08 59.7 34 79.4
Gohir.D11G345900 Gossypium hirsutum HOM05D002403 ORTHO05D002724 7.1e-08 59.7 34 79.4
Gorai.007G376200 Gossypium raimondii HOM05D002403 ORTHO05D002724 7.1e-08 59.7 34 79.4
TWI53G0157 Tripterygium wilfordii HOM05D002403 ORTHO05D002724 7.1e-08 59.7 34 76.5
EL10Ac4g09511 Beta vulgaris HOM05D002403 ORTHO05D002724 9.3e-08 59.3 34 76.5
Duzib106G1472 Durio zibethinus HOM05D002403 ORTHO05D002724 9.3e-08 59.3 34 79.4
HanXRQChr17g0550561 Helianthus annuus HOM05D002403 ORTHO05D002724 9.3e-08 59.3 34 73.5
Medtr1g084720 Medicago truncatula HOM05D002403 ORTHO05D002724 9.3e-08 59.3 34 79.4
Sp6g40180 Schrenkiella parvula HOM05D002403 ORTHO05D002724 9.3e-08 59.3 34 79.4
C09p74260 Brassica napus HOM05D002403 ORTHO05D002724 1.2e-07 58.9 34 76.5
Ca_10188_v3 Cicer arietinum L. HOM05D000897 ORTHO05D000716 1.2e-07 58.9 34 76.5
Ah.06g196250 Amaranthus hybridus HOM05D002403 ORTHO05D002724 1.6e-07 58.5 34 76.5
Glyma.20G094400 Glycine max HOM05D002403 ORTHO05D002724 1.6e-07 58.5 34 79.4
MBI19_g32694_MAGBIO Magnolia biondii HOM05D002403 ORTHO05D002724 1.6e-07 58.5 34 76.5
SalBow3G1703 Salvia bowleyana HOM05D002403 ORTHO05D002724 1.6e-07 58.5 34 79.4
AUR62000435 Chenopodium quinoa HOM05D002403 ORTHO05D002724 2.1e-07 58.2 34 76.5
AUR62006780 Chenopodium quinoa HOM05D002403 ORTHO05D002724 2.1e-07 58.2 34 76.5
Migut.N00957 Erythranthe guttata HOM05D002403 ORTHO05D002724 2.1e-07 58.2 34 76.5
Os03g0316900 Oryza sativa ssp. japonica HOM05D002403 ORTHO05D002724 2.7e-07 57.8 34 70.6
CDE02G1988 Ceratophyllum demersum HOM05D002403 ORTHO05D002724 3.5e-07 57.4 34 79.4
CDE08G1594 Ceratophyllum demersum HOM05D002403 ORTHO05D002724 4.6e-07 57.0 34 76.5
Oeu053744.1 Olea europaea HOM05D002403 ORTHO05D002724 4.6e-07 57.0 34 73.5
SGA_v2.0_scaffold4G01983 Striga asiatica HOM05D002403 ORTHO05D002724 4.6e-07 57.0 34 79.4
SGA_v2.0_scaffold87G26965 Striga asiatica HOM05D002403 ORTHO05D002724 4.6e-07 57.0 34 79.4
MSTRG.27921 Avicennia marina HOM05D002403 ORTHO05D002724 6.0e-07 56.6 34 73.5
Cc02_g35400 Coffea canephora HOM05D002403 ORTHO05D002724 6.0e-07 56.6 34 73.5
HPP92_012778 Vanilla planifolia HOM05D002403 ORTHO05D002724 6.0e-07 56.6 34 70.6
Lj5g0016202 Lotus japonicus HOM05D002403 ORTHO05D002724 7.9e-07 56.2 34 73.5
Mapoly0016s0142 Marchantia polymorpha HOM05D002403 ORTHO05D002724 7.9e-07 56.2 34 67.6
Migut.B00855 Erythranthe guttata HOM05D002403 ORTHO05D002724 1.0e-06 55.8 34 73.5
AagrBONN_evm.TU.Sc2ySwM_344.696 Anthoceros agrestis HOM05D002403 ORTHO05D002724 1.3e-06 55.5 34 73.5
ATR0693G037 Amborella trichopoda HOM05D002403 ORTHO05D002724 1.8e-06 55.1 34 70.6
CAN.G1076.47 Capsicum annuum HOM05D002403 ORTHO05D002724 1.8e-06 55.1 34 76.5
Solyc01g100850.3 Solanum lycopersicum HOM05D002403 ORTHO05D002724 1.8e-06 55.1 34 76.5
Sopen01g044350 Solanum pennellii HOM05D002403 ORTHO05D002724 1.8e-06 55.1 34 76.5
PGSC0003DMG400002789 Solanum tuberosum HOM05D002403 ORTHO05D002724 1.8e-06 55.1 34 76.5
Nitab4.5_0011298g0010 Nicotiana tabacum HOM05D002403 ORTHO05D002724 2.3e-06 54.7 34 73.5
Sed0015312 Sechium edule HOM05D002403 ORTHO05D002724 2.3e-06 54.7 34 70.6
unitig_32.g11535 Utricularia gibba HOM05D002403 ORTHO05D002724 3.0e-06 54.3 34 73.5
Peaxi162Scf00357g00622 Petunia axillaris HOM05D002403 ORTHO05D002724 5.1e-06 53.5 34 70.6
Sc06g0005690 Simmondsia chinensis HOM05D002403 ORTHO05D002724 5.1e-06 53.5 34 73.5
MELO3C025524.2 Cucumis melo HOM05D002403 ORTHO05D002724 6.7e-06 53.1 34 67.6
CsaV3_1G015760 Cucumis sativus L. HOM05D002403 ORTHO05D002724 6.7e-06 53.1 34 67.6


User provided reference genes

Program Settings