Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 1.9e-40 168.7 85 100.0
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.3e-23 112.8 97 61.9
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 1.6e-23 112.5 97 61.9
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 3.7e-23 111.3 97 60.8
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.7e-23 111.3 97 60.8
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 4.8e-23 110.9 95 61.1
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.1e-22 109.8 97 59.8
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.8e-22 109.0 97 59.8
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 5.3e-22 107.5 97 58.8
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 9.0e-22 106.7 97 57.7
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 1.5e-21 105.9 97 59.8
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 1.5e-21 105.9 97 58.8
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 1.5e-21 105.9 97 58.8
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.5e-21 105.9 97 58.8
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 2.0e-21 105.5 95 58.9
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 2.0e-21 105.5 97 58.8
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 2.6e-21 105.1 97 55.7
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 3.4e-21 104.8 97 56.7
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 3.4e-21 104.8 97 55.7
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 3.4e-21 104.8 97 55.7
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 3.4e-21 104.8 97 56.7
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 4.5e-21 104.4 97 56.7
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 4.5e-21 104.4 97 58.8
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.5e-21 104.4 95 57.9
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 5.8e-21 104.0 95 58.9
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 5.8e-21 104.0 97 58.8
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 5.8e-21 104.0 97 56.7
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 5.8e-21 104.0 97 57.7
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 7.6e-21 103.6 95 57.9
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 1.0e-20 103.2 97 57.7
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.0e-20 103.2 95 57.9
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 1.0e-20 103.2 95 58.9
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.3e-20 102.8 95 56.8
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.3e-20 102.8 95 56.8
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.7e-20 102.4 98 56.1
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 2.2e-20 102.1 97 56.7
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.2e-20 102.1 97 54.6
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 2.2e-20 102.1 97 55.7
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 2.9e-20 101.7 97 56.7
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 2.9e-20 101.7 97 56.7
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 2.9e-20 101.7 97 56.7
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 2.9e-20 101.7 97 57.7
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 2.9e-20 101.7 97 57.7
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 2.9e-20 101.7 97 57.7
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 2.9e-20 101.7 97 56.7
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.9e-20 101.7 97 57.7
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 2.9e-20 101.7 97 56.7
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 2.9e-20 101.7 97 56.7
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 3.8e-20 101.3 95 55.8
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 3.8e-20 101.3 95 56.8
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 3.8e-20 101.3 97 55.7
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.8e-20 101.3 97 57.7
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 6.5e-20 100.5 97 56.7
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 6.5e-20 100.5 97 54.6
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 6.5e-20 100.5 97 56.7
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 8.4e-20 100.1 97 54.6
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 8.4e-20 100.1 97 55.7
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 1.1e-19 99.8 97 56.7
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 1.1e-19 99.8 97 57.7
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.1e-19 99.8 97 56.7
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 1.4e-19 99.4 97 54.6
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.4e-19 99.4 95 55.8
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 1.4e-19 99.4 95 55.8
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 1.4e-19 99.4 97 54.6
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 1.9e-19 99.0 97 54.6
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 1.9e-19 99.0 97 55.7
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.9e-19 99.0 97 54.6
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 1.9e-19 99.0 97 54.6
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 1.9e-19 99.0 97 55.7
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 2.5e-19 98.6 97 53.6
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 2.5e-19 98.6 97 53.6
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 2.5e-19 98.6 98 57.1
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 2.5e-19 98.6 98 57.1
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 4.2e-19 97.8 97 54.6
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 4.2e-19 97.8 97 54.6
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.2e-19 97.8 97 53.6
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 4.2e-19 97.8 97 53.6
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 5.5e-19 97.4 97 53.6
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 5.5e-19 97.4 97 55.7
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 5.5e-19 97.4 94 55.3
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 5.5e-19 97.4 94 56.4
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 5.5e-19 97.4 94 55.3
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 7.1e-19 97.1 97 53.6
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 7.1e-19 97.1 97 53.6
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.2e-18 96.3 97 52.6
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 1.6e-18 95.9 97 52.6
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 1.6e-18 95.9 97 52.6
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 2.1e-18 95.5 97 53.6
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 2.1e-18 95.5 97 53.6
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 2.1e-18 95.5 97 53.6
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 2.1e-18 95.5 98 55.1
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 2.1e-18 95.5 97 53.6
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 2.7e-18 95.1 97 54.6
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 4.6e-18 94.4 97 51.5
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 6.0e-18 94.0 97 52.6
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 6.0e-18 94.0 97 53.6
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 6.0e-18 94.0 97 53.6
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 6.0e-18 94.0 97 53.6
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 6.0e-18 94.0 97 53.6
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 6.0e-18 94.0 97 53.6
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 6.0e-18 94.0 97 53.6
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 6.0e-18 94.0 97 53.6
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 6.0e-18 94.0 97 53.6
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 6.0e-18 94.0 97 53.6
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 6.0e-18 94.0 97 51.5
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 1.0e-17 93.2 97 52.6
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.0e-17 93.2 97 52.6
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 1.0e-17 93.2 97 52.6
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 1.3e-17 92.8 68 66.2
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 1.8e-17 92.4 97 53.6
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 1.8e-17 92.4 71 62.0
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 3.9e-17 91.3 97 52.6
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 3.9e-17 91.3 91 54.9
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 5.1e-17 90.9 68 63.2
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 6.7e-17 90.5 65 66.2
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 6.7e-17 90.5 73 56.2
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 6.7e-17 90.5 97 52.6
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 6.7e-17 90.5 126 45.2
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 8.7e-17 90.1 65 64.6
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 1.1e-16 89.7 92 52.2
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 2.5e-16 88.6 65 64.6
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 2.5e-16 88.6 73 58.9
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 3.3e-16 88.2 62 67.7
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 4.3e-16 87.8 98 52.0
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 5.7e-16 87.4 68 60.3
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 7.4e-16 87.0 97 50.5
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.3e-15 86.3 95 50.5
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 3.7e-15 84.7 97 51.5
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 4.8e-15 84.3 97 51.5
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 8.2e-15 83.6 94 48.9
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.8e-14 82.4 65 61.5
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.3e-14 80.9 91 50.5
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 2.0e-13 79.0 94 44.7
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.7e-12 75.9 114 43.0
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.9e-12 75.1 91 46.2
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 5.0e-12 74.3 75 54.7
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 5.0e-12 74.3 68 55.9
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 6.5e-12 73.9 80 43.8
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 6.1e-10 67.4 129 36.4
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 7.9e-10 67.0 37 83.8
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.4e-09 66.2 75 50.7
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 1.4e-09 66.2 79 46.8
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.5e-08 62.8 75 46.7
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 4.3e-08 61.2 37 75.7
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 2.2e-07 58.9 51 56.9
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 6.3e-07 57.4 71 39.4
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.1e-06 55.1 43 60.5
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 6.9e-06 53.9 48 54.2


User provided reference genes

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