Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0324301 Rosa chinensis HOM05D007414 ORTHO05D009482 2.8e-236 821.6 436 100.0
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 8.5e-217 756.9 436 89.2
FAN06G2659 Fragaria x ananassa HOM05D007414 ORTHO05D009482 8.5e-217 756.9 436 89.2
FAN03G2686 Fragaria x ananassa HOM05D007414 ORTHO05D009482 2.7e-215 751.9 436 88.5
FAN10G2712 Fragaria x ananassa HOM05D007414 ORTHO05D009482 3.0e-214 748.4 436 88.1
MD02G1287000 Malus domestica HOM05D007414 ORTHO05D009482 1.9e-192 676.0 437 82.4
QL04p017831 Quercus lobata HOM05D007414 ORTHO05D009482 7.8e-170 600.9 450 70.9
CANSAT56G3550 Cannabis sativa HOM05D007414 ORTHO05D009482 1.1e-168 597.0 392 76.0
CiPaw.13G013700 Carya illinoinensis HOM05D007414 ORTHO05D009482 5.6e-168 594.7 442 71.5
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 1.9e-163 579.7 375 76.3
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 2.7e-162 575.9 425 70.8
Hma1.2p1_1202F.1_g266840 Hydrangea macrophylla HOM05D007414 ORTHO05D009482 6.6e-161 571.2 375 76.8
TAR623G0974 Trochodendron aralioides HOM05D007414 ORTHO05D009482 3.3e-160 568.9 387 74.4
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 7.6e-157 557.8 436 66.3
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 8.4e-156 554.3 435 66.9
CSS0022385 Camellia sinensis var. sinensis HOM05D007414 ORTHO05D009482 1.4e-155 553.5 371 74.9
Dinv22037 Davidia involucrata HOM05D007414 ORTHO05D009482 2.4e-155 552.7 366 76.5
Duzib114G0511 Durio zibethinus HOM05D007414 ORTHO05D009482 5.4e-155 551.6 375 72.3
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 5.4e-155 551.6 377 73.2
vmacro12698 Vaccinium macrocarpon HOM05D007414 ORTHO05D009482 5.4e-155 551.6 385 71.7
Glyma.04G137000 Glycine max HOM05D007414 ORTHO05D009482 1.6e-154 550.1 379 73.9
Eucgr.G03234 Eucalyptus grandis HOM05D007414 ORTHO05D009482 2.1e-154 549.7 390 71.0
Actinidia02265 Actinidia chinensis HOM05D007414 ORTHO05D009482 2.7e-154 549.3 375 72.8
Atru.chr12.1333 Acer truncatum HOM05D007414 ORTHO05D009482 4.6e-154 548.5 385 72.2
Nn7g36686 Nelumbo nucifera HOM05D007414 ORTHO05D009482 1.3e-153 547.0 383 70.8
VMungo1080G1369 Vigna mungo HOM05D007414 ORTHO05D009482 1.3e-153 547.0 393 71.0
Gorai.010G216100 Gossypium raimondii HOM05D007414 ORTHO05D009482 5.1e-153 545.0 438 66.4
Gohir.D10G192600 Gossypium hirsutum HOM05D007414 ORTHO05D009482 6.6e-153 544.7 390 70.8
Gorai.011G215300 Gossypium raimondii HOM05D007414 ORTHO05D009482 1.1e-152 543.9 390 70.8
Glyma.11G155300 Glycine max HOM05D007414 ORTHO05D009482 2.5e-152 542.7 379 72.8
arahy.Tifrunner.gnm1.ann1.GMDI7B Arachis hypogaea HOM05D007414 ORTHO05D009482 5.6e-152 541.6 409 68.2
Medtr3g014680 Medicago truncatula HOM05D007414 ORTHO05D009482 5.6e-152 541.6 391 70.6
Lalb_Chr25g0282101 Lupinus albus HOM05D007414 ORTHO05D009482 7.3e-152 541.2 380 71.8
Phvul.005G026400 Phaseolus vulgaris HOM05D007414 ORTHO05D009482 9.6e-152 540.8 393 70.2
Gohir.A10G185400 Gossypium hirsutum HOM05D007414 ORTHO05D009482 3.6e-151 538.9 409 68.2
Lj3g0021878 Lotus japonicus HOM05D007414 ORTHO05D009482 3.6e-151 538.9 382 71.7
TWI15G0498 Tripterygium wilfordii HOM05D007414 ORTHO05D009482 8.1e-151 537.7 407 68.8
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 5.3e-150 535.0 390 69.5
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 4.5e-149 531.9 383 70.5
CsaV3_5G024500 Cucumis sativus L. HOM05D007414 ORTHO05D009482 9.9e-149 530.8 408 68.1
Sabra01G0020000 Salix brachista HOM05D007414 ORTHO05D009482 2.9e-148 529.3 409 66.5
PGR031G2549 Punica granatum HOM05D007414 ORTHO05D009482 5.4e-147 525.0 440 63.4
MSTRG.20514 Avicennia marina HOM05D007414 ORTHO05D009482 1.0e-145 520.8 374 70.1
ClCG01G007530 Citrullus lanatus HOM05D007414 ORTHO05D009482 8.7e-145 517.7 394 68.0
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 3.3e-144 515.8 375 68.0
MELO3C005149.2 Cucumis melo HOM05D007414 ORTHO05D009482 3.3e-144 515.8 466 62.4
DCAR_031835 Daucus carota HOM05D007414 ORTHO05D009482 8.1e-143 511.1 428 62.6
Rhsim01G0124300 Rhododendron simsii HOM05D007414 ORTHO05D009482 1.0e-140 504.2 384 68.5
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 1.0e-140 504.2 376 67.0
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 1.3e-140 503.8 376 67.0
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 2.2e-140 503.1 376 67.0
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 6.4e-140 501.5 409 62.3
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 2.5e-139 499.6 375 67.5
CAN.G1045.37 Capsicum annuum HOM05D007414 ORTHO05D009482 3.3e-136 489.2 376 65.7
Lsat_1_v5_gn_4_29901 Lactuca sativa HOM05D007414 ORTHO05D009482 5.7e-136 488.4 375 66.7
PSO384G0147 Papaver somniferum HOM05D007414 ORTHO05D009482 1.6e-135 486.9 394 63.7
ECA234G1800 Erigeron canadensis HOM05D007414 ORTHO05D009482 6.2e-135 485.0 385 64.2
HanXRQChr16g0525321 Helianthus annuus HOM05D007414 ORTHO05D009482 6.2e-135 485.0 374 66.3
PSO339G0457 Papaver somniferum HOM05D007414 ORTHO05D009482 1.4e-134 483.8 394 63.2
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 5.3e-134 481.9 388 64.7
Gohir.A06G174800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 1.5e-133 480.3 389 66.3
Gohir.D06G184800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 1.0e-132 477.6 389 66.6
Sed0006433 Sechium edule HOM05D007414 ORTHO05D009482 2.2e-132 476.5 339 70.2
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 4.2e-131 472.2 432 59.7
Haze_03038 Corylus avellana HOM05D007414 ORTHO05D009482 3.3e-128 462.6 429 62.9
Potri.003G196200 Populus trichocarpa HOM05D007414 ORTHO05D009482 4.3e-128 462.2 375 62.7
Nn7g36678 Nelumbo nucifera HOM05D007414 ORTHO05D009482 1.5e-125 453.8 419 58.9
Manes.15G192920 Manihot esculenta HOM05D007414 ORTHO05D009482 2.0e-125 453.4 361 66.5
THA.LOC104826727 Tarenaya hassleriana HOM05D007414 ORTHO05D009482 2.6e-125 453.0 389 59.9
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 1.4e-123 447.2 352 65.1
Prupe.2G036300 Prunus persica HOM05D007414 ORTHO05D009482 5.5e-123 445.3 301 79.7
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 7.2e-123 444.9 422 58.1
Aqoxy1G00360 Aquilegia oxysepala HOM05D007414 ORTHO05D009482 1.0e-121 441.0 376 61.4
ATR0745G014 Amborella trichopoda HOM05D007414 ORTHO05D009482 1.4e-121 440.7 446 52.9
Peaxi162Scf00767g00524 Petunia axillaris HOM05D007414 ORTHO05D009482 1.7e-119 433.7 331 64.4
Hund13359 Selenicereus undatus HOM05D007414 ORTHO05D009482 2.5e-115 419.9 386 58.8
Psat5g222240 Pisum sativum HOM05D007414 ORTHO05D009482 5.0e-108 395.6 289 68.5
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 1.6e-106 390.6 309 64.1
SEGI_40936 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 1.4e-105 387.5 400 52.8
Dinv32026 Davidia involucrata HOM05D007414 ORTHO05D009482 7.0e-102 375.2 261 73.9
Migut.O00949 Erythranthe guttata HOM05D007414 ORTHO05D009482 3.4e-88 329.7 258 66.7
MBI19_g25612_MAGBIO Magnolia biondii HOM05D007414 ORTHO05D009482 1.9e-75 287.3 221 66.1
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 5.8e-72 275.8 415 40.2
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 3.6e-66 256.5 395 39.7
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 1.6e-61 241.1 413 36.8
Zm00001eb128490 Zea mays HOM05D007414 ORTHO05D009482 7.8e-61 238.8 205 60.5
DCAR_000332 Daucus carota HOM05D007414 ORTHO05D009482 3.7e-55 219.9 173 66.5
Os01g0272800 Oryza sativa ssp. japonica HOM05D007414 ORTHO05D009482 5.4e-54 216.1 214 55.1
TPR.G1409 Trifolium pratense HOM05D007414 ORTHO05D009482 3.5e-45 186.8 131 69.5
Migut.B01233 Erythranthe guttata HOM05D007414 ORTHO05D009482 1.1e-38 165.2 116 68.1
Nitab4.5_0008639g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 5.4e-38 162.9 119 68.1
Lsat_1_v5_gn_0_2021 Lactuca sativa HOM05D007414 ORTHO05D009482 4.8e-18 96.7 82 54.9
MD02G1286500 Malus domestica HOM05D007414 ORTHO05D009482 2.6e-16 90.9 81 60.5
PRCOL_00005884 Prasinoderma coloniale HOM05D007414 ORTHO05D009482 1.7e-15 88.2 291 26.8
MCO02G191 Micromonas commoda HOM05D007414 ORTHO05D009482 2.5e-14 84.3 294 26.5
Lsat_1_v5_gn_3_3821 Lactuca sativa HOM05D007414 ORTHO05D009482 7.4e-11 72.8 49 67.3
SEGI_36011 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 3.7e-10 70.5 120 42.5
TPR.G34603 Trifolium pratense HOM05D007414 ORTHO05D009482 4.1e-09 67.0 57 56.1
PRCOL_00006348 Prasinoderma coloniale HOM05D007414 ORTHO05D333730 9.0e-09 65.9 153 30.7
Sabra03G0146300 Salix brachista HOM05D007414 ORTHO05D009482 4.5e-08 63.5 42 66.7
Oeu014631.1 Olea europaea HOM05D007414 ORTHO05D009482 5.9e-08 63.2 57 59.6
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 1.7e-07 61.6 392 22.2
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 2.9e-07 60.8 371 22.1
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 1.1e-06 58.9 275 25.5
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 3.2e-06 57.4 278 24.8
Cre03.g145067 Chlamydomonas reinhardtii HOM05D007414 ORTHO05D009482 4.2e-06 57.0 66 47.0
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 5.5e-06 56.6 393 21.6
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 5.5e-06 56.6 371 22.9
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 5.5e-06 56.6 279 25.4
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 7.2e-06 56.2 283 25.1
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 7.2e-06 56.2 397 22.4
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 7.2e-06 56.2 396 22.2
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 9.4e-06 55.8 282 23.4
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 9.4e-06 55.8 280 25.4
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 9.4e-06 55.8 288 23.6


User provided reference genes

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