Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 1.1e-37 159.5 77 100.0
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 5.3e-29 130.6 78 87.2
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 9.0e-29 129.8 78 85.9
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 9.0e-29 129.8 78 85.9
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 9.0e-29 129.8 78 85.9
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 9.0e-29 129.8 78 85.9
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 9.0e-29 129.8 78 85.9
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 1.6e-25 119.0 69 84.1
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 3.5e-25 117.9 69 82.6
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 2.3e-24 115.2 69 79.7
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 3.3e-23 111.3 78 73.1
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 5.7e-23 110.5 76 72.4
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 2.1e-22 108.6 78 70.5
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 6.3e-22 107.1 78 70.5
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 1.4e-21 105.9 69 71.0
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 1.4e-21 105.9 78 67.9
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 1.8e-21 105.5 78 66.7
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 1.8e-21 105.5 69 71.0
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 2.4e-21 105.1 78 69.2
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 3.1e-21 104.8 71 70.4
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 4.1e-21 104.4 69 72.5
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 6.9e-21 103.6 78 65.4
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 6.9e-21 103.6 78 65.4
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 9.0e-21 103.2 70 70.0
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 9.0e-21 103.2 78 64.1
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 9.0e-21 103.2 71 73.2
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 1.2e-20 102.8 68 70.6
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 1.2e-20 102.8 71 69.0
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-20 102.8 71 69.0
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-20 102.8 71 69.0
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-20 102.8 71 69.0
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 1.2e-20 102.8 69 72.5
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 1.2e-20 102.8 78 67.9
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 1.2e-20 102.8 71 69.0
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 1.5e-20 102.4 71 69.0
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.5e-20 102.4 78 64.1
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 2.0e-20 102.1 71 69.0
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 2.6e-20 101.7 71 66.2
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 2.6e-20 101.7 71 66.2
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 2.6e-20 101.7 71 67.6
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 2.6e-20 101.7 78 66.7
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 2.6e-20 101.7 78 66.7
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 2.6e-20 101.7 78 62.8
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 3.4e-20 101.3 67 70.1
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 3.4e-20 101.3 71 66.2
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 3.4e-20 101.3 71 66.2
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 3.4e-20 101.3 72 66.7
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 4.5e-20 100.9 67 70.1
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 4.5e-20 100.9 67 70.1
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 4.5e-20 100.9 78 65.4
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 4.5e-20 100.9 78 66.7
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 4.5e-20 100.9 71 67.6
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 4.5e-20 100.9 69 69.6
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 5.9e-20 100.5 67 70.1
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 5.9e-20 100.5 65 70.8
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 5.9e-20 100.5 67 70.1
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 5.9e-20 100.5 66 69.7
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 7.6e-20 100.1 78 64.1
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 7.6e-20 100.1 62 71.0
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 7.6e-20 100.1 78 64.1
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.0e-19 99.8 72 68.1
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 1.3e-19 99.4 71 69.0
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.3e-19 99.4 72 68.1
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.3e-19 99.4 78 65.4
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 1.3e-19 99.4 78 66.7
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 1.7e-19 99.0 69 66.7
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 2.2e-19 98.6 76 63.2
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.2e-19 98.6 78 64.1
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 2.9e-19 98.2 78 65.4
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 2.9e-19 98.2 78 62.8
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 2.9e-19 98.2 69 68.1
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 2.9e-19 98.2 69 68.1
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 2.9e-19 98.2 72 66.7
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 2.9e-19 98.2 68 64.7
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 5.0e-19 97.4 69 62.3
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 5.0e-19 97.4 73 64.4
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 5.0e-19 97.4 78 62.8
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 5.0e-19 97.4 63 69.8
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 5.0e-19 97.4 69 66.7
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 6.5e-19 97.1 78 62.8
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 6.5e-19 97.1 78 62.8
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 8.5e-19 96.7 78 61.5
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 8.5e-19 96.7 69 65.2
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 8.5e-19 96.7 71 67.6
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 8.5e-19 96.7 69 65.2
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 8.5e-19 96.7 69 65.2
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 1.1e-18 96.3 69 63.8
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 1.4e-18 95.9 78 60.3
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 1.4e-18 95.9 78 60.3
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 1.4e-18 95.9 69 65.2
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 1.4e-18 95.9 69 66.7
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 1.9e-18 95.5 69 62.3
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.9e-18 95.5 75 60.0
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 2.5e-18 95.1 69 66.7
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 2.5e-18 95.1 69 66.7
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 2.5e-18 95.1 77 63.6
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 2.5e-18 95.1 69 63.8
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 4.2e-18 94.4 69 63.8
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 4.2e-18 94.4 70 64.3
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 4.2e-18 94.4 71 63.4
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 7.2e-18 93.6 71 63.4
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 9.3e-18 93.2 69 60.9
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 9.3e-18 93.2 69 63.8
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 1.2e-17 92.8 69 62.3
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 2.1e-17 92.0 69 60.9
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 2.7e-17 91.7 72 58.3
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 4.6e-17 90.9 69 63.8
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 6.1e-17 90.5 77 59.7
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 1.0e-16 89.7 63 63.5
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 1.0e-16 89.7 74 55.4
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 1.3e-16 89.4 69 59.4
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 1.8e-16 89.0 69 60.9
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 1.8e-16 89.0 69 60.9
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 2.3e-16 88.6 69 59.4
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 2.3e-16 88.6 69 59.4
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 3.9e-16 87.8 69 58.0
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 5.1e-16 87.4 69 60.9
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 6.7e-16 87.0 68 61.8
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 8.7e-16 86.7 69 59.4
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 2.2e-14 82.0 69 58.0
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 2.8e-14 81.6 69 55.1
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 2.8e-14 81.6 69 58.0
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 6.3e-14 80.5 66 53.0
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 1.4e-13 79.3 57 66.7
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 4.1e-13 77.8 69 52.2
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 6.9e-13 77.0 54 66.7
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 4.5e-12 74.3 65 52.3
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 7.7e-12 73.6 52 65.4
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.0e-11 73.2 64 56.2
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 1.0e-11 73.2 67 50.7
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 2.9e-11 71.6 67 46.3
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 3.8e-11 71.2 67 50.7
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 8.5e-11 70.1 50 64.0
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 3.6e-09 64.7 47 63.8
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 7.9e-09 63.5 41 68.3
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.6e-07 58.5 52 48.1
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 5.7e-07 57.4 61 36.1
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 9.7e-07 56.6 40 65.0
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 8.2e-06 53.5 59 37.3


User provided reference genes

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