Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0326611 Rosa chinensis HOM05D003137 ORTHO05D003433 3.2e-21 104.0 47 100.0
RcHm_v2.0_Chr2g0127371 Rosa chinensis HOM05D003137 ORTHO05D003433 2.0e-18 94.7 46 89.1
Prupe.2G153500 Prunus persica HOM05D003137 ORTHO05D003433 3.7e-17 90.5 46 84.8
Duzib133G1508 Durio zibethinus HOM05D003137 ORTHO05D003433 2.4e-16 87.8 46 80.4
Duzib138G0678 Durio zibethinus HOM05D003137 ORTHO05D003433 2.4e-16 87.8 46 80.4
SGA_v2.0_scaffold48G18065 Striga asiatica HOM05D003137 ORTHO05D003433 3.1e-16 87.4 45 80.0
Thecc.01G369700 Theobroma cacao HOM05D003137 ORTHO05D003433 3.1e-16 87.4 46 80.4
Lalb_Chr01g0021071 Lupinus albus HOM05D003137 ORTHO05D003433 4.1e-16 87.0 46 76.1
Glyma.09G263700 Glycine max HOM05D003137 ORTHO05D003433 5.3e-16 86.7 46 78.3
Lj1g0004776 Lotus japonicus HOM05D003137 ORTHO05D003433 5.3e-16 86.7 46 80.4
QL08p033861 Quercus lobata HOM05D003137 ORTHO05D003433 5.3e-16 86.7 45 80.0
Dinv39684 Davidia involucrata HOM05D003137 ORTHO05D003433 7.0e-16 86.3 45 82.2
GSVIVG01030627001 Vitis vinifera HOM05D003137 ORTHO05D003433 7.0e-16 86.3 45 80.0
Ciclev10015128m.g Citrus clementina HOM05D003137 ORTHO05D003433 9.1e-16 85.9 45 80.0
Psat3g112160 Pisum sativum HOM05D003137 ORTHO05D003433 9.1e-16 85.9 46 78.3
Potri.007G121400 Populus trichocarpa HOM05D003137 ORTHO05D003433 9.1e-16 85.9 45 80.0
Potri.017G039000 Populus trichocarpa HOM05D003137 ORTHO05D003433 9.1e-16 85.9 45 80.0
Gohir.A11G084600 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.2e-15 85.5 46 78.3
Gohir.A12G103350 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.2e-15 85.5 46 73.9
Gorai.007G094800 Gossypium raimondii HOM05D003137 ORTHO05D003433 1.2e-15 85.5 46 78.3
Gorai.008G116200 Gossypium raimondii HOM05D003137 ORTHO05D003433 1.2e-15 85.5 46 73.9
Nn4g22018 Nelumbo nucifera HOM05D003137 ORTHO05D003433 1.2e-15 85.5 46 76.1
Nn7g38434 Nelumbo nucifera HOM05D003137 ORTHO05D003433 1.2e-15 85.5 46 76.1
Oeu016738.1 Olea europaea HOM05D003137 ORTHO05D003433 1.2e-15 85.5 46 76.1
Sabra17G0026100 Salix brachista HOM05D003137 ORTHO05D003433 1.2e-15 85.5 45 77.8
Solyc04g080050.4 Solanum lycopersicum HOM05D003137 ORTHO05D003433 1.2e-15 85.5 45 80.0
Sopen04g033640 Solanum pennellii HOM05D003137 ORTHO05D003433 1.2e-15 85.5 45 80.0
PGSC0003DMG402027860 Solanum tuberosum HOM05D003137 ORTHO05D003433 1.2e-15 85.5 45 80.0
PGR042G2833 Punica granatum HOM05D003137 ORTHO05D003433 1.6e-15 85.1 44 84.1
CiPaw.04G118000 Carya illinoinensis HOM05D003137 ORTHO05D003433 2.0e-15 84.7 45 77.8
Dinv15027 Davidia involucrata HOM05D003137 ORTHO05D003433 2.0e-15 84.7 46 76.1
Nitab4.5_0003246g0110 Nicotiana tabacum HOM05D003137 ORTHO05D003433 2.0e-15 84.7 45 77.8
Aqoxy7G03817 Aquilegia oxysepala HOM05D003137 ORTHO05D003433 2.6e-15 84.3 46 76.1
arahy.Tifrunner.gnm1.ann1.VG7JT5 Arachis hypogaea HOM05D003137 ORTHO05D003433 2.6e-15 84.3 46 73.9
EL10Ac8g19786 Beta vulgaris HOM05D003137 ORTHO05D003433 2.6e-15 84.3 45 82.2
CAN.G1126.28 Capsicum annuum HOM05D003137 ORTHO05D003433 2.6e-15 84.3 45 75.6
Migut.C00698 Erythranthe guttata HOM05D003137 ORTHO05D003433 2.6e-15 84.3 46 78.3
Glyma.18G228400 Glycine max HOM05D003137 ORTHO05D003433 2.6e-15 84.3 46 76.1
MSTRG.25153 Avicennia marina HOM05D003137 ORTHO05D003433 3.5e-15 84.0 46 73.9
Cc10_g03200 Coffea canephora HOM05D003137 ORTHO05D003433 3.5e-15 84.0 45 80.0
COL.COLO4_12634 Corchorus olitorius HOM05D003137 ORTHO05D003433 3.5e-15 84.0 46 76.1
DCAR_020205 Daucus carota HOM05D003137 ORTHO05D003433 3.5e-15 84.0 46 78.3
Gohir.D11G088700 Gossypium hirsutum HOM05D003137 ORTHO05D003433 3.5e-15 84.0 46 76.1
Manes.13G073300 Manihot esculenta HOM05D003137 ORTHO05D003433 3.5e-15 84.0 45 77.8
CSS0047433 Camellia sinensis var. sinensis HOM05D003137 ORTHO05D003433 4.5e-15 83.6 45 77.8
AUR62027561 Chenopodium quinoa HOM05D003137 ORTHO05D003433 5.9e-15 83.2 44 81.8
AUR62035796 Chenopodium quinoa HOM05D003137 ORTHO05D003433 5.9e-15 83.2 44 81.8
Eucgr.K00863 Eucalyptus grandis HOM05D003137 ORTHO05D003433 5.9e-15 83.2 45 77.8
Prupe.3G220700 Prunus persica HOM05D003137 ORTHO05D003433 5.9e-15 83.2 44 77.3
Sc21g0001670 Simmondsia chinensis HOM05D003137 ORTHO05D003433 5.9e-15 83.2 45 77.8
Cfa014440 Carpinus fangiana HOM05D003137 ORTHO05D003433 7.7e-15 82.8 45 77.8
Lalb_Chr01g0005541 Lupinus albus HOM05D003137 ORTHO05D003433 7.7e-15 82.8 46 78.3
MD09G1104800 Malus domestica HOM05D003137 ORTHO05D003433 7.7e-15 82.8 43 79.1
MD17G1092500 Malus domestica HOM05D003137 ORTHO05D003433 7.7e-15 82.8 44 75.0
Actinidia11210 Actinidia chinensis HOM05D003137 ORTHO05D003433 1.0e-14 82.4 45 77.8
Cpa.g.sc8.238 Carica papaya HOM05D003137 ORTHO05D003433 1.0e-14 82.4 46 73.9
MELO3C019066.2 Cucumis melo HOM05D003137 ORTHO05D003433 1.0e-14 82.4 46 76.1
CsaV3_4G029720 Cucumis sativus L. HOM05D003137 ORTHO05D003433 1.0e-14 82.4 46 76.1
Phvul.008G069800 Phaseolus vulgaris HOM05D003137 ORTHO05D003433 1.0e-14 82.4 46 76.1
CSS0004570 Camellia sinensis var. sinensis HOM05D003137 ORTHO05D003433 1.3e-14 82.0 45 77.8
CiPaw.03G163200 Carya illinoinensis HOM05D003137 ORTHO05D003433 1.3e-14 82.0 45 75.6
Nn6g34282 Nelumbo nucifera HOM05D003137 ORTHO05D003433 1.3e-14 82.0 46 73.9
Os12g0595000 Oryza sativa ssp. japonica HOM05D003137 ORTHO05D003433 1.3e-14 82.0 46 73.9
SGA_v2.0_scaffold24G10245 Striga asiatica HOM05D003137 ORTHO05D003433 1.3e-14 82.0 49 75.5
TWI18G1074 Tripterygium wilfordii HOM05D003137 ORTHO05D003433 1.3e-14 82.0 45 77.8
TWI75G1854 Tripterygium wilfordii HOM05D003137 ORTHO05D003433 1.3e-14 82.0 45 77.8
FvH4_6g43560 Fragaria vesca HOM05D003137 ORTHO05D003433 1.7e-14 81.6 43 79.1
FAN05G0260 Fragaria x ananassa HOM05D003137 ORTHO05D003433 1.7e-14 81.6 43 79.1
FAN09G4236 Fragaria x ananassa HOM05D003137 ORTHO05D003433 1.7e-14 81.6 43 79.1
FAN14G4002 Fragaria x ananassa HOM05D003137 ORTHO05D003433 1.7e-14 81.6 43 79.1
Peaxi162Scf00057g00421 Petunia axillaris HOM05D003137 ORTHO05D003433 1.7e-14 81.6 45 73.3
RcHm_v2.0_Chr2g0160141 Rosa chinensis HOM05D003137 ORTHO05D003433 1.7e-14 81.6 43 79.1
CANSAT64G2088 Cannabis sativa HOM05D003137 ORTHO05D003433 2.2e-14 81.3 44 77.3
Haze_12901 Corylus avellana HOM05D003137 ORTHO05D003433 2.2e-14 81.3 45 75.6
ECA233G5037 Erigeron canadensis HOM05D003137 ORTHO05D003433 3.8e-14 80.5 44 75.0
Lsat_1_v5_gn_8_129381 Lactuca sativa HOM05D003137 ORTHO05D003433 3.8e-14 80.5 44 75.0
Lj3g0011099 Lotus japonicus HOM05D003137 ORTHO05D003433 3.8e-14 80.5 46 76.1
Sed0002741 Sechium edule HOM05D003137 ORTHO05D003433 3.8e-14 80.5 44 77.3
Sopen07g012160 Solanum pennellii HOM05D003137 ORTHO05D003433 3.8e-14 80.5 46 73.9
Actinidia32508 Actinidia chinensis HOM05D003137 ORTHO05D003433 5.0e-14 80.1 45 75.6
Glyma.13G306500 Glycine max HOM05D003137 ORTHO05D003433 5.0e-14 80.1 45 75.6
Solyc07g022830.3 Solanum lycopersicum HOM05D003137 ORTHO05D003433 5.0e-14 80.1 46 73.9
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 5.0e-14 80.1 48 70.8
Ciclev10020261m.g Citrus clementina HOM05D003137 ORTHO05D003433 6.5e-14 79.7 46 69.6
COL.COLO4_12992 Corchorus olitorius HOM05D003137 ORTHO05D003433 6.5e-14 79.7 46 73.9
Glyma.12G196001 Glycine max HOM05D003137 ORTHO05D003433 6.5e-14 79.7 46 73.9
Lalb_Chr24g0393061 Lupinus albus HOM05D003137 ORTHO05D003433 8.5e-14 79.3 46 73.9
Rhsim07G0131000 Rhododendron simsii HOM05D003137 ORTHO05D003433 8.5e-14 79.3 45 75.6
Medtr7g076560 Medicago truncatula HOM05D003137 ORTHO05D003433 1.1e-13 79.0 46 71.7
PSO782G4462 Papaver somniferum HOM05D003137 ORTHO05D003433 1.1e-13 79.0 46 71.7
Aa31LG5G17560 Aethionema arabicum HOM05D003137 ORTHO05D003433 1.5e-13 78.6 46 71.7
AL7G44570 Arabidopsis lyrata HOM05D003137 ORTHO05D003433 1.5e-13 78.6 46 71.7
AT5G35730 Arabidopsis thaliana HOM05D003137 ORTHO05D003433 1.5e-13 78.6 46 71.7
BcaB06g26976 Brassica carinata HOM05D003137 ORTHO05D003433 1.5e-13 78.6 46 71.7
BcaC02g09490 Brassica carinata HOM05D003137 ORTHO05D003433 1.5e-13 78.6 46 71.7
A04p09900 Brassica napus HOM05D003137 ORTHO05D003433 1.5e-13 78.6 46 71.7
C04p43380 Brassica napus HOM05D003137 ORTHO05D003433 1.5e-13 78.6 46 71.7
BolC4t25916H Brassica oleracea HOM05D003137 ORTHO05D003433 1.5e-13 78.6 46 71.7
BraA04t16653Z Brassica rapa HOM05D003137 ORTHO05D003433 1.5e-13 78.6 46 71.7
Carub.0007s3147 Capsella rubella HOM05D003137 ORTHO05D003433 1.5e-13 78.6 46 71.7
CARHR216920 Cardamine hirsuta HOM05D003137 ORTHO05D003433 1.5e-13 78.6 46 71.7
Thhalv10004243m.g Eutrema salsugineum HOM05D003137 ORTHO05D003433 1.5e-13 78.6 46 71.7
Sp7g06520 Schrenkiella parvula HOM05D003137 ORTHO05D003433 1.5e-13 78.6 46 71.7
arahy.Tifrunner.gnm1.ann1.HIPE1N Arachis hypogaea HOM05D003137 ORTHO05D003433 1.9e-13 78.2 46 71.7
arahy.Tifrunner.gnm1.ann1.U40R6G Arachis hypogaea HOM05D003137 ORTHO05D003433 1.9e-13 78.2 46 71.7
CDE09G0481 Ceratophyllum demersum HOM05D003137 ORTHO05D003433 1.9e-13 78.2 48 70.8
HanXRQChr17g0560951 Helianthus annuus HOM05D003137 ORTHO05D003433 1.9e-13 78.2 44 72.7
HPP92_010507 Vanilla planifolia HOM05D003137 ORTHO05D003433 1.9e-13 78.2 44 77.3
Zm00001eb135290 Zea mays HOM05D003137 ORTHO05D003433 1.9e-13 78.2 46 69.6
ATR0787G213 Amborella trichopoda HOM05D003137 ORTHO05D003433 2.5e-13 77.8 45 73.3
Medtr2g088870 Medicago truncatula HOM05D003137 ORTHO05D003433 3.2e-13 77.4 46 73.9
TPR.G4191 Trifolium pratense HOM05D003137 ORTHO05D003433 3.2e-13 77.4 46 71.7
Atru.chr6.3141 Acer truncatum HOM05D003137 ORTHO05D003433 4.2e-13 77.0 44 70.5
Duzib132G0891 Durio zibethinus HOM05D003137 ORTHO05D003433 4.2e-13 77.0 46 71.7
PSO478G0754 Papaver somniferum HOM05D003137 ORTHO05D003433 4.2e-13 77.0 46 69.6
THA.LOC104802010 Tarenaya hassleriana HOM05D003137 ORTHO05D003433 4.2e-13 77.0 46 69.6
THA.LOC104827598 Tarenaya hassleriana HOM05D003137 ORTHO05D003433 5.5e-13 76.6 46 67.4
Thecc.02G162600 Theobroma cacao HOM05D003137 ORTHO05D003433 5.5e-13 76.6 46 71.7
Gohir.A01G013400 Gossypium hirsutum HOM05D003137 ORTHO05D003433 9.4e-13 75.9 46 71.7
Gorai.002G016400 Gossypium raimondii HOM05D003137 ORTHO05D003433 9.4e-13 75.9 46 71.7
arahy.Tifrunner.gnm1.ann1.D87ERS Arachis hypogaea HOM05D003137 ORTHO05D003433 1.2e-12 75.5 46 69.6
Hma1.2p1_0613F.1_g189210 Hydrangea macrophylla HOM05D003137 ORTHO05D003433 1.2e-12 75.5 47 72.3
Phvul.005G113400 Phaseolus vulgaris HOM05D003137 ORTHO05D003433 1.6e-12 75.1 46 73.9
VMungo1080G0481 Vigna mungo HOM05D003137 ORTHO05D003433 1.6e-12 75.1 46 69.6
Gohir.D01G014700 Gossypium hirsutum HOM05D003137 ORTHO05D003433 2.7e-12 74.3 46 69.6
FAN02G1637 Fragaria x ananassa HOM05D003137 ORTHO05D003433 3.6e-12 73.9 56 62.5
ClCG04G004390 Citrullus lanatus HOM05D003137 ORTHO05D003433 1.4e-11 72.0 46 71.7
SEGI_18577 Sequoiadendron giganteum HOM05D003137 ORTHO05D003433 1.4e-11 72.0 46 67.4
Nitab4.5_0000110g0420 Nicotiana tabacum HOM05D003137 ORTHO05D003433 2.3e-11 71.2 45 71.1
BraA02t06351Z Brassica rapa HOM05D003137 ORTHO05D003433 1.5e-10 68.6 43 65.1
SalBow6G6965 Salvia bowleyana HOM05D003137 ORTHO05D003433 1.5e-10 68.6 38 78.9
Ah.14g086720 Amaranthus hybridus HOM05D003137 ORTHO05D003433 2.0e-10 68.2 38 81.6
SalBow7G2186 Salvia bowleyana HOM05D003137 ORTHO05D003433 2.0e-10 68.2 55 60.0
PGSC0003DMG400031494 Solanum tuberosum HOM05D003137 ORTHO05D003433 4.4e-10 67.0 37 78.4
Lj8C37T5 Lonicera japonica HOM05D003137 ORTHO05D003433 5.7e-10 66.6 38 76.3
vmacro14192 Vaccinium macrocarpon HOM05D003137 ORTHO05D003433 5.7e-10 66.6 37 78.4
Ah.09g232930 Amaranthus hybridus HOM05D001132 ORTHO05D003433 7.5e-10 66.2 37 81.1
SHI10274 Sapria himalayana HOM05D003137 ORTHO05D003433 7.5e-10 66.2 38 73.7
VMungo1383G1713 Vigna mungo HOM05D003137 ORTHO05D003433 7.5e-10 66.2 37 78.4
CAN.G655.3 Capsicum annuum HOM05D003137 ORTHO05D003433 9.8e-10 65.9 37 78.4
CDE02G0387 Ceratophyllum demersum HOM05D003137 ORTHO05D003433 9.8e-10 65.9 45 62.2
RcHm_v2.0_Chr1g0352051 Rosa chinensis HOM05D003137 ORTHO05D003433 9.8e-10 65.9 52 65.4
Sp4g14700 Schrenkiella parvula HOM05D003137 ORTHO05D003433 2.2e-09 64.7 40 65.0
THA.LOC104800980 Tarenaya hassleriana HOM05D003137 ORTHO05D003433 2.2e-09 64.7 40 70.0
MBI13_g32436_MAGBIO Magnolia biondii HOM05D003137 ORTHO05D003433 1.1e-08 62.4 38 71.1
Aa31LG5G4220 Aethionema arabicum HOM05D003137 ORTHO05D003433 1.4e-08 62.0 40 67.5
BcaB01g03986 Brassica carinata HOM05D003137 ORTHO05D003433 3.1e-08 60.8 40 62.5
BcaC01g05910 Brassica carinata HOM05D003137 ORTHO05D003433 3.1e-08 60.8 40 62.5
A03p18130 Brassica napus HOM05D003137 ORTHO05D003433 3.1e-08 60.8 40 62.5
C03p21160 Brassica napus HOM05D003137 ORTHO05D003433 3.1e-08 60.8 40 62.5
C04p61380 Brassica napus HOM05D003137 ORTHO05D003433 3.1e-08 60.8 40 62.5
BolC3t14499H Brassica oleracea HOM05D003137 ORTHO05D003433 3.1e-08 60.8 40 62.5
BolC4t27622H Brassica oleracea HOM05D003137 ORTHO05D003433 3.1e-08 60.8 40 62.5
BraA03t11072Z Brassica rapa HOM05D003137 ORTHO05D003433 3.1e-08 60.8 40 62.5
BraA03t13076Z Brassica rapa HOM05D003137 ORTHO05D003433 3.1e-08 60.8 40 62.5
CARHR126140 Cardamine hirsuta HOM05D003137 ORTHO05D003433 3.1e-08 60.8 40 62.5
BolC5t32375H Brassica oleracea HOM05D003137 ORTHO05D003433 4.1e-08 60.5 40 60.0
Carub.0004s1367 Capsella rubella HOM05D003137 ORTHO05D003433 4.1e-08 60.5 40 62.5
Thhalv10016614m.g Eutrema salsugineum HOM05D003137 ORTHO05D003433 4.1e-08 60.5 40 62.5
C09p54190 Brassica napus HOM05D003137 ORTHO05D003433 7.0e-08 59.7 40 60.0
arahy.Tifrunner.gnm1.ann1.2E7M4N Arachis hypogaea HOM05D003137 ORTHO05D003433 1.2e-07 58.9 34 67.6
Hund21479 Selenicereus undatus HOM05D003137 ORTHO05D003433 1.6e-07 58.5 33 75.8
AL4G27690 Arabidopsis lyrata HOM05D003137 ORTHO05D003433 2.0e-07 58.2 40 62.5
A01p22150 Brassica napus HOM05D001420 ORTHO05D003433 5.9e-07 56.6 37 62.2
C02p21320 Brassica napus HOM05D003137 ORTHO05D003433 5.9e-07 56.6 40 60.0
AT2G32295 Arabidopsis thaliana HOM05D003137 ORTHO05D003433 7.7e-07 56.2 40 60.0
A03p39250 Brassica napus HOM05D001420 ORTHO05D003433 1.0e-06 55.8 37 59.5
MBI11_g02542_MAGBIO Magnolia biondii HOM05D003137 ORTHO05D003433 2.2e-06 54.7 57 50.9
FAN08G1693 Fragaria x ananassa HOM05D003137 ORTHO05D003433 8.5e-06 52.8 30 76.7


User provided reference genes

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