Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 1.1e-66 256.5 129 100.0
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 2.0e-36 156.0 76 94.7
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 1.7e-35 152.9 75 96.0
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.7e-35 152.9 75 96.0
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 3.7e-35 151.8 75 96.0
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 1.4e-34 149.8 75 94.7
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 1.4e-34 149.8 75 92.0
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 1.8e-34 149.4 75 89.3
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 2.4e-34 149.1 74 93.2
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 3.1e-34 148.7 93 77.4
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 3.1e-34 148.7 75 90.7
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 3.1e-34 148.7 75 92.0
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 4.1e-34 148.3 75 89.3
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 5.4e-34 147.9 98 70.4
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 5.4e-34 147.9 98 70.4
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 5.4e-34 147.9 75 88.0
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 7.0e-34 147.5 75 93.3
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 7.0e-34 147.5 81 85.2
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 2.0e-33 146.0 74 90.5
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 2.0e-33 146.0 75 88.0
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 2.0e-33 146.0 106 68.9
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 2.7e-33 145.6 98 73.5
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 3.5e-33 145.2 75 86.7
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 3.5e-33 145.2 75 88.0
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 5.9e-33 144.4 75 88.0
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 7.7e-33 144.1 95 73.7
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 7.7e-33 144.1 75 85.3
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 7.7e-33 144.1 102 67.6
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 7.7e-33 144.1 74 87.8
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 1.0e-32 143.7 83 77.1
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 1.0e-32 143.7 75 86.7
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 1.0e-32 143.7 75 88.0
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 1.3e-32 143.3 74 86.5
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 1.3e-32 143.3 86 76.7
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 1.3e-32 143.3 74 86.5
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 1.3e-32 143.3 83 77.1
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.7e-32 142.9 75 85.3
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.7e-32 142.9 75 85.3
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 1.7e-32 142.9 74 89.2
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 1.7e-32 142.9 74 89.2
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 2.9e-32 142.1 81 82.7
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 2.9e-32 142.1 81 82.7
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 2.9e-32 142.1 79 82.3
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 3.8e-32 141.7 75 82.7
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 5.0e-32 141.4 75 84.0
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 5.0e-32 141.4 75 88.0
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 5.0e-32 141.4 106 69.8
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 5.0e-32 141.4 75 85.3
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 5.0e-32 141.4 75 86.7
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 6.5e-32 141.0 79 81.0
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 6.5e-32 141.0 73 87.7
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 6.5e-32 141.0 73 87.7
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 6.5e-32 141.0 73 87.7
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 6.5e-32 141.0 75 85.3
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 6.5e-32 141.0 75 85.3
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 6.5e-32 141.0 75 85.3
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 6.5e-32 141.0 75 85.3
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 6.5e-32 141.0 75 85.3
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 6.5e-32 141.0 75 85.3
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 6.5e-32 141.0 75 85.3
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 8.6e-32 140.6 75 82.7
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 1.1e-31 140.2 81 81.5
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 1.1e-31 140.2 75 86.7
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 1.1e-31 140.2 75 86.7
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 1.9e-31 139.4 73 84.9
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 2.5e-31 139.0 75 85.3
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 2.5e-31 139.0 75 81.3
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 2.5e-31 139.0 113 62.8
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 2.5e-31 139.0 99 67.7
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 3.2e-31 138.7 92 69.6
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 3.2e-31 138.7 75 82.7
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 3.2e-31 138.7 74 85.1
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 5.5e-31 137.9 103 67.0
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 5.5e-31 137.9 73 87.7
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 7.2e-31 137.5 93 72.0
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 9.5e-31 137.1 91 72.5
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 1.2e-30 136.7 76 85.5
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 2.8e-30 135.6 73 84.9
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 2.8e-30 135.6 75 84.0
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 3.6e-30 135.2 93 69.9
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 4.7e-30 134.8 73 83.6
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 8.0e-30 134.0 74 82.4
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 1.0e-29 133.7 75 80.0
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 7.5e-28 127.5 75 85.3
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.7e-27 126.3 81 70.4
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 4.9e-27 124.8 99 63.6
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 2.0e-25 119.4 75 69.3
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 2.0e-25 119.4 83 60.2
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 1.0e-24 117.1 75 69.3
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 5.6e-23 111.3 75 64.0
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 7.3e-23 110.9 56 89.3
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 1.2e-22 110.2 56 89.3
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 2.1e-22 109.4 55 89.1
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 6.1e-22 107.8 54 87.0
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 4.0e-21 105.1 56 82.1
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 9.8e-20 100.5 54 83.3
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 4.1e-18 95.1 55 76.4
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 2.7e-17 92.4 73 54.8
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 1.1e-15 87.0 69 58.0
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 1.3e-11 73.6 36 91.7
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 1.1e-10 70.5 67 47.8


User provided reference genes

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