Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0325881 Rosa chinensis HOM05D003361 ORTHO05D003760 5.4e-56 220.7 107 100.0
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 1.1e-27 126.7 66 92.4
RcHm_v2.0_Chr6g0252571 Rosa chinensis HOM05D003361 ORTHO05D003760 3.4e-26 121.7 61 95.1
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 1.9e-24 115.9 66 84.8
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.4e-24 115.5 66 84.8
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 4.2e-24 114.8 66 83.3
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 5.4e-24 114.4 66 83.3
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 5.4e-24 114.4 66 83.3
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 1.5e-18 96.3 66 69.7
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 8.4e-17 90.5 66 66.7
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 1.9e-16 89.4 64 64.1
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 1.9e-16 89.4 64 64.1
Haze_16605 Corylus avellana HOM05D003361 ORTHO05D003760 2.4e-16 89.0 66 65.2
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 2.4e-16 89.0 66 63.6
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 2.4e-16 89.0 66 66.7
ClCG09G003110 Citrullus lanatus HOM05D003361 ORTHO05D003760 4.2e-16 88.2 64 64.1
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 5.5e-16 87.8 66 65.2
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 1.2e-15 86.7 66 62.1
MD17G1216900 Malus domestica HOM05D003361 ORTHO05D003760 1.6e-15 86.3 58 72.4
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 2.1e-15 85.9 64 65.6
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 2.7e-15 85.5 66 65.2
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 2.7e-15 85.5 66 60.6
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 7.9e-15 84.0 64 62.5
Gohir.A10G072100 Gossypium hirsutum HOM05D003361 ORTHO05D003760 1.3e-14 83.2 66 60.6
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 1.8e-14 82.8 66 65.2
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 1.8e-14 82.8 66 65.2
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 2.3e-14 82.4 67 62.7
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 2.3e-14 82.4 66 59.1
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 3.0e-14 82.0 66 63.6
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 3.9e-14 81.6 66 59.1
Gohir.D10G079000 Gossypium hirsutum HOM05D003361 ORTHO05D003760 5.1e-14 81.3 66 59.1
Gorai.011G085800 Gossypium raimondii HOM05D003361 ORTHO05D003760 5.1e-14 81.3 66 59.1
Dinv30637 Davidia involucrata HOM05D003361 ORTHO05D003760 8.7e-14 80.5 66 60.6
Eucgr.J03087 Eucalyptus grandis HOM05D003361 ORTHO05D003760 8.7e-14 80.5 66 62.1
TAR383G0111 Trochodendron aralioides HOM05D003361 ORTHO05D003760 8.7e-14 80.5 66 59.1
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 1.9e-13 79.3 66 57.6
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 1.9e-13 79.3 66 57.6
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 2.5e-13 79.0 66 57.6
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 7.4e-13 77.4 66 56.1
SalBow7G3482 Salvia bowleyana HOM05D003361 ORTHO05D003760 7.4e-13 77.4 66 56.1
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 1.3e-12 76.6 66 56.1
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 1.3e-12 76.6 66 57.6
Psat7g257800 Pisum sativum HOM05D003361 ORTHO05D003760 2.1e-12 75.9 66 54.5
HanXRQChr17g0570311 Helianthus annuus HOM05D003361 ORTHO05D003760 2.8e-12 75.5 66 57.6
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 3.7e-12 75.1 66 59.1
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 3.7e-12 75.1 66 59.1
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 3.7e-12 75.1 66 59.1
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 4.8e-12 74.7 66 57.6
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 6.2e-12 74.3 76 48.7
Hma1.2p1_0461F.1_g157700 Hydrangea macrophylla HOM05D003361 ORTHO05D003760 6.2e-12 74.3 66 56.1
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 8.2e-12 73.9 64 59.4
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 1.1e-11 73.6 66 53.0
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 1.4e-11 73.2 66 57.6
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 1.4e-11 73.2 66 57.6
Medtr4g009873 Medicago truncatula HOM05D003361 ORTHO05D003760 1.4e-11 73.2 66 54.5
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 1.4e-11 73.2 66 56.1
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 1.8e-11 72.8 66 56.1
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 1.8e-11 72.8 66 57.6
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 1.8e-11 72.8 66 54.5
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.8e-11 72.8 64 57.8
COL.COLO4_33367 Corchorus olitorius HOM05D003361 ORTHO05D003760 3.1e-11 72.0 66 56.1
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 3.1e-11 72.0 66 56.1
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 4.0e-11 71.6 66 56.1
Sopen03g036300 Solanum pennellii HOM05D003361 ORTHO05D003760 4.0e-11 71.6 66 56.1
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 5.3e-11 71.2 66 51.5
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 5.3e-11 71.2 66 57.6
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 6.9e-11 70.9 66 51.5
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 9.0e-11 70.5 66 56.1
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 1.2e-10 70.1 66 54.5
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 1.2e-10 70.1 66 56.1
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 1.5e-10 69.7 76 51.3
Glyma.08G214500 Glycine max HOM05D003361 ORTHO05D003760 2.0e-10 69.3 66 51.5
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 2.0e-10 69.3 66 54.5
Dinv36449 Davidia involucrata HOM05D003361 ORTHO05D003760 2.6e-10 68.9 66 51.5
arahy.Tifrunner.gnm1.ann1.NFA80P Arachis hypogaea HOM05D003361 ORTHO05D003760 3.4e-10 68.6 66 51.5
CANSAT11G0288 Cannabis sativa HOM05D003361 ORTHO05D003760 3.4e-10 68.6 66 53.0
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 3.4e-10 68.6 66 54.5
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 3.4e-10 68.6 66 54.5
Actinidia15974 Actinidia chinensis HOM05D003361 ORTHO05D003760 4.5e-10 68.2 66 56.1
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 4.5e-10 68.2 66 54.5
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 4.5e-10 68.2 66 51.5
Lalb_Chr01g0012261 Lupinus albus HOM05D003361 ORTHO05D003760 4.5e-10 68.2 66 51.5
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 4.5e-10 68.2 66 54.5
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 5.8e-10 67.8 66 54.5
arahy.Tifrunner.gnm1.ann1.JM4LQW Arachis hypogaea HOM05D003361 ORTHO05D003760 7.6e-10 67.4 66 51.5
arahy.Tifrunner.gnm1.ann1.MWAB5B Arachis hypogaea HOM05D003361 ORTHO05D003760 7.6e-10 67.4 66 51.5
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 7.6e-10 67.4 66 50.0
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 7.6e-10 67.4 66 54.5
Gohir.D08G101300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 7.6e-10 67.4 66 54.5
Gorai.004G109300 Gossypium raimondii HOM05D003361 ORTHO05D003760 7.6e-10 67.4 66 54.5
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 1.0e-09 67.0 70 50.0
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 1.3e-09 66.6 66 54.5
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 1.3e-09 66.6 66 54.5
SHI02098 Sapria himalayana HOM05D003361 ORTHO05D003760 1.3e-09 66.6 66 56.1
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 1.7e-09 66.2 66 48.5
Dinv41445 Davidia involucrata HOM05D003361 ORTHO05D003760 1.7e-09 66.2 66 51.5
Manes.14G119228 Manihot esculenta HOM05D003361 ORTHO05D003760 2.2e-09 65.9 66 54.5
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 2.9e-09 65.5 66 51.5
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 3.8e-09 65.1 66 53.0
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 4.9e-09 64.7 66 53.0
Lj4g0018391 Lotus japonicus HOM05D003361 ORTHO05D003760 4.9e-09 64.7 66 51.5
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 4.9e-09 64.7 66 50.0
Thecc.09G137400 Theobroma cacao HOM05D003361 ORTHO05D003760 4.9e-09 64.7 66 53.0
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 6.5e-09 64.3 66 50.0
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 6.5e-09 64.3 66 50.0
ATR0767G175 Amborella trichopoda HOM05D003361 ORTHO05D003760 8.4e-09 63.9 66 50.0
Sed0010441 Sechium edule HOM05D003361 ORTHO05D003760 1.9e-08 62.8 65 50.8
Sabra06G0044400 Salix brachista HOM05D003361 ORTHO05D003760 4.2e-08 61.6 69 52.2
Medtr4g116170 Medicago truncatula HOM05D003361 ORTHO05D003760 1.6e-07 59.7 67 52.2
Hund21595 Selenicereus undatus HOM05D003361 ORTHO05D003760 1.6e-07 59.7 67 47.8
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 2.1e-07 59.3 67 50.7
VMungo0331G0010 Vigna mungo HOM05D003361 ORTHO05D003760 2.1e-07 59.3 59 44.1
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 2.7e-07 58.9 64 50.0
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 4.6e-07 58.2 67 52.2
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 6.0e-07 57.8 67 46.3
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 6.0e-07 57.8 64 50.0
ECA246G4877 Erigeron canadensis HOM05D003361 ORTHO05D003760 6.0e-07 57.8 71 50.7
unitig_699.g19089 Utricularia gibba HOM05D003361 ORTHO05D003760 6.0e-07 57.8 66 50.0
Hund00496 Selenicereus undatus HOM05D003361 ORTHO05D003760 7.9e-07 57.4 64 53.1
CAN.G1281.4 Capsicum annuum HOM05D003361 ORTHO05D003760 1.0e-06 57.0 66 47.0
Potri.006G061700 Populus trichocarpa HOM05D003361 ORTHO05D003760 1.0e-06 57.0 69 47.8
Glyma.13G163500 Glycine max HOM05D003361 ORTHO05D003760 1.3e-06 56.6 66 45.5
HPP92_017331 Vanilla planifolia HOM05D003361 ORTHO05D003760 1.8e-06 56.2 67 50.7
Peaxi162Scf00088g00618 Petunia axillaris HOM05D003361 ORTHO05D003760 2.3e-06 55.8 66 48.5
Solyc07g007420.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 2.3e-06 55.8 64 46.9
Sopen07g003470 Solanum pennellii HOM05D003361 ORTHO05D003760 2.3e-06 55.8 64 46.9
Ca_21637_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 3.9e-06 55.1 66 43.9
MD03G1231300 Malus domestica HOM05D000458 ORTHO05D004796 5.1e-06 54.7 53 60.4
FAN21G0672 Fragaria x ananassa HOM05D000458 ORTHO05D004796 8.7e-06 53.9 33 84.8
MD15G1162400 Malus domestica HOM05D003361 ORTHO05D003760 8.7e-06 53.9 65 46.2


User provided reference genes

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