Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0326261 Rosa chinensis HOM05D009091 ORTHO05D003768 9.3e-36 152.9 72 100.0
RcHm_v2.0_Chr5g0060161 Rosa chinensis HOM05D009091 ORTHO05D003768 7.9e-35 149.8 72 98.6
FvH4_3g45091 Fragaria vesca HOM05D009091 ORTHO05D003768 1.7e-29 132.1 72 84.7
RcHm_v2.0_Chr1g0315701 Rosa chinensis HOM05D009091 ORTHO05D003768 2.9e-29 131.3 72 84.7
RcHm_v2.0_Chr3g0496641 Rosa chinensis HOM05D009091 ORTHO05D003768 4.9e-29 130.6 70 87.1
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 3.2e-28 127.9 72 81.9
FvH4_6g35541 Fragaria vesca HOM05D009091 ORTHO05D003768 4.6e-27 124.0 69 82.6
FvH4_4g10040 Fragaria vesca HOM05D009091 ORTHO05D003768 5.8e-22 107.1 62 79.0
RcHm_v2.0_Chr2g0134701 Rosa chinensis HOM05D009091 ORTHO05D003768 1.6e-19 99.0 70 62.9
RcHm_v2.0_Chr6g0280321 Rosa chinensis HOM05D009091 ORTHO05D003768 6.1e-19 97.1 68 66.2
RcHm_v2.0_Chr1g0313071 Rosa chinensis HOM05D009091 ORTHO05D003768 7.9e-19 96.7 70 61.4
RcHm_v2.0_Chr1g0318841 Rosa chinensis HOM05D009091 ORTHO05D003768 2.3e-18 95.1 70 60.0
Atru.chr7.467 Acer truncatum HOM05D000107 ORTHO05D000062 5.9e-14 80.5 72 54.2
CSS0033678 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 4.2e-12 74.3 64 48.4
CSS0040185 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 1.2e-11 72.8 64 53.1
CSS0045228 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 2.7e-11 71.6 64 51.6
CSS0009587 Camellia sinensis var. sinensis HOM05D009091 ORTHO05D003768 3.6e-11 71.2 64 50.0
CSS0011469 Camellia sinensis var. sinensis HOM05D009091 ORTHO05D003768 3.6e-11 71.2 64 50.0
CSS0011924 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 2.3e-10 68.6 64 46.9
CSS0045721 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 2.3e-10 68.6 64 46.9
Atru.chr2.2530 Acer truncatum HOM05D001899 ORTHO05D001858 3.0e-10 68.2 66 48.5
MELO3C028271.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.5e-09 65.1 63 49.2
MELO3C027594.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.3e-09 64.7 63 47.6
MELO3C028846.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.3e-09 64.7 63 47.6
FvH4_4g06631 Fragaria vesca HOM05D008321 ORTHO05D003768 5.7e-09 63.9 66 50.0
FAN07G1302 Fragaria x ananassa HOM05D008321 ORTHO05D003768 5.7e-09 63.9 66 51.5
RcHm_v2.0_Chr0c28g0501051 Rosa chinensis HOM05D008321 ORTHO05D003768 9.7e-09 63.2 66 43.9
FAN19G2766 Fragaria x ananassa HOM05D008321 ORTHO05D003768 1.3e-08 62.8 65 49.2
CsaV3_3G006830 Cucumis sativus L. HOM05D007314 ORTHO05D003768 1.7e-08 62.4 63 47.6
FvH4_5g18843 Fragaria vesca HOM05D008321 ORTHO05D003768 1.7e-08 62.4 65 49.2
FvH4_6g20172 Fragaria vesca HOM05D008321 ORTHO05D003768 1.7e-08 62.4 66 48.5
ClCG07G007700 Citrullus lanatus HOM05D007314 ORTHO05D003768 2.2e-08 62.0 63 46.0
MELO3C001336.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.2e-08 62.0 68 41.2
ClCG05G014410 Citrullus lanatus HOM05D007314 ORTHO05D003768 2.8e-08 61.6 63 44.4
MELO3C028434.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.8e-08 61.6 63 47.6
FvH4_4g16173 Fragaria vesca HOM05D008321 ORTHO05D003768 2.8e-08 61.6 69 42.0
FvH4_2g07142 Fragaria vesca HOM05D008321 ORTHO05D003768 4.8e-08 60.8 67 43.3
FAN21G1044 Fragaria x ananassa HOM05D008321 ORTHO05D003768 4.8e-08 60.8 65 47.7
CsaV3_7G021120 Cucumis sativus L. HOM05D007314 ORTHO05D003768 6.3e-08 60.5 67 38.8
MELO3C031887.2 Cucumis melo HOM05D007314 ORTHO05D003768 8.2e-08 60.1 63 46.0
MELO3C029040.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.1e-07 59.7 62 46.8
RcHm_v2.0_Chr6g0269851 Rosa chinensis HOM05D008321 ORTHO05D003768 2.4e-07 58.5 66 42.4
MELO3C030144.2 Cucumis melo HOM05D007314 ORTHO05D003768 4.1e-07 57.8 68 41.2
FvH4_3g21852 Fragaria vesca HOM05D008321 ORTHO05D003768 6.9e-07 57.0 66 43.9
MELO3C029981.2 Cucumis melo HOM05D007314 ORTHO05D003768 9.1e-07 56.6 62 41.9
Atru.chr4.2623 Acer truncatum HOM05D008321 ORTHO05D003768 2.0e-06 55.5 66 42.4
MELO3C035542.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.6e-06 55.1 61 42.6
FvH4_6g17382 Fragaria vesca HOM05D008321 ORTHO05D003768 2.6e-06 55.1 67 40.3
Aqoxy5G02986 Aquilegia oxysepala HOM05D007314 ORTHO05D000285 5.9e-06 53.9 67 41.8
RcHm_v2.0_Chr4g0415851 Rosa chinensis HOM05D009091 ORTHO05D003768 5.9e-06 53.9 37 62.2
Aqoxy3G03529 Aquilegia oxysepala HOM05D007314 ORTHO05D003768 7.7e-06 53.5 67 41.8
FAN15G1405 Fragaria x ananassa HOM05D008321 ORTHO05D003768 7.7e-06 53.5 65 46.2


User provided reference genes

Program Settings