Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 5.5e-206 720.7 357 100.0
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 1.2e-168 596.7 357 86.0
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 8.7e-151 537.3 357 77.9
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 9.0e-148 527.3 357 77.6
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 1.6e-141 506.5 349 74.2
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 5.8e-139 498.0 349 73.1
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.1e-137 493.8 360 73.3
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 3.2e-137 492.3 349 71.3
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 7.4e-134 481.1 349 68.5
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.1e-132 477.2 308 80.8
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 1.2e-131 473.8 356 66.9
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 2.2e-130 469.5 356 66.3
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 1.9e-129 466.5 349 67.3
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 2.5e-129 466.1 349 67.0
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 5.5e-129 464.9 356 65.7
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 1.2e-128 463.8 350 67.4
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 2.1e-128 463.0 350 66.6
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 4.6e-128 461.8 349 65.6
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 4.6e-128 461.8 349 65.6
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 1.0e-127 460.7 356 63.8
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 1.0e-127 460.7 356 64.6
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 1.3e-127 460.3 356 64.9
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 1.8e-127 459.9 349 65.9
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 2.3e-127 459.5 357 66.9
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 2.3e-127 459.5 356 64.6
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 1.1e-126 457.2 349 64.2
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 2.5e-126 456.1 357 65.8
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 2.5e-126 456.1 357 63.9
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 2.5e-126 456.1 350 65.7
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 3.3e-126 455.7 385 62.3
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 4.3e-126 455.3 358 64.8
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 5.7e-126 454.9 357 64.4
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.4e-126 454.5 349 65.0
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 9.7e-126 454.1 349 64.5
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 1.3e-125 453.8 351 64.4
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 4.8e-125 451.8 349 65.0
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 6.3e-125 451.4 350 64.9
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 6.3e-125 451.4 357 63.9
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.1e-124 450.7 349 64.8
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 1.8e-124 449.9 350 64.9
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 4.1e-124 448.7 350 64.9
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 5.3e-124 448.4 349 64.5
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 5.3e-124 448.4 357 63.9
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 1.5e-123 446.8 350 62.9
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 1.5e-123 446.8 354 62.7
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.0e-123 446.4 357 63.6
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 3.4e-123 445.7 360 63.9
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 4.5e-123 445.3 349 64.8
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 4.5e-123 445.3 357 64.1
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 7.7e-123 444.5 350 62.9
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.3e-122 443.7 350 63.4
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 2.2e-122 443.0 350 62.6
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 3.8e-122 442.2 347 65.4
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 3.8e-122 442.2 357 62.7
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 3.2e-121 439.1 358 63.4
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.2e-120 437.2 350 63.4
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 1.6e-120 436.8 357 61.9
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 1.6e-120 436.8 350 63.4
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 1.4e-119 433.7 349 63.3
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 5.1e-119 431.8 352 61.9
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 6.7e-119 431.4 350 62.9
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 7.4e-118 427.9 351 63.0
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 9.7e-118 427.6 352 60.8
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 3.7e-117 425.6 350 63.4
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 3.7e-117 425.6 354 60.2
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 1.1e-116 424.1 351 60.4
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 1.1e-116 424.1 350 60.3
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 1.4e-116 423.7 350 60.6
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 2.4e-116 422.9 350 60.6
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 6.9e-116 421.4 354 59.9
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 9.1e-116 421.0 354 60.2
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 9.1e-116 421.0 355 60.6
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 9.1e-116 421.0 350 60.3
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.2e-115 420.6 357 59.1
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 2.0e-115 419.9 350 61.1
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 2.0e-115 419.9 354 59.3
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 2.0e-115 419.9 354 59.3
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 1.0e-114 417.5 350 59.1
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 1.3e-114 417.2 350 62.0
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 1.7e-114 416.8 321 66.7
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 2.2e-114 416.4 354 59.0
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 1.1e-113 414.1 350 59.1
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 1.6e-112 410.2 355 58.6
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 2.1e-112 409.8 330 63.6
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 2.7e-112 409.5 350 60.0
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 2.7e-112 409.5 396 53.8
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 6.7e-111 404.8 350 58.6
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 3.3e-110 402.5 357 56.0
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 3.3e-110 402.5 357 56.0
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 5.7e-110 401.7 358 58.7
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 1.7e-109 400.2 374 55.9
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 1.1e-108 397.5 348 58.6
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 2.6e-107 392.9 343 59.5
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 4.5e-107 392.1 351 59.8
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 1.3e-106 390.6 350 56.6
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 2.2e-106 389.8 385 53.5
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 5.0e-106 388.7 350 55.1
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.4e-100 370.5 286 64.7
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 5.0e-98 362.1 290 61.0
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 4.2e-97 359.0 350 54.0
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 1.5e-94 350.5 351 55.3
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 7.5e-94 348.2 289 59.9
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 9.8e-94 347.8 289 61.9
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 2.9e-90 336.3 349 51.6
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.8e-87 327.0 287 56.8
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 1.4e-84 317.4 255 62.0
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 9.5e-81 304.7 345 47.8
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 1.0e-79 301.2 351 47.3
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 1.8e-76 290.4 343 45.8
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 5.4e-76 288.9 257 56.8
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.9e-73 280.4 344 45.6
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 4.4e-62 242.7 147 75.5
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 6.0e-59 232.3 145 74.5
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 1.0e-58 231.5 337 37.7
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 4.3e-49 199.5 155 63.2
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 4.3e-49 199.5 364 36.5
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 6.2e-48 195.7 235 44.7
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 1.4e-44 184.5 336 33.9
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 4.3e-41 172.9 273 40.3
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 1.8e-39 167.5 153 57.5
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 2.9e-37 160.2 230 44.8
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 3.8e-29 133.3 94 70.2
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 3.8e-29 133.3 99 61.6
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 1.4e-28 131.3 95 69.5
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 5.5e-28 129.4 66 92.4
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.0e-18 98.6 74 67.6
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 3.9e-18 96.7 74 63.5
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 8.7e-18 95.5 66 69.7
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 2.7e-11 73.9 116 37.1
DCAR_021657 Daucus carota HOM05D000572 ORTHO05D002399 7.7e-06 55.8 76 47.4


User provided reference genes

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